Wall clock time and date at job start Sat Apr 11 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99736 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99896 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99696 * 3 2 1 7 7 C 1.38798 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99832 * 359.72198 * 7 2 1 10 10 C 1.81004 * 99.99907 * 180.27629 * 9 7 2 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00732 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.47160 * 120.98137 * 359.72590 * 13 11 10 15 15 C 1.53711 * 108.16397 * 129.42756 * 14 13 11 16 16 O 1.42968 * 109.14632 * 52.53681 * 15 14 13 17 17 C 1.42958 * 114.16659 * 297.28955 * 16 15 14 18 18 H 1.09002 * 109.55478 * 302.63140 * 17 16 15 19 19 C 1.53000 * 109.51442 * 182.50839 * 17 16 15 20 20 N 1.46893 * 109.47299 * 65.24967 * 19 17 16 21 21 C 1.46905 * 111.00198 * 180.02562 * 20 19 17 22 22 C 1.50692 * 109.47085 * 180.02562 * 21 20 19 23 23 C 1.41383 * 126.80534 * 95.00290 * 22 21 20 24 24 C 1.35448 * 103.98801 * 179.97438 * 23 22 21 25 25 O 1.34034 * 106.44704 * 359.97438 * 24 23 22 26 26 N 1.20924 * 111.56757 * 359.70811 * 25 24 23 27 27 C 1.47155 * 120.98584 * 179.97438 * 13 11 10 28 28 H 0.96995 * 120.00136 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47255 * 300.00302 * 10 9 7 30 30 H 1.09001 * 109.46783 * 60.00610 * 10 9 7 31 31 H 1.09003 * 109.67822 * 249.20834 * 14 13 11 32 32 H 1.09001 * 109.67901 * 9.75722 * 14 13 11 33 33 H 1.08994 * 109.65713 * 292.57415 * 15 14 13 34 34 H 1.08993 * 109.44329 * 172.36741 * 15 14 13 35 35 H 1.08999 * 109.47448 * 185.25259 * 19 17 16 36 36 H 1.09004 * 109.46672 * 305.25281 * 19 17 16 37 37 H 1.00902 * 111.00469 * 303.95644 * 20 19 17 38 38 H 1.09002 * 109.46762 * 299.99880 * 21 20 19 39 39 H 1.08998 * 109.46940 * 59.99931 * 21 20 19 40 40 H 1.08008 * 127.99998 * 359.95856 * 23 22 21 41 41 H 1.08001 * 126.77317 * 179.97438 * 24 23 22 42 42 H 1.08999 * 109.67472 * 350.24217 * 27 13 11 43 43 H 1.09005 * 109.67999 * 110.75293 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0086 10 6 2.5161 -3.8913 0.0147 11 6 1.9876 -5.3026 0.0216 12 8 0.7914 -5.5023 0.0218 13 7 2.8444 -6.3430 0.0264 14 6 4.2998 -6.1257 0.0191 15 6 4.9150 -6.9636 1.1515 16 8 4.4751 -8.3180 1.0249 17 6 3.0623 -8.4894 1.1594 18 1 2.7374 -8.0983 2.1235 19 6 2.7171 -9.9773 1.0690 20 7 3.2997 -10.6857 2.2164 21 6 2.9886 -12.1204 2.1626 22 6 3.6008 -12.8121 3.3532 23 6 2.9656 -13.1047 4.5819 24 6 3.9271 -13.7230 5.3085 25 8 5.0188 -13.7686 4.5324 26 7 4.8173 -13.2650 3.4516 27 6 2.3521 -7.7298 0.0337 28 1 -0.4850 0.8400 -0.0004 29 1 3.1247 -3.7359 -0.8761 30 1 3.1246 -3.7266 0.9039 31 1 4.7129 -6.4394 -0.9396 32 1 4.5142 -5.0698 0.1840 33 1 4.5976 -6.5663 2.1155 34 1 6.0021 -6.9258 1.0813 35 1 1.6341 -10.1002 1.0779 36 1 3.1220 -10.3886 0.1443 37 1 4.2960 -10.5338 2.2673 38 1 1.9075 -12.2585 2.1789 39 1 3.3956 -12.5463 1.2456 40 1 1.9489 -12.8857 4.8737 41 1 3.8326 -14.1039 6.3147 42 1 1.2762 -7.7364 0.2082 43 1 2.5716 -8.2022 -0.9238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326951407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:02 Heat of formation + Delta-G solvation = -5.932928 kcal Electronic energy + Delta-G solvation = -26261.203244 eV Core-core repulsion = 22243.644485 eV Total energy + Delta-G solvation = -4017.558759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.30000 -40.28803 -38.37505 -36.91009 -34.71762 -34.24561 -32.45863 -32.30608 -31.79688 -29.57458 -28.59405 -26.74644 -25.51555 -24.42266 -23.49849 -23.24831 -21.58257 -21.21377 -19.30728 -18.26163 -17.91064 -17.77731 -16.98087 -16.85225 -16.28793 -15.97304 -15.51887 -15.47342 -15.09102 -14.83215 -14.74680 -14.58260 -13.99831 -13.87569 -13.58539 -13.51641 -13.21481 -12.75899 -12.67574 -12.45164 -12.28459 -12.00662 -11.80636 -11.68870 -11.46796 -11.08811 -11.05161 -10.88411 -10.78132 -10.58900 -10.26503 -10.03930 -9.84255 -9.44946 -9.09508 -8.90000 -8.53267 -8.27182 -6.54112 -6.24552 -3.95748 1.12699 1.80723 2.76434 2.89289 2.95780 3.20317 3.22075 3.27898 3.43255 3.50982 3.63564 3.95158 4.14502 4.17062 4.57791 4.61806 4.73753 4.76374 4.85433 4.86655 4.92169 4.94439 5.02604 5.10663 5.14797 5.18091 5.25059 5.32141 5.36166 5.45056 5.50169 5.59961 5.61955 5.70313 5.78793 5.83100 6.04942 6.39231 6.49838 6.88950 6.91788 7.42561 7.56552 7.87614 8.32030 8.45268 9.20699 10.82845 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026240 B = 0.001742 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.820367 B =16067.312593 C =16182.746134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.537 3.463 12 O -0.514 6.514 13 N -0.624 5.624 14 C 0.073 3.927 15 C 0.051 3.949 16 O -0.381 6.381 17 C 0.080 3.920 18 H 0.075 0.925 19 C 0.071 3.929 20 N -0.681 5.681 21 C 0.137 3.863 22 C 0.019 3.981 23 C -0.218 4.218 24 C -0.063 4.063 25 O 0.100 5.900 26 N -0.362 5.362 27 C 0.087 3.913 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.354 0.646 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.173 0.827 41 H 0.217 0.783 42 H 0.103 0.897 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.847 -26.667 7.042 29.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.301 4.301 11 C 0.325 3.675 12 O -0.388 6.388 13 N -0.361 5.361 14 C -0.050 4.050 15 C -0.026 4.026 16 O -0.300 6.300 17 C 0.021 3.979 18 H 0.093 0.907 19 C -0.058 4.058 20 N -0.314 5.314 21 C 0.007 3.993 22 C -0.140 4.140 23 C -0.239 4.239 24 C -0.144 4.144 25 O 0.032 5.968 26 N -0.066 5.066 27 C -0.036 4.036 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.173 0.827 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.190 0.810 41 H 0.233 0.767 42 H 0.121 0.879 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.534 -26.865 6.585 28.947 hybrid contribution 1.636 1.378 -0.194 2.148 sum 10.171 -25.487 6.391 28.176 Atomic orbital electron populations 1.70015 1.05954 1.27504 1.46745 1.24995 0.95036 0.99042 0.94485 0.86162 0.79405 0.81531 0.78370 1.20249 1.20721 1.19686 1.22854 0.94887 0.91584 1.59103 0.90916 1.85417 1.04820 0.96346 1.96703 1.23554 1.06638 0.95202 1.04748 1.20372 0.86147 0.86121 0.74833 1.90693 1.15091 1.85131 1.47836 1.48129 1.06364 1.05579 1.76024 1.22514 0.80487 1.02133 0.99891 1.23041 0.99806 0.82104 0.97682 1.87875 1.22075 1.26534 1.93470 1.22510 0.81756 0.95003 0.98667 0.90674 1.21917 1.00568 0.91362 0.91980 1.60440 1.19848 1.07828 1.43323 1.20182 1.00327 0.87168 0.91590 1.23512 0.90677 1.01545 0.98242 1.22755 1.02785 1.04622 0.93771 1.26047 0.85978 1.02693 0.99696 1.84839 1.35361 1.58324 1.18259 1.73864 1.18825 1.12794 1.01078 1.22112 1.01115 0.81747 0.98673 0.92145 0.89176 0.89222 0.90613 0.88238 0.92283 0.87649 0.88862 0.93723 0.82727 0.88514 0.93179 0.80981 0.76675 0.87877 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.03 4.53 36.01 0.16 -2.87 16 11 C 0.54 10.15 7.73 -10.99 -0.08 10.07 16 12 O -0.51 -11.61 15.33 5.56 0.09 -11.52 16 13 N -0.62 -8.91 3.01 -172.04 -0.52 -9.42 16 14 C 0.07 0.80 6.57 -3.31 -0.02 0.78 16 15 C 0.05 0.49 7.00 37.53 0.26 0.76 16 16 O -0.38 -4.10 9.91 -35.23 -0.35 -4.45 16 17 C 0.08 0.83 3.01 -26.60 -0.08 0.75 16 18 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 19 C 0.07 0.60 5.39 -3.83 -0.02 0.58 16 20 N -0.68 -6.05 6.49 -115.06 -0.75 -6.80 16 21 C 0.14 1.04 6.27 -4.98 -0.03 1.01 16 22 C 0.02 0.17 6.84 -82.10 -0.56 -0.39 16 23 C -0.22 -1.41 11.12 -39.38 -0.44 -1.85 16 24 C -0.06 -0.33 12.30 29.74 0.37 0.03 16 25 O 0.10 0.84 11.20 17.19 0.19 1.03 16 26 N -0.36 -3.68 12.07 33.42 0.40 -3.28 16 27 C 0.09 1.06 5.92 -3.55 -0.02 1.04 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.09 1.67 8.00 -51.92 -0.42 1.26 16 30 H 0.09 1.65 7.67 -51.92 -0.40 1.25 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.06 6.05 -51.93 -0.31 0.74 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.35 3.54 8.29 -39.29 -0.33 3.22 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.22 0.18 8.06 -52.49 -0.42 -0.24 16 42 H 0.10 1.37 7.08 -51.93 -0.37 1.00 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -35.85 376.97 -8.04 -43.89 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.02 Total: 0.65 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.27 Total: -2.93 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.13 Total: -44.74 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.07 Total: -14.94 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.85 -8.04 -43.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326951407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.960 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds