Wall clock time and date at job start Sat Apr 11 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33820 * 124.52055 * 2 1 4 4 C 1.37478 * 115.10437 * 179.70599 * 3 2 1 5 5 C 1.36654 * 113.28988 * 0.49137 * 4 3 2 6 6 C 1.46582 * 125.45205 * 179.80182 * 5 4 3 7 7 O 1.21704 * 120.00406 * 359.71868 * 6 5 4 8 8 N 1.34778 * 119.99734 * 179.71783 * 6 5 4 9 9 C 1.46492 * 120.00064 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47199 * 180.02562 * 9 8 6 11 11 O 1.21273 * 120.00280 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00160 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00398 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47346 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47177 * 65.00353 * 14 13 12 16 16 C 1.53006 * 109.47133 * 185.00123 * 14 13 12 17 17 O 1.42903 * 109.47139 * 55.00254 * 16 14 13 18 18 N 1.46493 * 109.47542 * 305.00099 * 14 13 12 19 19 C 1.36936 * 120.00314 * 154.99721 * 18 14 13 20 20 H 1.08001 * 120.00159 * 0.02562 * 19 18 14 21 21 C 1.38811 * 119.99842 * 180.02562 * 19 18 14 22 22 N 1.31624 * 119.99540 * 179.72505 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72270 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72118 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72153 * 23 21 19 27 27 S 1.70611 * 124.52635 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.46470 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47351 * 300.00011 * 1 2 3 30 30 H 1.09001 * 109.47126 * 60.00568 * 1 2 3 31 31 H 1.08005 * 122.44807 * 359.94872 * 3 2 1 32 32 H 1.07986 * 123.35382 * 180.28918 * 4 3 2 33 33 H 0.97000 * 119.99915 * 0.02562 * 8 6 5 34 34 H 1.08997 * 109.47737 * 59.99675 * 9 8 6 35 35 H 1.09008 * 109.47084 * 299.99756 * 9 8 6 36 36 H 0.96998 * 119.99643 * 359.97438 * 12 10 9 37 37 H 1.09009 * 109.46774 * 60.00205 * 13 12 10 38 38 H 1.09002 * 109.47338 * 300.00832 * 13 12 10 39 39 H 1.08997 * 109.47285 * 175.00337 * 16 14 13 40 40 H 1.09002 * 109.47155 * 295.00382 * 16 14 13 41 41 H 0.96700 * 113.99965 * 180.02562 * 17 16 14 42 42 H 0.97000 * 120.00040 * 334.99853 * 18 14 13 43 43 H 0.96999 * 119.99889 * 180.27497 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6216 0.8777 0.0064 5 6 3.9493 -0.4490 0.0009 6 6 5.3124 -0.9880 0.0014 7 8 6.2659 -0.2318 0.0020 8 7 5.5098 -2.3213 0.0013 9 6 6.8720 -2.8601 0.0024 10 6 6.8166 -4.3661 0.0014 11 8 5.7448 -4.9335 0.0004 12 7 7.9582 -5.0825 0.0017 13 6 7.9044 -6.5465 0.0013 14 6 9.3271 -7.1092 0.0023 15 1 9.8239 -6.8392 0.9342 16 6 9.2729 -8.6331 -0.1239 17 8 8.5205 -8.9884 -1.2856 18 7 10.0736 -6.5518 -1.1282 19 6 11.4396 -6.4735 -1.0749 20 1 11.9668 -6.8229 -0.1995 21 6 12.1468 -5.9449 -2.1460 22 7 13.4595 -5.8646 -2.0925 23 14 11.2351 -5.3398 -3.6599 24 1 11.0943 -6.4542 -4.6312 25 1 9.8884 -4.8538 -3.2655 26 1 11.9977 -4.2303 -4.2866 27 16 2.4740 -1.4056 0.0006 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8428 2.0965 -0.0008 32 1 4.3549 1.6704 0.0117 33 1 4.7498 -2.9241 0.0005 34 1 7.3982 -2.5161 0.8929 35 1 7.3997 -2.5157 -0.8871 36 1 8.8155 -4.6287 0.0021 37 1 7.3779 -6.8904 -0.8891 38 1 7.3771 -6.8910 0.8909 39 1 10.2855 -9.0265 -0.2124 40 1 8.7956 -9.0542 0.7610 41 1 8.4444 -9.9418 -1.4285 42 1 9.6002 -6.2383 -1.9147 43 1 13.9535 -5.4915 -2.8393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331818212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:16 Heat of formation + Delta-G solvation = -76.464822 kcal Electronic energy + Delta-G solvation = -26366.270146 eV Core-core repulsion = 22345.652895 eV Total energy + Delta-G solvation = -4020.617251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27843 -39.33671 -38.02206 -37.33944 -35.19088 -34.56229 -33.68457 -32.47391 -31.63041 -29.56445 -28.58941 -26.94817 -24.97876 -23.81882 -23.30772 -21.64735 -20.56172 -20.22498 -19.60055 -18.41045 -17.96965 -16.95139 -16.87314 -16.46499 -16.06641 -15.96794 -15.54412 -15.16537 -14.92531 -14.56582 -14.30100 -14.18835 -13.85355 -13.56698 -13.49127 -13.40313 -13.08487 -12.90372 -12.74951 -12.73250 -12.42560 -12.24408 -12.19148 -11.66369 -11.25048 -11.06035 -10.90026 -10.78074 -10.34544 -10.17268 -9.95609 -9.68710 -9.52599 -9.45007 -9.04944 -8.98005 -8.93105 -8.87079 -7.40073 -5.86662 -3.23798 0.17097 1.10788 1.52360 2.05517 2.58514 2.67508 2.98156 3.33659 3.39424 3.42590 3.45715 4.34250 4.52181 4.54648 4.72966 4.74607 4.78764 4.96348 5.03063 5.14177 5.21106 5.21602 5.27279 5.29529 5.41162 5.44874 5.64062 5.73303 5.80919 5.84546 5.86600 6.00135 6.02490 6.13162 6.31866 6.52656 6.61851 7.21192 7.59449 7.85882 7.91535 8.05113 8.21681 8.32041 9.09388 9.81941 10.01279 11.30814 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.002302 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.955564 B =12159.499116 C =13246.732015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.196 4.196 3 C -0.159 4.159 4 C -0.048 4.048 5 C -0.271 4.271 6 C 0.593 3.407 7 O -0.528 6.528 8 N -0.713 5.713 9 C 0.098 3.902 10 C 0.506 3.494 11 O -0.550 6.550 12 N -0.708 5.708 13 C 0.115 3.885 14 C 0.171 3.829 15 H 0.076 0.924 16 C 0.059 3.941 17 O -0.566 6.566 18 N -0.738 5.738 19 C -0.253 4.253 20 H 0.091 0.909 21 C 0.011 3.989 22 N -0.929 5.929 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.277 1.277 26 H -0.291 1.291 27 S 0.210 5.790 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.409 0.591 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.413 0.587 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.031 0.969 41 H 0.367 0.633 42 H 0.366 0.634 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.796 7.973 6.759 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.316 4.316 3 C -0.190 4.190 4 C -0.082 4.082 5 C -0.391 4.391 6 C 0.379 3.621 7 O -0.406 6.406 8 N -0.368 5.368 9 C -0.029 4.029 10 C 0.291 3.709 11 O -0.429 6.429 12 N -0.360 5.360 13 C -0.009 4.009 14 C 0.060 3.940 15 H 0.093 0.907 16 C -0.022 4.022 17 O -0.369 6.369 18 N -0.382 5.382 19 C -0.382 4.382 20 H 0.109 0.891 21 C -0.186 4.186 22 N -0.576 5.576 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.203 1.203 26 H -0.218 1.218 27 S 0.478 5.522 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.247 0.753 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.250 0.750 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.212 0.788 42 H 0.199 0.801 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.932 7.165 6.779 26.812 hybrid contribution 0.038 1.198 -1.134 1.650 sum -24.893 8.363 5.645 26.860 Atomic orbital electron populations 1.20403 0.87330 1.03280 1.03422 1.24317 1.01666 0.97936 1.07657 1.19944 0.92589 0.99693 1.06758 1.20759 0.96226 0.95092 0.96074 1.24484 0.96680 0.98176 1.19754 1.16885 0.87034 0.81766 0.76432 1.90857 1.41731 1.57977 1.50085 1.45532 1.09036 1.06609 1.75642 1.21132 0.84919 0.91233 1.05576 1.20360 0.84644 0.89185 0.76671 1.90663 1.29054 1.72172 1.51041 1.45932 1.08881 1.08032 1.73130 1.21658 0.98473 0.78256 1.02495 1.20577 0.89946 0.90227 0.93204 0.90655 1.22998 0.94933 0.98231 0.86042 1.86512 1.75747 1.27421 1.47251 1.42730 1.04292 1.74549 1.16597 1.19026 0.80649 1.35667 1.02873 0.89138 1.24658 0.95186 1.00847 0.97906 1.69699 1.05025 1.50632 1.32228 0.86554 0.78981 0.78557 0.84332 1.21078 1.20343 1.21770 1.83223 0.94104 1.07185 1.67704 0.91175 0.90160 0.90147 0.83753 0.82833 0.75319 0.87794 0.87764 0.75024 0.90406 0.91443 0.92691 0.95086 0.78804 0.80069 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.33 36.01 0.37 -0.04 16 2 C -0.20 -1.49 6.28 -35.86 -0.23 -1.72 16 3 C -0.16 -1.27 10.00 -41.41 -0.41 -1.69 16 4 C -0.05 -0.48 10.01 -40.43 -0.40 -0.89 16 5 C -0.27 -3.06 6.45 -36.79 -0.24 -3.30 16 6 C 0.59 8.10 7.78 -12.89 -0.10 8.00 16 7 O -0.53 -8.74 16.84 5.19 0.09 -8.65 16 8 N -0.71 -9.15 5.52 -62.83 -0.35 -9.50 16 9 C 0.10 1.26 6.15 -5.20 -0.03 1.23 16 10 C 0.51 7.42 7.90 -10.98 -0.09 7.34 16 11 O -0.55 -9.27 15.67 5.56 0.09 -9.19 16 12 N -0.71 -10.55 5.39 -60.30 -0.32 -10.88 16 13 C 0.12 1.81 5.12 -4.05 -0.02 1.78 16 14 C 0.17 2.95 2.84 -67.93 -0.19 2.76 16 15 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 16 C 0.06 0.93 6.86 37.16 0.25 1.19 16 17 O -0.57 -9.04 12.64 -35.23 -0.45 -9.48 16 18 N -0.74 -16.00 4.31 -53.43 -0.23 -16.23 16 19 C -0.25 -6.59 10.41 -15.06 -0.16 -6.74 16 20 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 21 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 22 N -0.93 -28.09 13.97 55.49 0.78 -27.31 16 23 Si 0.89 21.77 27.74 -169.99 -4.72 17.06 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.42 6.51 56.52 0.37 -6.06 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 S 0.21 1.85 22.08 -107.50 -2.37 -0.52 16 28 H 0.07 0.29 8.11 -51.93 -0.42 -0.13 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 32 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.41 5.02 6.55 -40.82 -0.27 4.75 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.10 1.34 8.14 -51.92 -0.42 0.91 16 36 H 0.41 6.12 8.14 -40.82 -0.33 5.78 16 37 H 0.08 1.37 7.40 -51.92 -0.38 0.98 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.37 4.12 9.12 45.56 0.42 4.54 16 42 H 0.37 8.25 5.65 -40.82 -0.23 8.02 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -34.34 383.04 -8.09 -42.43 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -5.04 Total: 18.38 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -1.34 Total: 8.12 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.13 Total: -63.92 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.27 Total: -27.33 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.37 Total: -0.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.34 -8.09 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331818212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.037 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds