Wall clock time and date at job start Sat Apr 11 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86808 * 119.99735 * 2 1 4 4 H 1.48494 * 109.47181 * 240.00071 * 3 2 1 5 5 H 1.48501 * 109.46656 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47036 * 119.99779 * 3 2 1 7 7 C 1.38793 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00353 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00069 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47523 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99539 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00354 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99912 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.90371 * 31.14058 * 14 13 11 16 16 C 1.55422 * 111.10625 * 267.17442 * 14 13 11 17 17 C 1.54321 * 103.04810 * 206.29847 * 16 14 13 18 18 N 1.47448 * 107.23159 * 22.28093 * 17 16 14 19 19 C 1.46900 * 111.00041 * 123.26094 * 18 17 16 20 20 H 1.09001 * 109.51979 * 294.16040 * 19 18 17 21 21 C 1.53235 * 109.52279 * 54.28193 * 19 18 17 22 22 C 1.53243 * 108.56724 * 175.52402 * 21 19 18 23 23 C 1.50590 * 109.15832 * 304.38266 * 22 21 19 24 24 O 1.21225 * 119.35881 * 209.07110 * 23 22 21 25 25 N 1.34136 * 121.27876 * 29.09846 * 23 22 21 26 26 C 1.34209 * 122.60663 * 359.52091 * 25 23 22 27 27 O 1.21227 * 119.40891 * 180.49190 * 26 25 23 28 28 C 1.47846 * 108.56553 * 0.99350 * 18 17 16 29 29 H 0.96996 * 120.00717 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47135 * 59.99854 * 10 9 7 31 31 H 1.09008 * 109.47140 * 300.00422 * 10 9 7 32 32 H 0.96994 * 119.99874 * 359.97438 * 13 11 10 33 33 H 1.09004 * 110.69757 * 87.90721 * 16 14 13 34 34 H 1.09005 * 110.84788 * 324.75602 * 16 14 13 35 35 H 1.08999 * 109.88748 * 262.87827 * 17 16 14 36 36 H 1.08997 * 110.02694 * 141.76299 * 17 16 14 37 37 H 1.09002 * 109.62595 * 295.24344 * 21 19 18 38 38 H 1.09007 * 109.62290 * 55.61355 * 21 19 18 39 39 H 1.08995 * 109.52663 * 64.29322 * 22 21 19 40 40 H 1.09007 * 109.52186 * 184.48336 * 22 21 19 41 41 H 0.97006 * 118.70678 * 179.44505 * 25 23 22 42 42 H 1.09002 * 110.37464 * 94.73346 * 28 18 17 43 43 H 1.08999 * 110.37318 * 216.96123 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6966 1.2126 7 6 2.0103 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9877 -5.3027 -0.0012 12 8 0.7914 -5.5023 -0.0011 13 7 2.8446 -6.3430 -0.0018 14 6 2.3309 -7.7150 -0.0019 15 1 1.3781 -7.7735 -0.5280 16 6 2.2023 -8.2645 1.4463 17 6 2.3329 -9.7900 1.2530 18 7 3.0353 -10.0098 -0.0247 19 6 4.2476 -10.8155 0.1728 20 1 4.9642 -10.2543 0.7725 21 6 3.8850 -12.1179 0.8941 22 6 5.1419 -12.9895 0.9887 23 6 5.7024 -13.2001 -0.3931 24 8 6.3177 -14.2158 -0.6365 25 7 5.5345 -12.2852 -1.3596 26 6 4.8577 -11.1429 -1.1644 27 8 4.7336 -10.3603 -2.0819 28 6 3.3636 -8.6941 -0.6138 29 1 -0.4851 0.8399 -0.0004 30 1 3.1246 -3.7312 0.8894 31 1 3.1247 -3.7311 -0.8905 32 1 3.8013 -6.1833 -0.0022 33 1 1.2301 -8.0116 1.8694 34 1 3.0061 -7.8859 2.0777 35 1 1.3432 -10.2451 1.2151 36 1 2.9085 -10.2220 2.0716 37 1 3.5201 -11.8921 1.8961 38 1 3.1126 -12.6442 0.3332 39 1 5.8849 -12.4911 1.6112 40 1 4.8845 -13.9534 1.4281 41 1 5.9185 -12.4554 -2.2340 42 1 4.3762 -8.3977 -0.3399 43 1 3.2590 -8.7271 -1.6983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318312120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:14 Heat of formation + Delta-G solvation = -126.674155 kcal Electronic energy + Delta-G solvation = -26766.522697 eV Core-core repulsion = 22743.728205 eV Total energy + Delta-G solvation = -4022.794491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.61349 -40.99808 -40.14489 -39.20259 -36.70533 -35.65090 -34.58266 -34.14274 -31.88312 -30.75633 -29.31700 -27.79140 -27.46744 -24.93175 -24.02102 -22.44425 -22.21507 -21.54256 -20.09517 -19.85053 -18.78795 -18.33922 -17.86478 -17.74071 -17.29358 -16.87494 -16.63041 -16.36764 -16.28246 -15.75377 -15.62835 -15.51577 -15.14772 -14.73956 -14.62304 -14.45560 -14.36639 -13.96702 -13.64711 -13.41401 -13.17506 -13.16420 -12.87956 -12.82503 -12.62781 -12.47080 -12.35848 -12.06462 -11.77143 -11.69517 -11.35026 -11.28861 -11.18537 -11.12678 -10.97480 -10.27776 -10.10691 -9.42804 -8.66352 -8.34137 -6.12338 0.46238 1.26238 1.44063 1.46300 1.55684 1.59650 1.64417 1.79286 2.17941 2.28086 2.78988 2.99804 3.03863 3.32857 3.42308 3.53947 3.65982 3.80565 3.97075 4.01512 4.05762 4.13044 4.25975 4.30478 4.34646 4.42147 4.50887 4.61149 4.74510 4.87373 4.92924 4.97131 5.05979 5.11969 5.14717 5.23106 5.41834 5.45538 5.71387 5.78740 5.94654 6.19865 6.36750 6.48317 6.79149 7.06961 7.23590 8.74732 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.001837 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.419429 B =15237.163016 C =15668.448693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.563 6.563 13 N -0.704 5.704 14 C 0.129 3.871 15 H 0.074 0.926 16 C -0.151 4.151 17 C 0.050 3.950 18 N -0.522 5.522 19 C 0.059 3.941 20 H 0.116 0.884 21 C -0.114 4.114 22 C -0.131 4.131 23 C 0.525 3.475 24 O -0.546 6.546 25 N -0.674 5.674 26 C 0.531 3.469 27 O -0.523 6.523 28 C 0.059 3.941 29 H 0.271 0.729 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.415 0.585 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.083 0.917 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.410 0.590 42 H 0.067 0.933 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.624 -28.095 6.561 32.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.281 4.281 11 C 0.323 3.677 12 O -0.441 6.441 13 N -0.358 5.358 14 C 0.023 3.977 15 H 0.092 0.908 16 C -0.190 4.190 17 C -0.077 4.077 18 N -0.248 5.248 19 C -0.053 4.053 20 H 0.133 0.867 21 C -0.151 4.151 22 C -0.170 4.170 23 C 0.317 3.683 24 O -0.422 6.422 25 N -0.338 5.338 26 C 0.320 3.680 27 O -0.395 6.395 28 C -0.069 4.069 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.253 0.747 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.102 0.898 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.249 0.751 42 H 0.086 0.914 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.326 -28.705 5.822 31.778 hybrid contribution 2.500 1.851 -0.558 3.160 sum 14.826 -26.854 5.264 31.123 Atomic orbital electron populations 1.70171 1.07954 1.28674 1.47918 1.26128 0.95972 1.03322 0.93754 0.85010 0.77808 0.75724 0.79490 1.18772 1.20426 1.18550 1.23175 0.95356 0.92026 1.58966 0.89892 1.85579 1.10508 0.99190 1.97055 1.23373 1.03583 0.94318 1.06816 1.20051 0.86236 0.86604 0.74797 1.90695 1.17382 1.86011 1.49974 1.45602 1.10148 1.04549 1.75472 1.22165 0.98017 0.80186 0.97332 0.90757 1.23212 1.03326 0.96607 0.95905 1.22953 1.00697 0.93989 0.90019 1.63419 1.21029 1.14967 1.25347 1.22114 0.93473 0.98426 0.91271 0.86727 1.21950 0.97594 0.91650 1.03946 1.22044 0.99082 1.05472 0.90428 1.21810 0.77188 0.80829 0.88473 1.90799 1.40480 1.28057 1.82880 1.44959 1.51560 1.20027 1.17233 1.21271 0.75768 0.79461 0.91495 1.90795 1.56169 1.47566 1.45010 1.23082 0.96909 0.86777 1.00119 0.91994 0.86971 0.87411 0.74730 0.91543 0.89512 0.89247 0.87838 0.85213 0.89795 0.84112 0.84673 0.75104 0.91448 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.89 13.22 21.65 0.29 -55.61 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.55 -31.12 9.50 67.95 0.65 -30.48 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 10 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 11 C 0.54 19.41 7.85 87.66 0.69 20.10 16 12 O -0.56 -25.79 15.50 -3.04 -0.05 -25.84 16 13 N -0.70 -17.12 5.20 -435.53 -2.27 -19.39 16 14 C 0.13 2.82 3.43 46.48 0.16 2.97 16 15 H 0.07 2.15 7.54 -2.39 -0.02 2.13 16 16 C -0.15 -2.40 6.65 31.88 0.21 -2.19 16 17 C 0.05 0.46 6.19 86.65 0.54 1.00 16 18 N -0.52 -6.51 4.99 -864.49 -4.31 -10.82 16 19 C 0.06 0.41 1.89 44.21 0.08 0.49 16 20 H 0.12 0.28 7.97 -2.39 -0.02 0.26 16 21 C -0.11 -0.09 5.02 30.75 0.15 0.06 16 22 C -0.13 -0.05 6.07 29.89 0.18 0.13 16 23 C 0.53 5.21 7.74 87.72 0.68 5.89 16 24 O -0.55 -10.00 17.87 -2.86 -0.05 -10.05 16 25 N -0.67 -7.52 5.10 -428.56 -2.18 -9.71 16 26 C 0.53 7.02 7.55 87.71 0.66 7.68 16 27 O -0.52 -11.23 14.95 -2.87 -0.04 -11.28 16 28 C 0.06 1.02 4.81 86.77 0.42 1.44 16 29 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.11 3.85 8.14 -2.40 -0.02 3.84 16 31 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 32 H 0.42 7.22 8.57 -92.71 -0.79 6.43 16 33 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.09 1.14 8.14 -2.38 -0.02 1.13 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.19 5.95 -2.39 -0.01 0.18 16 37 H 0.13 -0.56 6.36 -2.39 -0.02 -0.57 16 38 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 39 H 0.14 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.14 -0.23 8.14 -2.38 -0.02 -0.25 16 41 H 0.41 4.85 8.79 -92.70 -0.81 4.03 16 42 H 0.07 0.94 7.56 -2.39 -0.02 0.92 16 43 H 0.08 1.76 7.05 -2.39 -0.02 1.74 16 Total: -1.00 -86.95 367.69 -2.97 -89.92 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -0.54 Total: 13.15 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.32 Total: 3.69 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -8.48 Total: -95.52 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -0.14 Total: -47.16 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -86.95 -2.97 -89.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318312120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.756 kcal (2) G-P(sol) polarization free energy of solvation -86.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds