Wall clock time and date at job start Sat Apr 11 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86797 * 119.99500 * 2 1 4 4 H 1.48508 * 109.47144 * 269.99698 * 3 2 1 5 5 H 1.48502 * 109.47646 * 29.99812 * 3 2 1 6 6 H 1.48502 * 109.47363 * 149.99985 * 3 2 1 7 7 C 1.38794 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00455 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99924 * 180.02562 * 7 2 1 10 10 C 1.80989 * 100.00010 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47203 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47237 * 179.72043 * 14 13 11 16 16 C 1.53932 * 113.73391 * 271.72756 * 15 14 13 17 17 N 1.47959 * 86.17960 * 221.91972 * 16 15 14 18 18 C 1.46897 * 111.00037 * 137.58132 * 17 16 15 19 19 H 1.09000 * 109.52478 * 315.64079 * 18 17 16 20 20 C 1.53240 * 109.52276 * 75.76611 * 18 17 16 21 21 C 1.53279 * 108.54985 * 175.46944 * 20 18 17 22 22 C 1.50584 * 109.21008 * 304.46977 * 21 20 18 23 23 O 1.21230 * 119.36573 * 209.05451 * 22 21 20 24 24 N 1.34152 * 121.27921 * 29.07808 * 22 21 20 25 25 C 1.34137 * 122.58416 * 359.42746 * 24 22 21 26 26 O 1.21230 * 119.35768 * 180.54309 * 25 24 22 27 27 C 1.47959 * 90.76227 * 24.68941 * 17 16 15 28 28 H 0.96996 * 120.00680 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47307 * 60.00332 * 10 9 7 30 30 H 1.08998 * 109.47675 * 300.00200 * 10 9 7 31 31 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 32 32 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 33 33 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 34 34 H 1.09003 * 112.93571 * 43.43052 * 15 14 13 35 35 H 1.09002 * 113.75865 * 336.23812 * 16 15 14 36 36 H 1.09000 * 113.76119 * 107.60652 * 16 15 14 37 37 H 1.08997 * 109.62283 * 295.24915 * 20 18 17 38 38 H 1.09003 * 109.61959 * 55.79744 * 20 18 17 39 39 H 1.08999 * 109.53459 * 184.53232 * 21 20 18 40 40 H 1.08995 * 109.46576 * 64.36995 * 21 20 18 41 41 H 0.97001 * 118.70524 * 179.41313 * 24 22 21 42 42 H 1.09002 * 113.75769 * 220.98888 * 27 17 16 43 43 H 1.09003 * 113.76336 * 89.63265 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0867 -2.9843 0.0009 11 6 5.5732 -3.2323 0.0021 12 8 6.3441 -2.2960 0.0025 13 7 6.0459 -4.4944 0.0016 14 6 7.4910 -4.7354 0.0033 15 6 7.7567 -6.2421 0.0093 16 6 7.8218 -6.8541 1.4202 17 7 8.9765 -7.6333 0.9215 18 6 10.0548 -7.6731 1.9183 19 1 10.1971 -6.6785 2.3410 20 6 9.6843 -8.6556 3.0345 21 6 10.8693 -8.7657 4.0004 22 6 12.1013 -9.1611 3.2301 23 8 12.9707 -9.7980 3.7853 24 7 12.2558 -8.8219 1.9414 25 6 11.3311 -8.1280 1.2612 26 8 11.5269 -7.8614 0.0949 27 6 9.2468 -6.6089 -0.1113 28 1 -0.4851 0.8400 -0.0004 29 1 3.6442 -3.4312 -0.8894 30 1 3.6435 -3.4317 0.8906 31 1 5.4293 -5.2433 0.0046 32 1 7.9343 -4.2918 -0.8882 33 1 7.9335 -4.2848 0.8917 34 1 7.1130 -6.7898 -0.6790 35 1 8.0798 -6.1363 2.1989 36 1 6.9560 -7.4658 1.6740 37 1 8.8080 -8.2888 3.5690 38 1 9.4710 -9.6343 2.6046 39 1 10.6544 -9.5209 4.7563 40 1 11.0351 -7.8026 4.4832 41 1 13.0682 -9.0888 1.4835 42 1 9.5197 -7.0246 -1.0813 43 1 9.9217 -5.8193 0.2192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318100995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:01 Heat of formation + Delta-G solvation = -71.368912 kcal Electronic energy + Delta-G solvation = -26262.236023 eV Core-core repulsion = 22241.839748 eV Total energy + Delta-G solvation = -4020.396276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.26826 -40.57033 -39.35036 -38.90747 -36.18508 -34.95558 -33.96363 -32.45846 -31.10089 -29.57635 -27.38525 -26.79298 -25.63597 -24.51084 -24.16675 -22.84768 -20.78557 -20.08908 -19.69496 -18.30925 -17.94567 -17.80278 -17.06471 -16.63493 -16.44283 -16.14539 -15.63771 -15.34662 -15.32123 -15.12639 -14.97589 -14.86177 -14.20068 -13.76449 -13.69957 -13.48775 -13.34326 -13.17258 -13.02858 -12.81665 -12.64564 -12.14141 -11.91828 -11.66599 -11.47488 -11.28182 -11.06312 -11.02208 -10.91336 -10.81726 -10.64064 -10.57506 -9.88120 -9.62514 -9.43182 -9.05316 -8.99666 -8.52501 -6.94221 -6.30844 -4.02861 0.90172 2.06556 2.17376 2.72929 2.93454 3.11635 3.24495 3.31643 3.34666 3.48565 3.60132 3.75872 3.87535 4.03965 4.10819 4.28647 4.31284 4.33380 4.54052 4.68151 4.78597 4.83682 4.87924 4.95148 5.00040 5.08200 5.11553 5.25016 5.27227 5.33032 5.39737 5.46485 5.57638 5.70007 5.74305 5.84004 5.98594 6.15498 6.34279 6.47226 6.76122 7.21847 7.55908 7.92135 8.39572 8.44702 9.15313 10.78327 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031455 B = 0.001683 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.956570 B =16635.354514 C =16809.188739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.736 5.736 14 C 0.130 3.870 15 C -0.131 4.131 16 C 0.009 3.991 17 N -0.464 5.464 18 C 0.027 3.973 19 H 0.094 0.906 20 C -0.115 4.115 21 C -0.143 4.143 22 C 0.525 3.475 23 O -0.503 6.503 24 N -0.674 5.674 25 C 0.531 3.469 26 O -0.484 6.484 27 C 0.030 3.970 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.400 0.600 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.413 0.587 42 H 0.101 0.899 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.132 -21.006 6.621 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.390 5.390 14 C 0.006 3.994 15 C -0.151 4.151 16 C -0.120 4.120 17 N -0.188 5.188 18 C -0.085 4.085 19 H 0.112 0.888 20 C -0.153 4.153 21 C -0.183 4.183 22 C 0.313 3.687 23 O -0.376 6.376 24 N -0.340 5.340 25 C 0.318 3.682 26 O -0.355 6.355 27 C -0.099 4.099 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.234 0.766 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.253 0.747 42 H 0.119 0.881 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 22.562 -20.157 6.225 30.888 hybrid contribution -0.477 -0.027 0.077 0.484 sum 22.085 -20.184 6.302 30.575 Atomic orbital electron populations 1.69935 1.05907 1.27782 1.48025 1.24713 0.94453 0.98967 0.93177 0.86735 0.81868 0.83286 0.79948 1.19204 1.19945 1.15949 1.22315 0.88251 0.97539 1.58827 0.89369 1.84799 1.09309 1.00101 1.97430 1.23278 0.94005 1.04373 1.05826 1.20297 0.90604 0.82299 0.75210 1.90704 1.58816 1.42248 1.47725 1.45949 1.07295 1.08070 1.77721 1.21294 0.81907 0.93659 1.02573 1.23335 0.98380 0.95497 0.97851 1.24177 0.95087 0.95955 0.96750 1.68628 1.03203 1.39540 1.07385 1.22413 0.90635 1.00870 0.94558 0.88812 1.21740 0.98413 1.00740 0.94368 1.21969 0.91212 1.06052 0.99036 1.21049 0.89000 0.77501 0.81103 1.90813 1.43054 1.36261 1.67449 1.44864 1.22989 1.52554 1.13599 1.20703 0.84706 0.76110 0.86637 1.90798 1.77271 1.51582 1.15802 1.23873 0.94739 0.93045 0.98242 0.91931 0.88466 0.88459 0.76554 0.91061 0.91570 0.87181 0.90316 0.88346 0.88371 0.89234 0.86205 0.86856 0.74675 0.88112 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.23 13.97 55.49 0.78 -25.46 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.51 27.74 -169.99 -4.72 16.80 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 7 C -0.52 -14.78 10.04 30.94 0.31 -14.47 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 10 C -0.12 -2.28 6.16 36.01 0.22 -2.06 16 11 C 0.53 8.80 7.85 -10.98 -0.09 8.71 16 12 O -0.52 -10.77 15.86 5.56 0.09 -10.68 16 13 N -0.74 -8.12 5.56 -60.29 -0.33 -8.46 16 14 C 0.13 1.20 5.53 -4.04 -0.02 1.18 16 15 C -0.13 -0.83 3.94 -89.69 -0.35 -1.18 16 16 C 0.01 0.04 7.00 -2.77 -0.02 0.02 16 17 N -0.46 -2.80 5.94 -231.62 -1.38 -4.17 16 18 C 0.03 0.13 1.78 -68.80 -0.12 0.00 16 19 H 0.09 0.33 7.69 -51.93 -0.40 -0.07 16 20 C -0.11 -0.29 5.45 -26.46 -0.14 -0.44 16 21 C -0.14 -0.34 6.07 -27.80 -0.17 -0.51 16 22 C 0.52 3.02 7.75 -11.32 -0.09 2.93 16 23 O -0.50 -4.76 17.88 5.60 0.10 -4.66 16 24 N -0.67 -3.85 5.09 -11.75 -0.06 -3.91 16 25 C 0.53 3.57 7.54 -11.33 -0.09 3.49 16 26 O -0.48 -4.78 15.36 5.60 0.09 -4.70 16 27 C 0.03 0.21 5.51 -2.77 -0.02 0.19 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 30 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.40 3.26 8.47 -40.82 -0.35 2.91 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 34 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.35 7.45 -51.93 -0.39 -0.04 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.13 7.87 -51.93 -0.41 -0.28 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.41 2.21 8.79 -40.82 -0.36 1.86 16 42 H 0.10 0.82 7.87 -51.93 -0.41 0.41 16 43 H 0.08 0.53 7.82 -51.93 -0.41 0.12 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -37.21 372.27 -8.57 -45.77 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.08 Total: -1.16 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.67 Total: 0.54 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: -0.99 Total: -41.99 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.27 Total: -20.03 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.72 Total: 16.80 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.21 -8.57 -45.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318100995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.596 kcal (2) G-P(sol) polarization free energy of solvation -37.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds