Wall clock time and date at job start Sat Apr 11 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99736 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99896 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99696 * 3 2 1 7 7 C 1.38798 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99832 * 359.72198 * 7 2 1 10 10 C 1.81004 * 99.99907 * 180.27629 * 9 7 2 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00732 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.47160 * 120.98137 * 359.72590 * 13 11 10 15 15 C 1.53711 * 108.16397 * 129.42756 * 14 13 11 16 16 O 1.42968 * 109.14632 * 52.53681 * 15 14 13 17 17 C 1.42958 * 114.16659 * 297.28955 * 16 15 14 18 18 H 1.09002 * 109.55478 * 302.63140 * 17 16 15 19 19 C 1.53000 * 109.51442 * 182.50839 * 17 16 15 20 20 N 1.46893 * 109.47299 * 65.24967 * 19 17 16 21 21 C 1.46905 * 111.00198 * 180.02562 * 20 19 17 22 22 C 1.50692 * 109.47085 * 180.02562 * 21 20 19 23 23 C 1.41383 * 126.80534 * 95.00290 * 22 21 20 24 24 C 1.35448 * 103.98801 * 179.97438 * 23 22 21 25 25 O 1.34034 * 106.44704 * 359.97438 * 24 23 22 26 26 N 1.20924 * 111.56757 * 359.70811 * 25 24 23 27 27 C 1.47155 * 120.98584 * 179.97438 * 13 11 10 28 28 H 0.96995 * 120.00136 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47255 * 300.00302 * 10 9 7 30 30 H 1.09001 * 109.46783 * 60.00610 * 10 9 7 31 31 H 1.09003 * 109.67822 * 249.20834 * 14 13 11 32 32 H 1.09001 * 109.67901 * 9.75722 * 14 13 11 33 33 H 1.08994 * 109.65713 * 292.57415 * 15 14 13 34 34 H 1.08993 * 109.44329 * 172.36741 * 15 14 13 35 35 H 1.08999 * 109.47448 * 185.25259 * 19 17 16 36 36 H 1.09004 * 109.46672 * 305.25281 * 19 17 16 37 37 H 1.00902 * 111.00469 * 303.95644 * 20 19 17 38 38 H 1.09002 * 109.46762 * 299.99880 * 21 20 19 39 39 H 1.08998 * 109.46940 * 59.99931 * 21 20 19 40 40 H 1.08008 * 127.99998 * 359.95856 * 23 22 21 41 41 H 1.08001 * 126.77317 * 179.97438 * 24 23 22 42 42 H 1.08999 * 109.67472 * 350.24217 * 27 13 11 43 43 H 1.09005 * 109.67999 * 110.75293 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0086 10 6 2.5161 -3.8913 0.0147 11 6 1.9876 -5.3026 0.0216 12 8 0.7914 -5.5023 0.0218 13 7 2.8444 -6.3430 0.0264 14 6 4.2998 -6.1257 0.0191 15 6 4.9150 -6.9636 1.1515 16 8 4.4751 -8.3180 1.0249 17 6 3.0623 -8.4894 1.1594 18 1 2.7374 -8.0983 2.1235 19 6 2.7171 -9.9773 1.0690 20 7 3.2997 -10.6857 2.2164 21 6 2.9886 -12.1204 2.1626 22 6 3.6008 -12.8121 3.3532 23 6 2.9656 -13.1047 4.5819 24 6 3.9271 -13.7230 5.3085 25 8 5.0188 -13.7686 4.5324 26 7 4.8173 -13.2650 3.4516 27 6 2.3521 -7.7298 0.0337 28 1 -0.4850 0.8400 -0.0004 29 1 3.1247 -3.7359 -0.8761 30 1 3.1246 -3.7266 0.9039 31 1 4.7129 -6.4394 -0.9396 32 1 4.5142 -5.0698 0.1840 33 1 4.5976 -6.5663 2.1155 34 1 6.0021 -6.9258 1.0813 35 1 1.6341 -10.1002 1.0779 36 1 3.1220 -10.3886 0.1443 37 1 4.2960 -10.5338 2.2673 38 1 1.9075 -12.2585 2.1789 39 1 3.3956 -12.5463 1.2456 40 1 1.9489 -12.8857 4.8737 41 1 3.8326 -14.1039 6.3147 42 1 1.2762 -7.7364 0.2082 43 1 2.5716 -8.2022 -0.9238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326951407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:02 Heat of formation + Delta-G solvation = -32.938424 kcal Electronic energy + Delta-G solvation = -26262.374290 eV Core-core repulsion = 22243.644485 eV Total energy + Delta-G solvation = -4018.729805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.86462 -41.42255 -39.56560 -37.61336 -35.86371 -34.90725 -34.59424 -33.04005 -32.45890 -31.01546 -29.44848 -27.86380 -27.44895 -25.28736 -24.15520 -24.02683 -22.40340 -21.82435 -20.65438 -19.61364 -18.78943 -18.51040 -18.30722 -17.78595 -17.25361 -16.96433 -16.88920 -16.63014 -16.19614 -16.05586 -15.86757 -15.53137 -15.29743 -14.76984 -14.68536 -14.50607 -14.30953 -14.04503 -13.57255 -13.38554 -13.23922 -13.17323 -13.05730 -12.90087 -12.70377 -12.61892 -12.34761 -12.18817 -11.79874 -11.72811 -11.25038 -11.17548 -11.15114 -10.92080 -10.54004 -10.29072 -9.68456 -9.54271 -8.69241 -8.35650 -6.14413 0.63723 1.20425 1.28329 1.42163 1.43429 1.48220 1.54936 1.94795 2.25904 2.49060 2.64445 2.98662 3.01015 3.20209 3.32847 3.60857 3.64643 3.76490 3.89266 3.95928 4.02458 4.14390 4.24280 4.26302 4.30547 4.37254 4.41571 4.45974 4.49744 4.60575 4.63142 4.67210 4.74979 4.83353 4.90638 4.93734 5.18360 5.32666 5.40888 5.81361 6.06076 6.13045 6.18818 6.19718 7.02613 7.05664 7.35501 8.73545 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026240 B = 0.001742 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.820367 B =16067.312593 C =16182.746134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.150 6.150 10 C -0.125 4.125 11 C 0.536 3.464 12 O -0.561 6.561 13 N -0.614 5.614 14 C 0.067 3.933 15 C 0.052 3.948 16 O -0.384 6.384 17 C 0.090 3.910 18 H 0.059 0.941 19 C 0.077 3.923 20 N -0.686 5.686 21 C 0.139 3.861 22 C 0.004 3.996 23 C -0.232 4.232 24 C -0.047 4.047 25 O 0.085 5.915 26 N -0.398 5.398 27 C 0.086 3.914 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.346 0.654 38 H 0.113 0.887 39 H 0.048 0.952 40 H 0.191 0.809 41 H 0.260 0.740 42 H 0.088 0.912 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.031 -27.326 7.611 30.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.077 5.923 10 C -0.276 4.276 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.349 5.349 14 C -0.056 4.056 15 C -0.025 4.025 16 O -0.303 6.303 17 C 0.031 3.969 18 H 0.077 0.923 19 C -0.053 4.053 20 N -0.319 5.319 21 C 0.010 3.990 22 C -0.154 4.154 23 C -0.254 4.254 24 C -0.128 4.128 25 O 0.020 5.980 26 N -0.104 5.104 27 C -0.038 4.038 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.164 0.836 38 H 0.131 0.869 39 H 0.066 0.934 40 H 0.209 0.791 41 H 0.275 0.725 42 H 0.106 0.894 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.771 -27.572 7.161 30.455 hybrid contribution 1.014 1.427 -0.331 1.781 sum 11.785 -26.146 6.831 29.481 Atomic orbital electron populations 1.70181 1.07979 1.28637 1.47928 1.26132 0.95968 1.03322 0.93702 0.84950 0.78229 0.75984 0.78802 1.19313 1.20342 1.18104 1.23195 0.95372 0.91852 1.58967 0.89792 1.85602 1.10394 0.99250 1.97033 1.23369 1.03607 0.94092 1.06498 1.20162 0.85920 0.86579 0.74972 1.90676 1.17073 1.85691 1.50507 1.48127 1.07477 1.05415 1.73838 1.22836 0.78122 1.03013 1.01581 1.23169 1.01377 0.81253 0.96689 1.87893 1.21899 1.27186 1.93301 1.22385 0.81572 0.96002 0.96960 0.92292 1.21892 1.01274 0.89872 0.92240 1.60446 1.19250 1.08682 1.43475 1.20238 1.01192 0.86261 0.91358 1.23837 0.90736 1.01545 0.99302 1.23088 1.03967 1.05179 0.93186 1.26870 0.84465 1.00890 1.00587 1.84787 1.36585 1.58381 1.18271 1.73859 1.19912 1.14415 1.02247 1.22274 1.00558 0.80623 1.00305 0.91976 0.87266 0.87296 0.88685 0.87704 0.92896 0.84673 0.87711 0.92981 0.83619 0.86902 0.93381 0.79147 0.72458 0.89382 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.70 13.22 21.65 0.29 -55.42 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.55 -30.90 9.50 67.95 0.65 -30.26 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 10 C -0.12 -4.94 4.53 71.24 0.32 -4.62 16 11 C 0.54 20.22 7.73 87.66 0.68 20.90 16 12 O -0.56 -26.16 15.33 -3.02 -0.05 -26.20 16 13 N -0.61 -16.77 3.01 -816.59 -2.46 -19.23 16 14 C 0.07 1.29 6.57 86.49 0.57 1.85 16 15 C 0.05 0.87 7.00 72.22 0.51 1.38 16 16 O -0.38 -7.48 9.91 -148.98 -1.48 -8.95 16 17 C 0.09 1.77 3.01 30.68 0.09 1.87 16 18 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 19 C 0.08 1.18 5.39 86.30 0.47 1.65 16 20 N -0.69 -11.51 6.49 -517.95 -3.36 -14.87 16 21 C 0.14 1.99 6.27 85.55 0.54 2.53 16 22 C 0.00 0.07 6.84 43.58 0.30 0.37 16 23 C -0.23 -2.65 11.12 22.40 0.25 -2.40 16 24 C -0.05 -0.41 12.30 67.17 0.83 0.42 16 25 O 0.08 1.37 11.20 71.68 0.80 2.17 16 26 N -0.40 -8.00 12.07 -49.55 -0.60 -8.60 16 27 C 0.09 1.99 5.92 86.34 0.51 2.50 16 28 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.11 3.89 8.00 -2.40 -0.02 3.87 16 30 H 0.11 3.87 7.67 -2.39 -0.02 3.86 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.93 6.05 -2.39 -0.01 1.92 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.14 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.35 6.68 8.29 -89.69 -0.74 5.94 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.19 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.26 -0.46 8.06 -2.91 -0.02 -0.49 16 42 H 0.09 2.36 7.08 -2.39 -0.02 2.34 16 43 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -80.86 376.97 0.47 -80.40 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.29 Total: 17.56 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 6.16 Total: -2.58 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -6.14 Total: -98.12 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.72 Total: -32.99 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -80.86 0.47 -80.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326951407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.457 kcal (2) G-P(sol) polarization free energy of solvation -80.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds