Wall clock time and date at job start Sat Apr 11 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.53719 * 2 1 4 4 C 1.53032 * 109.46007 * 179.36989 * 3 2 1 5 5 C 1.53197 * 109.31075 * 178.61637 * 4 3 2 6 6 N 1.46930 * 108.77668 * 54.63447 * 5 4 3 7 7 C 1.34771 * 120.62974 * 126.41076 * 6 5 4 8 8 O 1.21279 * 119.99891 * 179.97438 * 7 6 5 9 9 C 1.50703 * 120.00331 * 359.97438 * 7 6 5 10 10 S 1.80994 * 109.47464 * 179.97438 * 9 7 6 11 11 C 1.76194 * 100.00469 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99423 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00485 * 179.97438 * 11 10 9 14 14 N 1.31627 * 119.99719 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00258 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46854 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47056 * 120.00245 * 15 13 11 18 18 H 1.48495 * 109.47232 * 240.00344 * 15 13 11 19 19 C 1.46927 * 118.73677 * 306.39359 * 6 5 4 20 20 C 1.53042 * 109.45627 * 59.29837 * 3 2 1 21 21 N 1.47309 * 110.60267 * 122.83330 * 2 1 3 22 22 C 1.34861 * 106.44087 * 118.72310 * 21 2 1 23 23 O 1.21544 * 123.72820 * 179.97438 * 22 21 2 24 24 N 1.33787 * 112.49937 * 359.87131 * 22 21 2 25 25 C 1.34767 * 111.64639 * 0.08368 * 24 22 21 26 26 O 1.21237 * 127.15808 * 180.02562 * 25 24 22 27 27 H 1.09005 * 109.47330 * 59.99444 * 1 2 3 28 28 H 1.08996 * 109.47215 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47190 * 300.00122 * 1 2 3 30 30 H 1.09000 * 109.45923 * 299.32913 * 3 2 1 31 31 H 1.09002 * 109.49818 * 298.56292 * 4 3 2 32 32 H 1.08994 * 109.50136 * 58.66386 * 4 3 2 33 33 H 1.08996 * 109.58455 * 294.84405 * 5 4 3 34 34 H 1.09010 * 109.58494 * 174.42078 * 5 4 3 35 35 H 1.09002 * 109.46996 * 299.99892 * 9 7 6 36 36 H 1.09002 * 109.47029 * 59.99624 * 9 7 6 37 37 H 0.97000 * 120.00215 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.58457 * 293.82057 * 19 6 5 39 39 H 1.09000 * 109.58278 * 173.39423 * 19 6 5 40 40 H 1.08996 * 109.49952 * 301.33712 * 20 3 2 41 41 H 1.09008 * 109.49643 * 61.43586 * 20 3 2 42 42 H 0.97001 * 126.68625 * 298.65567 * 21 2 1 43 43 H 0.97004 * 124.17665 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 3.5967 1.4041 0.0159 5 6 4.1308 2.8395 -0.0191 6 7 3.5298 3.5948 1.0888 7 6 4.3062 4.2588 1.9678 8 8 3.7980 4.8790 2.8778 9 6 5.8057 4.2307 1.8202 10 16 6.5607 5.2092 3.1424 11 6 8.2636 5.0093 2.7370 12 1 8.5488 4.4154 1.8812 13 6 9.2387 5.6149 3.5174 14 7 8.8911 6.3382 4.5608 15 14 11.0442 5.4023 3.0880 16 1 11.1682 4.5490 1.8789 17 1 11.6489 6.7317 2.8193 18 1 11.7506 4.7576 4.2239 19 6 2.0665 3.6127 1.2197 20 6 1.5556 2.1687 1.2408 21 7 2.0483 -0.7476 1.1586 22 6 2.7645 -1.7758 0.6600 23 8 3.3357 -2.5976 1.3497 24 7 2.7743 -1.7918 -0.6777 25 6 2.0632 -0.7692 -1.1923 26 8 1.8865 -0.5171 -2.3650 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.7227 1.9495 -0.8960 31 1 3.9419 0.9095 0.9238 32 1 3.9595 0.8596 -0.8559 33 1 3.8629 3.3060 -0.9671 34 1 5.2151 2.8288 0.0918 35 1 6.1577 3.2010 1.8834 36 1 6.0835 4.6510 0.8536 37 1 9.5724 6.7618 5.1060 38 1 1.6304 4.1423 0.3728 39 1 1.7889 4.1121 2.1480 40 1 0.4657 2.1684 1.2407 41 1 1.9200 1.6668 2.1372 42 1 1.9031 -0.5394 2.0948 43 1 3.2368 -2.4568 -1.2114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322311820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:48 Heat of formation + Delta-G solvation = -112.277113 kcal Electronic energy + Delta-G solvation = -27978.544500 eV Core-core repulsion = 23956.374311 eV Total energy + Delta-G solvation = -4022.170189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.70141 -41.11816 -39.79290 -38.84781 -37.28144 -35.70452 -34.59980 -33.53314 -32.48670 -31.50066 -30.13310 -27.69901 -26.89054 -25.38267 -24.23430 -23.65258 -22.45245 -21.37417 -20.40119 -19.59453 -19.13766 -18.27632 -17.67293 -17.60954 -17.02993 -16.89954 -16.81502 -16.72887 -16.52492 -15.88002 -15.61088 -15.53418 -15.21013 -14.97554 -14.70057 -14.48927 -14.19030 -13.91256 -13.64952 -13.44516 -13.37149 -13.16850 -12.95359 -12.91951 -12.60218 -12.38686 -12.26828 -12.13812 -11.76742 -11.70805 -11.66297 -11.50598 -11.17175 -11.14172 -10.85569 -10.48148 -10.27347 -9.69078 -8.68163 -8.36210 -6.14161 0.50847 1.25165 1.40098 1.40716 1.45140 1.56282 1.57599 1.93151 2.10797 2.12055 2.26040 2.87448 2.98069 3.21417 3.28004 3.51551 3.62344 3.88461 3.95209 4.06187 4.21085 4.25094 4.27527 4.31269 4.42061 4.47410 4.59687 4.73640 4.76832 4.77963 4.81042 4.90231 4.96109 5.02645 5.04053 5.25060 5.32146 5.40511 5.60110 5.76927 5.86684 6.18396 6.26671 6.36056 7.05362 7.09017 7.14991 8.73232 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.002691 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.259469 B =10401.485935 C =11249.383648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.131 3.869 3 C -0.074 4.074 4 C -0.133 4.133 5 C 0.106 3.894 6 N -0.605 5.605 7 C 0.534 3.466 8 O -0.564 6.564 9 C -0.126 4.126 10 S -0.149 6.149 11 C -0.546 4.546 12 H 0.081 0.919 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.998 3.002 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.274 1.274 19 C 0.107 3.893 20 C -0.119 4.119 21 N -0.704 5.704 22 C 0.705 3.295 23 O -0.586 6.586 24 N -0.674 5.674 25 C 0.538 3.462 26 O -0.484 6.484 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.271 0.729 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.063 0.937 42 H 0.448 0.552 43 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.018 -15.373 -15.238 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.041 3.959 3 C -0.094 4.094 4 C -0.172 4.172 5 C -0.017 4.017 6 N -0.339 5.339 7 C 0.321 3.679 8 O -0.442 6.442 9 C -0.277 4.277 10 S 0.078 5.922 11 C -0.694 4.694 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.181 1.181 17 H -0.198 1.198 18 H -0.199 1.199 19 C -0.015 4.015 20 C -0.157 4.157 21 N -0.369 5.369 22 C 0.404 3.596 23 O -0.463 6.463 24 N -0.345 5.345 25 C 0.325 3.675 26 O -0.354 6.354 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.137 0.863 41 H 0.082 0.918 42 H 0.294 0.706 43 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -20.589 -14.591 -14.020 28.868 hybrid contribution 2.197 -0.952 -0.667 2.486 sum -18.391 -15.543 -14.687 28.205 Atomic orbital electron populations 1.22117 0.87691 1.04447 1.06308 1.21617 0.98682 0.92844 0.82781 1.21405 0.94575 0.91580 1.01803 1.22011 0.95916 0.96512 1.02718 1.21889 0.98932 0.91158 0.89686 1.48092 1.07325 1.50199 1.28324 1.20024 0.88316 0.78274 0.81241 1.90675 1.75422 1.44023 1.34102 1.23384 0.95012 1.04912 1.04409 1.85532 1.03741 1.65989 1.36951 1.23214 0.91473 1.37667 1.17016 0.90117 1.26106 1.04944 0.93847 0.94154 1.70181 1.35868 1.31712 1.16903 0.84922 0.76012 0.78452 0.78674 1.18125 1.19810 1.19948 1.21777 0.77954 0.98130 1.03630 1.21998 1.03099 0.93679 0.96910 1.45765 1.53566 1.27652 1.09903 1.16024 0.79401 0.82279 0.81847 1.91061 1.50127 1.43257 1.61825 1.44298 1.50986 1.30970 1.08247 1.20919 0.76508 0.80211 0.89903 1.90849 1.57543 1.69430 1.17551 0.88551 0.91297 0.87774 0.86422 0.92028 0.90429 0.88601 0.89867 0.88039 0.87665 0.91963 0.89001 0.90750 0.86326 0.91802 0.70581 0.71839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 8.60 71.98 0.62 0.13 16 2 C 0.13 1.06 0.75 2.98 0.00 1.06 16 3 C -0.07 -0.65 1.67 -10.77 -0.02 -0.66 16 4 C -0.13 -1.82 4.83 30.67 0.15 -1.67 16 5 C 0.11 1.83 6.34 86.36 0.55 2.37 16 6 N -0.61 -14.36 2.97 -818.89 -2.43 -16.79 16 7 C 0.53 19.33 7.72 87.66 0.68 20.00 16 8 O -0.56 -25.40 15.27 -3.03 -0.05 -25.45 16 9 C -0.13 -5.02 4.50 71.24 0.32 -4.69 16 10 S -0.15 -8.30 20.57 -56.49 -1.16 -9.47 16 11 C -0.55 -31.27 9.50 67.95 0.65 -30.63 16 12 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 13 C 0.01 0.82 5.49 84.86 0.47 1.28 16 14 N -0.91 -55.93 13.22 21.65 0.29 -55.64 16 15 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 C 0.11 1.83 6.43 86.36 0.56 2.38 16 20 C -0.12 -1.11 4.91 30.67 0.15 -0.96 16 21 N -0.70 -7.46 4.80 -439.35 -2.11 -9.57 16 22 C 0.71 11.69 8.91 179.34 1.60 13.29 16 23 O -0.59 -15.11 18.04 -3.85 -0.07 -15.18 16 24 N -0.67 -8.40 5.70 -440.87 -2.51 -10.92 16 25 C 0.54 6.56 6.17 87.94 0.54 7.11 16 26 O -0.48 -8.17 18.02 -2.90 -0.05 -8.22 16 27 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 28 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.10 0.00 6.49 -2.39 -0.02 -0.02 16 30 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 1.06 7.62 -2.39 -0.02 1.04 16 32 H 0.08 0.99 7.17 -2.39 -0.02 0.98 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.63 5.93 -2.38 -0.01 1.61 16 35 H 0.10 3.74 7.69 -2.39 -0.02 3.72 16 36 H 0.11 3.81 7.94 -2.39 -0.02 3.79 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.69 7.01 -2.39 -0.02 1.68 16 40 H 0.12 0.36 6.43 -2.39 -0.02 0.34 16 41 H 0.06 0.75 7.36 -2.38 -0.02 0.73 16 42 H 0.45 3.86 8.36 -92.71 -0.77 3.09 16 43 H 0.44 4.23 8.96 -92.71 -0.83 3.40 16 Total: -1.00 -84.92 363.11 -0.35 -85.27 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -0.53 Total: 11.17 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.25 Total: 9.01 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -6.77 Total: -92.92 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -0.17 Total: -48.86 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.47 kcal Total: -84.92 -0.35 -85.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322311820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.007 kcal (2) G-P(sol) polarization free energy of solvation -84.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds