Wall clock time and date at job start Sat Apr 11 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99887 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99446 * 3 2 1 7 7 C 1.38798 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99325 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00523 * 0.02562 * 7 2 1 10 10 C 1.80993 * 99.99993 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47026 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00136 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99723 * 179.97438 * 11 10 9 14 14 C 1.47153 * 120.98677 * 0.02562 * 13 11 10 15 15 C 1.53291 * 108.38593 * 230.51178 * 14 13 11 16 16 O 1.42963 * 109.22272 * 307.69828 * 15 14 13 17 17 C 1.42962 * 114.16747 * 62.57764 * 16 15 14 18 18 H 1.09000 * 109.51179 * 57.40166 * 17 16 15 19 19 C 1.53002 * 109.51138 * 177.49377 * 17 16 15 20 20 N 1.46897 * 109.47427 * 300.00306 * 19 17 16 21 21 C 1.46899 * 111.00080 * 179.97438 * 20 19 17 22 22 C 1.50699 * 109.47255 * 180.02562 * 21 20 19 23 23 C 1.41388 * 126.80255 * 94.70965 * 22 21 20 24 24 C 1.35444 * 103.98516 * 179.89172 * 23 22 21 25 25 O 1.34045 * 106.44859 * 0.36825 * 24 23 22 26 26 N 1.20920 * 111.56204 * 359.75318 * 25 24 23 27 27 C 1.47160 * 120.97817 * 179.71693 * 13 11 10 28 28 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47224 * 299.99934 * 10 9 7 30 30 H 1.09006 * 109.47317 * 59.99980 * 10 9 7 31 31 H 1.08993 * 109.67808 * 350.23538 * 14 13 11 32 32 H 1.09002 * 109.67881 * 110.78429 * 14 13 11 33 33 H 1.09000 * 109.51434 * 67.61863 * 15 14 13 34 34 H 1.08995 * 109.51064 * 187.77509 * 15 14 13 35 35 H 1.09003 * 109.47136 * 60.00617 * 19 17 16 36 36 H 1.08996 * 109.47025 * 180.02562 * 19 17 16 37 37 H 1.00907 * 111.00188 * 56.04847 * 20 19 17 38 38 H 1.09003 * 109.47583 * 300.00154 * 21 20 19 39 39 H 1.09004 * 109.47075 * 60.00449 * 21 20 19 40 40 H 1.08001 * 128.00393 * 0.02562 * 23 22 21 41 41 H 1.07999 * 126.77453 * 180.10078 * 24 23 22 42 42 H 1.08996 * 109.68028 * 249.21201 * 27 13 11 43 43 H 1.08998 * 109.68171 * 9.77182 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1042 1.6962 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3431 0.0008 14 6 4.2993 -6.1260 0.0003 15 6 4.9136 -6.9695 -1.1227 16 8 4.4737 -8.3232 -0.9891 17 6 3.0607 -8.4952 -1.1216 18 1 2.7360 -8.1091 -2.0879 19 6 2.7156 -9.9825 -1.0236 20 7 3.4004 -10.7159 -2.0965 21 6 3.0922 -12.1508 -2.0332 22 6 3.8112 -12.8687 -3.1462 23 6 5.0668 -13.5137 -3.0658 24 6 5.2664 -13.9984 -4.3147 25 8 4.1967 -13.6374 -5.0373 26 7 3.4021 -13.0128 -4.3735 27 6 2.3515 -7.7299 0.0076 28 1 -0.4850 0.8401 -0.0004 29 1 3.1243 -3.7314 -0.8895 30 1 3.1243 -3.7314 0.8906 31 1 4.5130 -5.0715 -0.1738 32 1 4.7165 -6.4322 0.9596 33 1 4.5955 -6.5770 -2.0885 34 1 6.0007 -6.9314 -1.0535 35 1 3.0389 -10.3676 -0.0565 36 1 1.6382 -10.1130 -1.1252 37 1 4.3966 -10.5587 -2.0632 38 1 3.4184 -12.5507 -1.0731 39 1 2.0173 -12.2966 -2.1412 40 1 5.7155 -13.6016 -2.2067 41 1 6.1209 -14.5607 -4.6611 42 1 2.5763 -8.1945 0.9676 43 1 1.2748 -7.7380 -0.1617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326951408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:04 Heat of formation + Delta-G solvation = -32.834398 kcal Electronic energy + Delta-G solvation = -26268.465062 eV Core-core repulsion = 22249.739768 eV Total energy + Delta-G solvation = -4018.725294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.86283 -41.41755 -39.56262 -37.60935 -35.85981 -34.88906 -34.59510 -33.00832 -32.46683 -31.02359 -29.45615 -27.85912 -27.44138 -25.28373 -24.19498 -23.93040 -22.41947 -21.89102 -20.66213 -19.61529 -18.72053 -18.50292 -18.30786 -17.76228 -17.32400 -16.99136 -16.88934 -16.70851 -16.18483 -15.90498 -15.68353 -15.54399 -15.23684 -14.86693 -14.72266 -14.52581 -14.30492 -14.20043 -13.59543 -13.43281 -13.19173 -13.11036 -13.04514 -12.87324 -12.67666 -12.63597 -12.31483 -12.14675 -11.80825 -11.74725 -11.24470 -11.16046 -11.13704 -10.92248 -10.53490 -10.29562 -9.67595 -9.48818 -8.69805 -8.35514 -6.14674 0.67036 1.20183 1.28452 1.43273 1.43596 1.47915 1.53822 1.94751 2.26092 2.51507 2.64300 2.98685 3.04888 3.20190 3.30525 3.60296 3.68656 3.80886 3.89587 3.96112 4.02650 4.14779 4.23980 4.25527 4.31237 4.38701 4.41724 4.43534 4.47858 4.60718 4.64497 4.73035 4.76148 4.84855 4.86714 4.94039 5.18535 5.33203 5.40350 5.83728 6.05783 6.13611 6.18626 6.32769 7.02513 7.05488 7.41196 8.73449 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.001737 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.633338 B =16111.843113 C =16265.741426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.280 1.280 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.152 6.152 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.563 6.563 13 N -0.614 5.614 14 C 0.066 3.934 15 C 0.052 3.948 16 O -0.378 6.378 17 C 0.091 3.909 18 H 0.052 0.948 19 C 0.078 3.922 20 N -0.693 5.693 21 C 0.139 3.861 22 C 0.001 3.999 23 C -0.238 4.238 24 C -0.048 4.048 25 O 0.084 5.916 26 N -0.392 5.392 27 C 0.085 3.915 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.140 0.860 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.353 0.647 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.197 0.803 41 H 0.260 0.740 42 H 0.093 0.907 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.808 -28.614 -2.741 34.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.205 1.205 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.075 5.925 10 C -0.275 4.275 11 C 0.322 3.678 12 O -0.441 6.441 13 N -0.349 5.349 14 C -0.056 4.056 15 C -0.025 4.025 16 O -0.297 6.297 17 C 0.032 3.968 18 H 0.070 0.930 19 C -0.051 4.051 20 N -0.326 5.326 21 C 0.009 3.991 22 C -0.158 4.158 23 C -0.260 4.260 24 C -0.129 4.129 25 O 0.018 5.982 26 N -0.097 5.097 27 C -0.038 4.038 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.158 0.842 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.173 0.827 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.214 0.786 41 H 0.276 0.724 42 H 0.111 0.889 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.424 -28.454 -3.837 32.592 hybrid contribution 2.158 1.215 1.214 2.758 sum 17.581 -27.239 -2.623 32.526 Atomic orbital electron populations 1.70185 1.08016 1.28697 1.47861 1.26147 0.95969 1.03363 0.93675 0.84993 0.77797 0.75595 0.79553 1.20477 1.18529 1.18611 1.23164 0.95381 0.91811 1.59090 0.89727 1.85626 1.10488 0.99325 1.97046 1.23364 1.03566 0.94032 1.06524 1.20189 0.85929 0.86654 0.74980 1.90680 1.17176 1.85720 1.50553 1.48135 1.07553 1.05378 1.73810 1.22769 0.78012 1.03001 1.01815 1.23100 1.01523 0.81280 0.96557 1.87858 1.21490 1.27143 1.93182 1.22441 0.81797 0.95967 0.96579 0.92994 1.21856 0.99997 0.89648 0.93592 1.60284 1.16017 1.07732 1.48595 1.20183 0.99506 0.86358 0.93005 1.23853 0.96380 1.02029 0.93506 1.23136 0.97718 1.04063 1.01043 1.26910 0.93795 1.01112 0.91069 1.84824 1.24344 1.52019 1.36994 1.73898 1.16018 1.12919 1.06914 1.22385 1.00403 0.80618 1.00367 0.91989 0.87315 0.87146 0.87811 0.88428 0.93310 0.84237 0.92027 0.88926 0.82744 0.90323 0.90027 0.78632 0.72423 0.88878 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.04 13.22 21.65 0.29 -55.76 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 4 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.55 -31.04 9.50 67.95 0.65 -30.40 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.48 20.57 -56.49 -1.16 -9.65 16 10 C -0.12 -4.93 4.53 71.24 0.32 -4.61 16 11 C 0.53 20.38 7.73 87.66 0.68 21.05 16 12 O -0.56 -26.66 15.33 -3.02 -0.05 -26.71 16 13 N -0.61 -16.76 3.01 -816.46 -2.46 -19.22 16 14 C 0.07 1.23 6.54 86.35 0.56 1.79 16 15 C 0.05 0.82 6.98 72.08 0.50 1.33 16 16 O -0.38 -6.78 9.72 -148.98 -1.45 -8.23 16 17 C 0.09 1.81 3.07 30.85 0.09 1.90 16 18 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 19 C 0.08 1.22 5.42 86.30 0.47 1.68 16 20 N -0.69 -11.56 6.49 -517.93 -3.36 -14.93 16 21 C 0.14 1.98 6.27 85.56 0.54 2.52 16 22 C 0.00 0.02 6.84 43.58 0.30 0.32 16 23 C -0.24 -2.30 11.12 22.40 0.25 -2.05 16 24 C -0.05 -0.38 12.30 67.17 0.83 0.45 16 25 O 0.08 1.41 11.20 71.59 0.80 2.21 16 26 N -0.39 -8.49 12.07 -49.55 -0.60 -9.08 16 27 C 0.09 1.99 5.96 86.51 0.52 2.51 16 28 H 0.27 15.52 8.31 -92.70 -0.77 14.74 16 29 H 0.11 3.89 7.66 -2.39 -0.02 3.87 16 30 H 0.11 3.93 8.02 -2.39 -0.02 3.91 16 31 H 0.10 1.86 6.05 -2.39 -0.01 1.85 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.35 5.68 8.11 -89.69 -0.73 4.96 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 39 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 41 H 0.26 -0.71 8.06 -2.91 -0.02 -0.74 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 2.32 7.08 -2.39 -0.02 2.30 16 Total: -1.00 -83.23 376.67 0.51 -82.71 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.31 Total: 15.63 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 6.17 Total: -2.28 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -6.13 Total: -98.99 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.69 Total: -32.72 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.65 kcal Total: -83.23 0.51 -82.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326951408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.878 kcal (2) G-P(sol) polarization free energy of solvation -83.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds