Wall clock time and date at job start Sat Apr 11 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38130 * 126.29671 * 2 1 4 4 C 1.47279 * 126.42503 * 0.02562 * 3 2 1 5 5 O 1.21531 * 120.00271 * 0.02562 * 4 3 2 6 6 O 1.34763 * 119.99821 * 179.97438 * 4 3 2 7 7 C 1.35965 * 117.00059 * 185.76995 * 6 4 3 8 8 C 1.38755 * 120.14568 * 69.05210 * 7 6 4 9 9 C 1.37889 * 120.31835 * 180.02562 * 8 7 6 10 10 C 1.39373 * 120.20161 * 0.25439 * 9 8 7 11 11 C 1.38903 * 119.03765 * 359.49397 * 10 9 8 12 12 C 1.37643 * 120.86049 * 0.51008 * 11 10 9 13 13 C 1.51148 * 106.35150 * 180.31213 * 11 10 9 14 14 C 1.51395 * 104.09339 * 359.64218 * 13 11 10 15 15 O 1.21296 * 126.43532 * 179.97438 * 14 13 11 16 16 N 1.34360 * 107.12310 * 0.49624 * 14 13 11 17 17 C 1.41345 * 107.14295 * 180.28173 * 3 2 1 18 18 N 1.30426 * 108.01500 * 359.55058 * 17 3 2 19 19 N 1.34236 * 126.29489 * 180.02562 * 2 1 3 20 20 C 1.46501 * 125.74314 * 359.96817 * 19 2 1 21 21 C 1.50702 * 109.47460 * 89.99490 * 20 19 2 22 22 H 1.07995 * 119.99692 * 0.02562 * 21 20 19 23 23 C 1.37876 * 119.99944 * 179.97438 * 21 20 19 24 24 N 1.31508 * 119.99813 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00056 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47093 * 89.99851 * 25 23 21 27 27 H 1.48495 * 109.47172 * 209.99839 * 25 23 21 28 28 H 1.48503 * 109.47037 * 330.00225 * 25 23 21 29 29 H 1.09005 * 109.46793 * 89.97454 * 1 2 3 30 30 H 1.09000 * 109.47618 * 209.97756 * 1 2 3 31 31 H 1.09005 * 109.47324 * 329.98281 * 1 2 3 32 32 H 1.08008 * 119.84130 * 0.02562 * 8 7 6 33 33 H 1.07992 * 119.90262 * 179.97438 * 9 8 7 34 34 H 1.07997 * 120.06728 * 179.75790 * 12 11 10 35 35 H 1.09001 * 110.50723 * 118.88882 * 13 11 10 36 36 H 1.09003 * 110.50554 * 241.58206 * 13 11 10 37 37 H 0.97008 * 123.87868 * 179.57642 * 16 14 13 38 38 H 1.08003 * 125.98866 * 179.73701 * 17 3 2 39 39 H 1.09008 * 109.46658 * 209.99734 * 20 19 2 40 40 H 1.08997 * 109.46690 * 329.98860 * 20 19 2 41 41 H 0.96997 * 119.99998 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5196 0.0005 5 8 0.7018 2.7873 0.0015 6 8 2.8015 3.5096 0.0010 7 6 2.3349 4.7808 0.1233 8 6 1.7767 5.2061 1.3203 9 6 1.3019 6.4943 1.4480 10 6 1.3743 7.3781 0.3728 11 6 1.9397 6.9444 -0.8195 12 6 2.4143 5.6589 -0.9494 13 6 1.8785 8.1173 -1.7709 14 6 1.2151 9.2127 -0.9635 15 8 0.9664 10.3375 -1.3431 16 7 0.9640 8.7083 0.2563 17 6 3.6599 0.6495 -0.0066 18 7 3.6340 -0.6545 -0.0006 19 7 2.3016 -1.0819 -0.0005 20 6 1.8498 -2.4755 -0.0004 21 6 1.6941 -2.9532 -1.4212 22 1 1.9105 -2.2857 -2.2421 23 6 1.2764 -4.2429 -1.6730 24 7 1.1401 -4.6596 -2.9129 25 14 0.9029 -5.3977 -0.2531 26 1 -0.5281 -5.2724 0.1236 27 1 1.1857 -6.7961 -0.6648 28 1 1.7540 -5.0426 0.9109 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8899 0.5141 32 1 1.7139 4.5248 2.1560 33 1 0.8684 6.8181 2.3826 34 1 2.8480 5.3340 -1.8836 35 1 2.8817 8.4118 -2.0789 36 1 1.2677 7.8726 -2.6399 37 1 0.5453 9.2100 0.9732 38 1 4.5461 1.2668 -0.0124 39 1 2.5847 -3.0956 0.5130 40 1 0.8915 -2.5467 0.5140 41 1 0.8466 -5.5669 -3.0901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332085440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:20 Heat of formation + Delta-G solvation = -19.292519 kcal Electronic energy + Delta-G solvation = -27778.282772 eV Core-core repulsion = 23624.700747 eV Total energy + Delta-G solvation = -4153.582025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.72496 -42.40284 -41.55790 -39.33301 -37.93668 -36.14280 -35.77168 -34.03914 -33.39268 -32.97839 -30.60741 -29.73158 -28.98396 -28.34809 -25.50620 -24.46995 -23.56965 -22.89032 -22.24736 -21.56967 -20.52527 -19.28431 -19.09953 -19.04940 -18.33662 -17.85525 -17.12051 -17.07798 -16.86785 -16.45881 -15.91894 -15.68666 -15.47551 -15.18982 -14.98500 -14.88632 -14.52282 -14.29228 -14.19930 -14.17662 -13.85711 -13.78595 -13.71896 -13.44144 -13.17812 -13.08304 -12.85311 -12.55431 -12.17922 -12.03125 -11.84290 -11.78603 -11.64024 -11.39515 -11.31647 -10.90519 -10.33787 -9.98592 -9.69231 -9.04184 -8.41824 -6.54311 -0.17331 0.21067 0.37116 1.14764 1.21404 1.35965 1.36616 1.45902 1.52803 1.89042 1.95585 2.17075 2.25961 2.68437 2.90672 3.06429 3.33071 3.62165 3.67101 3.77809 3.90336 4.06259 4.07461 4.20552 4.32027 4.39974 4.47031 4.49019 4.65520 4.67879 4.75920 4.81267 4.91856 4.98155 5.05592 5.09317 5.17657 5.27929 5.29548 5.54183 5.56173 5.70603 5.77195 5.87783 6.17029 6.49039 6.68137 6.87327 6.92310 7.09596 8.74376 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028773 B = 0.002011 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.911468 B =13922.073536 C =14037.803742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.167 3.833 3 C -0.319 4.319 4 C 0.556 3.444 5 O -0.523 6.523 6 O -0.283 6.283 7 C 0.048 3.952 8 C -0.095 4.095 9 C -0.112 4.112 10 C 0.135 3.865 11 C -0.130 4.130 12 C -0.068 4.068 13 C -0.108 4.108 14 C 0.528 3.472 15 O -0.544 6.544 16 N -0.648 5.648 17 C 0.100 3.900 18 N -0.331 5.331 19 N -0.333 5.333 20 C 0.232 3.768 21 C -0.554 4.554 22 H 0.028 0.972 23 C 0.023 3.977 24 N -0.934 5.934 25 Si 0.948 3.052 26 H -0.251 1.251 27 H -0.280 1.280 28 H -0.241 1.241 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.142 0.858 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.424 0.576 38 H 0.226 0.774 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 22.280 11.052 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.031 3.969 3 C -0.332 4.332 4 C 0.404 3.596 5 O -0.413 6.413 6 O -0.198 6.198 7 C 0.006 3.994 8 C -0.114 4.114 9 C -0.133 4.133 10 C 0.038 3.962 11 C -0.133 4.133 12 C -0.087 4.087 13 C -0.146 4.146 14 C 0.318 3.682 15 O -0.422 6.422 16 N -0.291 5.291 17 C -0.087 4.087 18 N -0.150 5.150 19 N -0.108 5.108 20 C 0.112 3.888 21 C -0.592 4.592 22 H 0.046 0.954 23 C -0.177 4.177 24 N -0.572 5.572 25 Si 0.769 3.231 26 H -0.175 1.175 27 H -0.206 1.206 28 H -0.164 1.164 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.264 0.736 38 H 0.243 0.757 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.712 21.600 10.607 24.075 hybrid contribution -0.721 0.037 0.210 0.752 sum -0.009 21.637 10.817 24.190 Atomic orbital electron populations 1.20721 0.84905 1.05218 1.04434 1.21963 0.96126 0.86227 0.92630 1.18919 0.93948 0.89480 1.30841 1.20099 0.83363 0.84534 0.71577 1.90791 1.18124 1.84197 1.48139 1.84676 1.38017 1.13380 1.83687 1.18569 1.03214 0.82771 0.94863 1.21213 0.96527 0.96564 0.97077 1.20396 1.02834 0.91394 0.98638 1.18286 0.97387 0.84607 0.95950 1.19637 1.03206 0.94851 0.95573 1.20251 0.98658 0.91511 0.98266 1.21138 1.05488 0.89447 0.98570 1.20893 0.77111 0.87783 0.82447 1.90820 1.55411 1.21175 1.74772 1.43707 1.58566 1.11156 1.15718 1.24604 0.97844 0.91255 0.95006 1.77191 0.97842 1.14217 1.25738 1.48843 1.03529 1.07459 1.50997 1.19992 0.97148 0.74079 0.97555 1.21166 1.48209 0.98888 0.90915 0.95405 1.25813 0.93666 0.99246 0.98999 1.70019 1.46517 1.19064 1.21611 0.85717 0.80523 0.77765 0.79096 1.17521 1.20561 1.16387 0.89770 0.89397 0.87388 0.84044 0.82070 0.83132 0.83319 0.84185 0.73642 0.75734 0.92259 0.90565 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.94 9.57 71.24 0.68 -2.26 16 2 C 0.17 6.11 7.01 42.17 0.30 6.41 16 3 C -0.32 -10.60 6.13 -20.16 -0.12 -10.72 16 4 C 0.56 16.63 7.73 70.20 0.54 17.18 16 5 O -0.52 -17.01 14.30 19.74 0.28 -16.72 16 6 O -0.28 -7.11 9.89 -0.92 -0.01 -7.12 16 7 C 0.05 1.03 5.29 22.54 0.12 1.15 16 8 C -0.09 -1.69 9.31 22.31 0.21 -1.49 16 9 C -0.11 -1.50 10.07 22.46 0.23 -1.27 16 10 C 0.13 1.90 7.11 38.32 0.27 2.18 16 11 C -0.13 -1.92 6.34 -19.70 -0.12 -2.04 16 12 C -0.07 -1.20 9.98 22.28 0.22 -0.98 16 13 C -0.11 -1.22 6.88 29.46 0.20 -1.02 16 14 C 0.53 8.61 8.71 87.94 0.77 9.38 16 15 O -0.54 -12.99 18.03 -3.08 -0.06 -13.04 16 16 N -0.65 -8.16 5.89 -303.09 -1.78 -9.95 16 17 C 0.10 3.23 11.87 85.67 1.02 4.25 16 18 N -0.33 -13.30 12.50 -56.25 -0.70 -14.00 16 19 N -0.33 -13.82 3.56 -336.64 -1.20 -15.02 16 20 C 0.23 10.11 5.03 85.63 0.43 10.54 16 21 C -0.55 -29.99 9.94 25.60 0.25 -29.73 16 22 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 23 C 0.02 1.24 5.47 84.66 0.46 1.70 16 24 N -0.93 -54.95 13.96 21.45 0.30 -54.65 16 25 Si 0.95 38.66 27.47 68.60 1.88 40.54 16 26 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 27 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 29 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 30 H 0.09 2.47 7.05 -2.39 -0.02 2.45 16 31 H 0.11 3.03 6.50 -2.38 -0.02 3.02 16 32 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.42 3.55 8.96 -92.70 -0.83 2.72 16 38 H 0.23 5.17 8.06 -2.91 -0.02 5.15 16 39 H 0.06 2.56 7.20 -2.38 -0.02 2.54 16 40 H 0.08 2.90 6.44 -2.39 -0.02 2.89 16 41 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -73.53 361.97 4.39 -69.14 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.22 Total: 17.56 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.45 Total: 3.27 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -3.39 Total: -93.62 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: 0.22 Total: -36.89 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.88 Total: 40.54 kcal Total: -73.53 4.39 -69.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332085440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.851 kcal (2) G-P(sol) polarization free energy of solvation -73.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds