Wall clock time and date at job start Sat Apr 11 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99849 * 2 1 4 4 H 1.48502 * 109.47241 * 239.99947 * 3 2 1 5 5 H 1.48497 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46895 * 120.00224 * 3 2 1 7 7 C 1.38804 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99887 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99690 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99573 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46798 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00173 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00050 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00315 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47479 * 180.02562 * 14 13 11 16 16 C 1.53512 * 114.17268 * 184.99762 * 15 14 13 17 17 N 1.47476 * 87.93057 * 220.13199 * 16 15 14 18 18 C 1.46903 * 110.99583 * 138.69996 * 17 16 15 19 19 H 1.08997 * 109.52555 * 300.12889 * 18 17 16 20 20 C 1.53245 * 109.52111 * 180.02562 * 18 17 16 21 21 C 1.53246 * 108.56606 * 184.41982 * 20 18 17 22 22 C 1.50587 * 109.21217 * 55.58427 * 21 20 18 23 23 O 1.21224 * 119.36039 * 150.93863 * 22 21 20 24 24 N 1.34210 * 121.23433 * 331.00959 * 22 21 20 25 25 C 1.34147 * 122.60387 * 0.42333 * 24 22 21 26 26 O 1.21219 * 119.35675 * 179.54503 * 25 24 22 27 27 C 1.47478 * 87.83529 * 27.01176 * 17 16 15 28 28 H 0.97000 * 119.99961 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47403 * 60.00532 * 10 9 7 30 30 H 1.08998 * 109.47438 * 299.99684 * 10 9 7 31 31 H 0.97001 * 120.00055 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.47340 * 59.99396 * 14 13 11 33 33 H 1.09002 * 109.47017 * 300.00006 * 14 13 11 34 34 H 1.09005 * 113.25271 * 317.94494 * 15 14 13 35 35 H 1.09003 * 113.47514 * 105.37089 * 16 15 14 36 36 H 1.08995 * 113.52732 * 334.91249 * 16 15 14 37 37 H 1.08997 * 109.62258 * 64.69874 * 20 18 17 38 38 H 1.08996 * 109.77335 * 304.22985 * 20 18 17 39 39 H 1.09002 * 109.52281 * 175.52178 * 21 20 18 40 40 H 1.08995 * 109.52337 * 295.64848 * 21 20 18 41 41 H 0.96995 * 118.69249 * 180.48160 * 24 22 21 42 42 H 1.08996 * 113.48117 * 87.75358 * 27 17 16 43 43 H 1.09003 * 113.47641 * 218.22151 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0003 14 6 2.3305 -7.7150 -0.0003 15 6 3.5025 -8.6985 -0.0001 16 6 3.0872 -10.1714 -0.1221 17 7 4.1313 -10.4923 0.8688 18 6 3.6519 -11.4905 1.8341 19 1 2.7790 -11.1008 2.3578 20 6 4.7608 -11.7980 2.8461 21 6 4.2784 -12.9191 3.7729 22 6 3.8716 -14.1077 2.9427 23 8 3.9688 -15.2214 3.4115 24 7 3.4050 -13.9571 1.6933 25 6 3.2803 -12.7564 1.1082 26 8 2.8597 -12.6893 -0.0267 27 6 3.9704 -9.1253 1.3982 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7314 0.8895 30 1 3.1245 -3.7313 -0.8905 31 1 3.8010 -6.1835 -0.0014 32 1 1.7215 -7.8751 -0.8900 33 1 1.7222 -7.8752 0.8899 34 1 4.3102 -8.4056 -0.6710 35 1 3.2785 -10.5963 -1.1075 36 1 2.0759 -10.3691 0.2331 37 1 4.9781 -10.9058 3.4334 38 1 5.6605 -12.1188 2.3212 39 1 5.0844 -13.2053 4.4485 40 1 3.4238 -12.5701 4.3525 41 1 3.1471 -14.7477 1.1941 42 1 3.1948 -9.0429 2.1595 43 1 4.9102 -8.6636 1.7013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318100996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:05 Heat of formation + Delta-G solvation = -68.511122 kcal Electronic energy + Delta-G solvation = -26191.489527 eV Core-core repulsion = 22171.217174 eV Total energy + Delta-G solvation = -4020.272353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.31102 -40.65518 -39.29750 -38.84850 -36.19191 -34.90389 -33.93775 -32.43920 -31.07805 -29.48123 -27.36293 -26.55777 -25.50320 -24.47365 -24.17707 -22.85951 -20.73059 -20.05570 -19.64972 -18.30016 -17.89723 -17.79167 -17.07363 -16.57647 -16.33465 -16.06674 -15.61893 -15.31404 -15.25620 -15.10746 -14.83316 -14.80938 -14.15992 -13.80866 -13.66680 -13.47719 -13.28937 -13.07763 -12.93198 -12.61608 -12.57637 -12.11353 -11.80971 -11.63253 -11.45672 -11.05790 -11.05065 -10.98635 -10.89863 -10.81082 -10.77986 -10.45635 -9.84058 -9.60495 -9.38553 -9.07539 -8.91271 -8.25433 -6.51442 -6.22653 -3.93472 0.90165 2.07273 2.17478 2.99598 3.07526 3.16352 3.22540 3.26212 3.28907 3.36878 3.64512 3.78054 3.89559 4.06823 4.15236 4.19499 4.33034 4.35094 4.56223 4.78952 4.86203 4.89980 4.97014 5.01876 5.12403 5.16826 5.17984 5.28134 5.35499 5.39745 5.50848 5.58292 5.63317 5.76357 5.87468 5.90999 6.12371 6.16426 6.37324 6.58286 6.76274 7.22011 7.58101 7.67919 8.33844 8.58876 9.22516 10.84678 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.033755 B = 0.001614 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.308400 B =17348.750948 C =17636.935905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.133 3.867 15 C -0.131 4.131 16 C 0.026 3.974 17 N -0.457 5.457 18 C 0.026 3.974 19 H 0.097 0.903 20 C -0.113 4.113 21 C -0.143 4.143 22 C 0.525 3.475 23 O -0.503 6.503 24 N -0.674 5.674 25 C 0.530 3.470 26 O -0.484 6.484 27 C 0.004 3.996 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.414 0.586 42 H 0.078 0.922 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.200 -26.238 6.421 29.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.008 3.992 15 C -0.151 4.151 16 C -0.103 4.103 17 N -0.180 5.180 18 C -0.086 4.086 19 H 0.114 0.886 20 C -0.150 4.150 21 C -0.183 4.183 22 C 0.314 3.686 23 O -0.375 6.375 24 N -0.340 5.340 25 C 0.317 3.683 26 O -0.355 6.355 27 C -0.124 4.124 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.253 0.747 42 H 0.096 0.904 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.557 -27.119 5.994 29.712 hybrid contribution 1.490 1.092 0.118 1.851 sum 12.047 -26.027 6.112 29.324 Atomic orbital electron populations 1.70008 1.05953 1.27575 1.46745 1.24993 0.95026 0.99021 0.94520 0.86225 0.79237 0.81245 0.78795 1.19931 1.20813 1.19953 1.22828 0.94878 0.91668 1.59103 0.90960 1.85402 1.04952 0.96333 1.96729 1.23530 1.06561 0.95390 1.04930 1.20322 0.86520 0.86322 0.75120 1.90706 1.15419 1.85631 1.47501 1.45984 1.09966 1.05320 1.77990 1.21210 0.94909 0.80487 1.02579 1.23084 0.99092 0.95056 0.97834 1.23732 0.94691 0.92877 0.98997 1.69073 1.38196 1.02239 1.08456 1.22458 0.99528 0.91975 0.94663 0.88597 1.21700 0.98128 0.99355 0.95867 1.21972 1.05119 0.92690 0.98534 1.21066 0.74762 0.91807 0.81001 1.90811 1.50065 1.26785 1.69876 1.44876 1.60779 1.11409 1.16927 1.20730 0.75986 0.84946 0.86609 1.90806 1.40688 1.86520 1.17439 1.24079 1.02369 0.89025 0.96964 0.92122 0.89229 0.89195 0.76729 0.91037 0.91587 0.87029 0.88465 0.90581 0.88387 0.89258 0.86216 0.86844 0.74665 0.90387 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 11 C 0.53 9.43 7.85 -10.99 -0.09 9.34 16 12 O -0.52 -11.44 15.86 5.56 0.09 -11.35 16 13 N -0.74 -8.81 5.56 -60.29 -0.33 -9.14 16 14 C 0.13 1.34 5.59 -4.04 -0.02 1.31 16 15 C -0.13 -0.91 4.08 -90.09 -0.37 -1.27 16 16 C 0.03 0.19 5.14 -7.56 -0.04 0.16 16 17 N -0.46 -2.90 6.13 -237.93 -1.46 -4.36 16 18 C 0.03 0.13 1.84 -68.79 -0.13 0.00 16 19 H 0.10 0.35 7.52 -51.93 -0.39 -0.04 16 20 C -0.11 -0.30 5.56 -26.48 -0.15 -0.45 16 21 C -0.14 -0.35 6.07 -27.81 -0.17 -0.52 16 22 C 0.52 3.07 7.75 -11.29 -0.09 2.98 16 23 O -0.50 -4.79 17.88 5.61 0.10 -4.69 16 24 N -0.67 -3.93 5.10 -11.74 -0.06 -3.99 16 25 C 0.53 3.65 7.53 -11.32 -0.09 3.56 16 26 O -0.48 -4.86 14.88 5.61 0.08 -4.77 16 27 C 0.00 0.02 7.14 -7.56 -0.05 -0.03 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 30 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 31 H 0.40 3.55 8.47 -40.82 -0.35 3.21 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.70 7.82 -51.93 -0.41 0.30 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.86 7.75 -51.93 -0.40 0.45 16 36 H 0.08 0.59 7.66 -51.93 -0.40 0.19 16 37 H 0.10 0.14 8.13 -51.93 -0.42 -0.28 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.11 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.41 2.27 8.79 -40.82 -0.36 1.91 16 42 H 0.08 0.39 7.29 -51.93 -0.38 0.01 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -37.51 374.46 -9.23 -46.74 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.03 Total: -0.69 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.77 Total: -0.48 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -1.12 Total: -42.68 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.27 Total: -20.81 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.51 -9.23 -46.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318100996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.767 kcal (2) G-P(sol) polarization free energy of solvation -37.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds