Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86797 * 119.99500 * 2 1 4 4 H 1.48508 * 109.47144 * 269.99698 * 3 2 1 5 5 H 1.48502 * 109.47646 * 29.99812 * 3 2 1 6 6 H 1.48502 * 109.47363 * 149.99985 * 3 2 1 7 7 C 1.38794 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00455 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99924 * 180.02562 * 7 2 1 10 10 C 1.80989 * 100.00010 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47203 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47237 * 179.72043 * 14 13 11 16 16 C 1.53932 * 113.73391 * 271.72756 * 15 14 13 17 17 N 1.47959 * 86.17960 * 221.91972 * 16 15 14 18 18 C 1.46897 * 111.00037 * 137.58132 * 17 16 15 19 19 H 1.09000 * 109.52478 * 315.64079 * 18 17 16 20 20 C 1.53240 * 109.52276 * 75.76611 * 18 17 16 21 21 C 1.53279 * 108.54985 * 175.46944 * 20 18 17 22 22 C 1.50584 * 109.21008 * 304.46977 * 21 20 18 23 23 O 1.21230 * 119.36573 * 209.05451 * 22 21 20 24 24 N 1.34152 * 121.27921 * 29.07808 * 22 21 20 25 25 C 1.34137 * 122.58416 * 359.42746 * 24 22 21 26 26 O 1.21230 * 119.35768 * 180.54309 * 25 24 22 27 27 C 1.47959 * 90.76227 * 24.68941 * 17 16 15 28 28 H 0.96996 * 120.00680 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47307 * 60.00332 * 10 9 7 30 30 H 1.08998 * 109.47675 * 300.00200 * 10 9 7 31 31 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 32 32 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 33 33 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 34 34 H 1.09003 * 112.93571 * 43.43052 * 15 14 13 35 35 H 1.09002 * 113.75865 * 336.23812 * 16 15 14 36 36 H 1.09000 * 113.76119 * 107.60652 * 16 15 14 37 37 H 1.08997 * 109.62283 * 295.24915 * 20 18 17 38 38 H 1.09003 * 109.61959 * 55.79744 * 20 18 17 39 39 H 1.08999 * 109.53459 * 184.53232 * 21 20 18 40 40 H 1.08995 * 109.46576 * 64.36995 * 21 20 18 41 41 H 0.97001 * 118.70524 * 179.41313 * 24 22 21 42 42 H 1.09002 * 113.75769 * 220.98888 * 27 17 16 43 43 H 1.09003 * 113.76336 * 89.63265 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0867 -2.9843 0.0009 11 6 5.5732 -3.2323 0.0021 12 8 6.3441 -2.2960 0.0025 13 7 6.0459 -4.4944 0.0016 14 6 7.4910 -4.7354 0.0033 15 6 7.7567 -6.2421 0.0093 16 6 7.8218 -6.8541 1.4202 17 7 8.9765 -7.6333 0.9215 18 6 10.0548 -7.6731 1.9183 19 1 10.1971 -6.6785 2.3410 20 6 9.6843 -8.6556 3.0345 21 6 10.8693 -8.7657 4.0004 22 6 12.1013 -9.1611 3.2301 23 8 12.9707 -9.7980 3.7853 24 7 12.2558 -8.8219 1.9414 25 6 11.3311 -8.1280 1.2612 26 8 11.5269 -7.8614 0.0949 27 6 9.2468 -6.6089 -0.1113 28 1 -0.4851 0.8400 -0.0004 29 1 3.6442 -3.4312 -0.8894 30 1 3.6435 -3.4317 0.8906 31 1 5.4293 -5.2433 0.0046 32 1 7.9343 -4.2918 -0.8882 33 1 7.9335 -4.2848 0.8917 34 1 7.1130 -6.7898 -0.6790 35 1 8.0798 -6.1363 2.1989 36 1 6.9560 -7.4658 1.6740 37 1 8.8080 -8.2888 3.5690 38 1 9.4710 -9.6343 2.6046 39 1 10.6544 -9.5209 4.7563 40 1 11.0351 -7.8026 4.4832 41 1 13.0682 -9.0888 1.4835 42 1 9.5197 -7.0246 -1.0813 43 1 9.9217 -5.8193 0.2192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318100995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -103.454561 kcal Electronic energy + Delta-G solvation = -26263.627362 eV Core-core repulsion = 22241.839748 eV Total energy + Delta-G solvation = -4021.787614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.73835 -41.15811 -40.38365 -39.64641 -36.70169 -35.84924 -34.65300 -34.53165 -31.94408 -30.55459 -28.18127 -27.76221 -27.22698 -25.08743 -24.57381 -23.35059 -21.86965 -20.72443 -20.23316 -19.71632 -18.80866 -18.33820 -17.84463 -17.52470 -17.41831 -17.07000 -16.83045 -16.51179 -16.10830 -15.86772 -15.73305 -15.55398 -15.52216 -14.93164 -14.70889 -14.50208 -14.30762 -13.94309 -13.67190 -13.49098 -13.43303 -13.32273 -13.03571 -12.96268 -12.65797 -12.40017 -12.11582 -11.94023 -11.83243 -11.56669 -11.40347 -11.35881 -11.15327 -11.15141 -10.92701 -10.50244 -10.10773 -9.88191 -8.96748 -8.49515 -6.19892 0.40511 1.02255 1.33060 1.48739 1.58443 1.61538 1.62501 1.73009 2.24891 2.29072 2.71608 2.74583 2.88863 2.92957 3.39247 3.48460 3.62574 3.75133 3.86227 3.96772 4.04265 4.25063 4.29099 4.33677 4.35482 4.44760 4.52455 4.61198 4.71305 4.77293 4.84473 4.88037 4.90593 5.01933 5.08952 5.23317 5.25084 5.48619 5.70018 5.72816 5.92090 6.13812 6.29878 6.52949 6.73353 6.95980 7.25180 8.62693 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031455 B = 0.001683 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.956570 B =16635.354514 C =16809.188739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.179 6.179 10 C -0.111 4.111 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.708 5.708 14 C 0.132 3.868 15 C -0.120 4.120 16 C 0.017 3.983 17 N -0.473 5.473 18 C 0.026 3.974 19 H 0.113 0.887 20 C -0.105 4.105 21 C -0.134 4.134 22 C 0.526 3.474 23 O -0.545 6.545 24 N -0.673 5.673 25 C 0.532 3.468 26 O -0.522 6.522 27 C 0.029 3.971 28 H 0.276 0.724 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.419 0.581 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.411 0.589 42 H 0.083 0.917 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.394 -21.819 7.990 31.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.185 1.185 6 H -0.160 1.160 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.047 5.953 10 C -0.262 4.262 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.362 5.362 14 C 0.008 3.992 15 C -0.140 4.140 16 C -0.111 4.111 17 N -0.197 5.197 18 C -0.085 4.085 19 H 0.130 0.870 20 C -0.143 4.143 21 C -0.174 4.174 22 C 0.318 3.682 23 O -0.420 6.420 24 N -0.338 5.338 25 C 0.321 3.679 26 O -0.395 6.395 27 C -0.101 4.101 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.256 0.744 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.250 0.750 42 H 0.101 0.899 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 22.806 -21.032 7.604 31.942 hybrid contribution -0.486 0.032 -0.384 0.620 sum 22.320 -21.000 7.220 31.485 Atomic orbital electron populations 1.70014 1.07282 1.28968 1.49229 1.25556 0.95257 1.02226 0.92974 0.85875 0.80722 0.79690 0.80124 1.18884 1.18452 1.15979 1.22471 0.90297 0.96677 1.58086 0.91839 1.84735 1.06368 1.06603 1.97589 1.23278 0.96055 0.99316 1.07565 1.19945 0.89297 0.83492 0.75287 1.90696 1.59368 1.44003 1.50410 1.45701 1.08672 1.06663 1.75127 1.21402 0.80111 0.95728 1.01968 1.23241 0.98006 0.93240 0.99489 1.24236 0.95085 0.95987 0.95786 1.68614 1.03985 1.39359 1.07724 1.22565 0.89008 1.02371 0.94595 0.86970 1.21732 0.99163 0.99820 0.93569 1.22059 0.89033 1.07592 0.98678 1.21766 0.89533 0.76222 0.80716 1.90800 1.44845 1.38281 1.68110 1.44940 1.22852 1.52094 1.13882 1.21201 0.85274 0.75233 0.86176 1.90787 1.78089 1.53140 1.17503 1.23779 0.94972 0.93290 0.98016 0.91426 0.86937 0.86526 0.74411 0.92465 0.91548 0.86507 0.89126 0.86734 0.85903 0.89925 0.84809 0.84500 0.75012 0.89893 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.04 13.97 21.65 0.30 -54.74 16 2 C 0.05 2.61 5.50 84.86 0.47 3.08 16 3 Si 0.91 44.32 27.74 68.60 1.90 46.23 16 4 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.24 -11.38 6.74 99.48 0.67 -10.71 16 7 C -0.53 -30.04 10.04 67.95 0.68 -29.36 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 9 S -0.18 -8.79 18.55 -56.49 -1.05 -9.84 16 10 C -0.11 -3.89 6.16 71.24 0.44 -3.45 16 11 C 0.53 16.69 7.85 87.66 0.69 17.38 16 12 O -0.57 -22.84 15.86 -3.03 -0.05 -22.89 16 13 N -0.71 -13.62 5.56 -463.05 -2.57 -16.19 16 14 C 0.13 2.14 5.53 86.38 0.48 2.62 16 15 C -0.12 -1.20 3.94 -10.15 -0.04 -1.24 16 16 C 0.02 0.10 7.00 86.40 0.60 0.71 16 17 N -0.47 -4.51 5.94 -886.70 -5.26 -9.78 16 18 C 0.03 0.18 1.78 44.21 0.08 0.26 16 19 H 0.11 0.40 7.69 -2.39 -0.02 0.38 16 20 C -0.11 -0.17 5.45 30.77 0.17 -0.01 16 21 C -0.13 -0.22 6.07 29.90 0.18 -0.04 16 22 C 0.53 5.46 7.75 87.72 0.68 6.14 16 23 O -0.54 -10.13 17.88 -2.88 -0.05 -10.18 16 24 N -0.67 -7.40 5.09 -428.62 -2.18 -9.59 16 25 C 0.53 6.71 7.54 87.72 0.66 7.37 16 26 O -0.52 -10.40 15.36 -2.88 -0.04 -10.45 16 27 C 0.03 0.36 5.51 86.40 0.48 0.84 16 28 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 30 H 0.12 3.65 8.14 -2.40 -0.02 3.63 16 31 H 0.42 5.24 8.47 -92.70 -0.79 4.45 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.14 7.84 -2.39 -0.02 1.12 16 34 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 0.38 7.45 -2.39 -0.02 0.36 16 36 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.12 -0.30 7.87 -2.39 -0.02 -0.32 16 38 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.13 -0.05 8.14 -2.39 -0.02 -0.06 16 40 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.41 4.62 8.79 -92.71 -0.81 3.81 16 42 H 0.08 1.35 7.87 -2.39 -0.02 1.33 16 43 H 0.07 0.94 7.82 -2.39 -0.02 0.92 16 Total: -1.00 -82.77 372.27 -4.02 -86.79 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -0.58 Total: 6.37 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.56 Total: 4.28 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -9.72 Total: -90.30 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -0.14 Total: -43.52 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.05 Total: -9.84 kcal Total: -82.77 -4.02 -86.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318100995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.669 kcal (2) G-P(sol) polarization free energy of solvation -82.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds