Wall clock time and date at job start Sat Apr 11 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99849 * 2 1 4 4 H 1.48502 * 109.47241 * 239.99947 * 3 2 1 5 5 H 1.48497 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46895 * 120.00224 * 3 2 1 7 7 C 1.38804 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99887 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99690 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99573 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46798 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00173 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00050 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00315 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47479 * 180.02562 * 14 13 11 16 16 C 1.53512 * 114.17268 * 184.99762 * 15 14 13 17 17 N 1.47476 * 87.93057 * 220.13199 * 16 15 14 18 18 C 1.46903 * 110.99583 * 138.69996 * 17 16 15 19 19 H 1.08997 * 109.52555 * 300.12889 * 18 17 16 20 20 C 1.53245 * 109.52111 * 180.02562 * 18 17 16 21 21 C 1.53246 * 108.56606 * 184.41982 * 20 18 17 22 22 C 1.50587 * 109.21217 * 55.58427 * 21 20 18 23 23 O 1.21224 * 119.36039 * 150.93863 * 22 21 20 24 24 N 1.34210 * 121.23433 * 331.00959 * 22 21 20 25 25 C 1.34147 * 122.60387 * 0.42333 * 24 22 21 26 26 O 1.21219 * 119.35675 * 179.54503 * 25 24 22 27 27 C 1.47478 * 87.83529 * 27.01176 * 17 16 15 28 28 H 0.97000 * 119.99961 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47403 * 60.00532 * 10 9 7 30 30 H 1.08998 * 109.47438 * 299.99684 * 10 9 7 31 31 H 0.97001 * 120.00055 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.47340 * 59.99396 * 14 13 11 33 33 H 1.09002 * 109.47017 * 300.00006 * 14 13 11 34 34 H 1.09005 * 113.25271 * 317.94494 * 15 14 13 35 35 H 1.09003 * 113.47514 * 105.37089 * 16 15 14 36 36 H 1.08995 * 113.52732 * 334.91249 * 16 15 14 37 37 H 1.08997 * 109.62258 * 64.69874 * 20 18 17 38 38 H 1.08996 * 109.77335 * 304.22985 * 20 18 17 39 39 H 1.09002 * 109.52281 * 175.52178 * 21 20 18 40 40 H 1.08995 * 109.52337 * 295.64848 * 21 20 18 41 41 H 0.96995 * 118.69249 * 180.48160 * 24 22 21 42 42 H 1.08996 * 113.48117 * 87.75358 * 27 17 16 43 43 H 1.09003 * 113.47641 * 218.22151 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0003 14 6 2.3305 -7.7150 -0.0003 15 6 3.5025 -8.6985 -0.0001 16 6 3.0872 -10.1714 -0.1221 17 7 4.1313 -10.4923 0.8688 18 6 3.6519 -11.4905 1.8341 19 1 2.7790 -11.1008 2.3578 20 6 4.7608 -11.7980 2.8461 21 6 4.2784 -12.9191 3.7729 22 6 3.8716 -14.1077 2.9427 23 8 3.9688 -15.2214 3.4115 24 7 3.4050 -13.9571 1.6933 25 6 3.2803 -12.7564 1.1082 26 8 2.8597 -12.6893 -0.0267 27 6 3.9704 -9.1253 1.3982 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7314 0.8895 30 1 3.1245 -3.7313 -0.8905 31 1 3.8010 -6.1835 -0.0014 32 1 1.7215 -7.8751 -0.8900 33 1 1.7222 -7.8752 0.8899 34 1 4.3102 -8.4056 -0.6710 35 1 3.2785 -10.5963 -1.1075 36 1 2.0759 -10.3691 0.2331 37 1 4.9781 -10.9058 3.4334 38 1 5.6605 -12.1188 2.3212 39 1 5.0844 -13.2053 4.4485 40 1 3.4238 -12.5701 4.3525 41 1 3.1471 -14.7477 1.1941 42 1 3.1948 -9.0429 2.1595 43 1 4.9102 -8.6636 1.7013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318100996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:04 Heat of formation + Delta-G solvation = -100.968271 kcal Electronic energy + Delta-G solvation = -26192.896974 eV Core-core repulsion = 22171.217174 eV Total energy + Delta-G solvation = -4021.679800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.80345 -41.25067 -40.38172 -39.67443 -36.72184 -35.85526 -34.57771 -34.53877 -31.94374 -30.54682 -28.20769 -27.57354 -27.03879 -25.10537 -24.60263 -23.39232 -21.85152 -20.76838 -20.22344 -19.67667 -18.81603 -18.33515 -17.81058 -17.50930 -17.40697 -16.85374 -16.79918 -16.50571 -16.15877 -15.90377 -15.75543 -15.57344 -15.54292 -14.70663 -14.60459 -14.43095 -14.21035 -13.95359 -13.70769 -13.45177 -13.34891 -13.14192 -13.03663 -12.84022 -12.62147 -12.44416 -12.15791 -11.92565 -11.71216 -11.56016 -11.41098 -11.36008 -11.10440 -11.07174 -10.85981 -10.24338 -10.10897 -9.97396 -8.63741 -8.32073 -6.09930 0.39053 1.29962 1.45892 1.49638 1.59121 1.61594 1.66498 1.71580 2.28366 2.33367 2.75113 2.91966 3.02050 3.31765 3.39443 3.49062 3.62381 3.79400 3.86947 4.02324 4.05618 4.25776 4.32643 4.33959 4.36650 4.42775 4.56451 4.60670 4.70992 4.77557 4.84617 4.87399 4.88183 5.02183 5.09166 5.20259 5.23201 5.44281 5.50959 5.68973 5.91005 6.22137 6.28584 6.57191 6.72165 7.09270 7.30565 8.76753 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.033755 B = 0.001614 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.308400 B =17348.750948 C =17636.935905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.569 6.569 13 N -0.708 5.708 14 C 0.134 3.866 15 C -0.121 4.121 16 C 0.025 3.975 17 N -0.463 5.463 18 C 0.024 3.976 19 H 0.115 0.885 20 C -0.103 4.103 21 C -0.134 4.134 22 C 0.526 3.474 23 O -0.544 6.544 24 N -0.673 5.673 25 C 0.531 3.469 26 O -0.522 6.522 27 C 0.012 3.988 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.418 0.582 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.411 0.589 42 H 0.088 0.912 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.141 -25.755 7.856 30.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.448 6.448 13 N -0.362 5.362 14 C 0.010 3.990 15 C -0.140 4.140 16 C -0.104 4.104 17 N -0.186 5.186 18 C -0.087 4.087 19 H 0.133 0.867 20 C -0.140 4.140 21 C -0.174 4.174 22 C 0.318 3.682 23 O -0.419 6.419 24 N -0.337 5.337 25 C 0.320 3.680 26 O -0.395 6.395 27 C -0.116 4.116 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.256 0.744 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.250 0.750 42 H 0.106 0.894 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.570 -26.667 7.439 30.832 hybrid contribution 0.605 0.759 -0.359 1.035 sum 14.175 -25.908 7.080 30.370 Atomic orbital electron populations 1.70181 1.07984 1.28614 1.48032 1.26125 0.95942 1.03317 0.93785 0.85015 0.77797 0.75741 0.79513 1.18716 1.20566 1.18551 1.23184 0.95389 0.92006 1.58828 0.89786 1.85597 1.10806 0.99327 1.97061 1.23376 1.03419 0.94344 1.06915 1.20066 0.86217 0.86751 0.75122 1.90698 1.17603 1.86156 1.50332 1.45698 1.10342 1.04850 1.75345 1.21307 0.96199 0.79707 1.01788 1.22979 0.97887 0.93488 0.99644 1.23633 0.94903 0.93136 0.98711 1.69064 1.37648 1.03118 1.08750 1.22625 1.01183 0.90385 0.94550 0.86746 1.21691 0.96764 1.00295 0.95297 1.22064 1.06498 0.90771 0.98056 1.21791 0.73419 0.92352 0.80666 1.90798 1.51922 1.28676 1.70552 1.44950 1.60309 1.11293 1.17195 1.21216 0.74910 0.85703 0.86172 1.90797 1.42537 1.87019 1.19192 1.24105 1.03491 0.88097 0.95870 0.92057 0.86911 0.87262 0.74425 0.92661 0.91774 0.86130 0.90308 0.91124 0.85894 0.89914 0.84731 0.84483 0.74999 0.89382 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.48 13.22 21.65 0.29 -55.20 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.55 -30.59 9.50 67.96 0.65 -29.95 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 9 S -0.16 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 11 C 0.53 18.35 7.85 87.66 0.69 19.04 16 12 O -0.57 -25.46 15.86 -3.03 -0.05 -25.51 16 13 N -0.71 -15.25 5.56 -463.06 -2.57 -17.83 16 14 C 0.13 2.49 5.59 86.38 0.48 2.97 16 15 C -0.12 -1.39 4.08 -10.45 -0.04 -1.43 16 16 C 0.03 0.36 5.14 83.57 0.43 0.79 16 17 N -0.46 -4.76 6.13 -906.69 -5.56 -10.31 16 18 C 0.02 0.18 1.84 44.22 0.08 0.26 16 19 H 0.12 0.46 7.52 -2.39 -0.02 0.45 16 20 C -0.10 -0.20 5.56 30.76 0.17 -0.03 16 21 C -0.13 -0.25 6.07 29.89 0.18 -0.07 16 22 C 0.53 5.58 7.75 87.71 0.68 6.26 16 23 O -0.54 -10.21 17.88 -2.86 -0.05 -10.26 16 24 N -0.67 -7.64 5.10 -428.55 -2.18 -9.82 16 25 C 0.53 6.95 7.53 87.72 0.66 7.61 16 26 O -0.52 -10.69 14.88 -2.84 -0.04 -10.73 16 27 C 0.01 0.09 7.14 83.57 0.60 0.69 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 30 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 31 H 0.42 5.92 8.47 -92.71 -0.79 5.13 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.27 7.82 -2.39 -0.02 1.25 16 34 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.08 1.40 7.75 -2.39 -0.02 1.38 16 36 H 0.07 1.05 7.66 -2.39 -0.02 1.04 16 37 H 0.12 -0.26 8.13 -2.39 -0.02 -0.28 16 38 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.14 -0.30 8.14 -2.39 -0.02 -0.32 16 41 H 0.41 4.77 8.79 -92.71 -0.81 3.96 16 42 H 0.09 0.51 7.29 -2.39 -0.02 0.49 16 43 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -85.58 374.46 -4.36 -89.94 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -0.54 Total: 11.55 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.48 Total: 2.93 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -10.03 Total: -93.16 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -0.14 Total: -46.50 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -85.58 -4.36 -89.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318100996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.029 kcal (2) G-P(sol) polarization free energy of solvation -85.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds