Wall clock time and date at job start Sat Apr 11 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35317 * 128.04095 * 2 1 4 4 O 1.34011 * 106.66981 * 180.22901 * 3 2 1 5 5 N 1.20903 * 111.84453 * 359.76003 * 4 3 2 6 6 C 1.30978 * 111.44281 * 359.97438 * 5 4 3 7 7 C 1.48333 * 126.94123 * 179.97438 * 6 5 4 8 8 O 1.21492 * 120.00334 * 185.90376 * 7 6 5 9 9 N 1.34779 * 119.99640 * 5.90545 * 7 6 5 10 10 C 1.46494 * 120.00170 * 5.37956 * 9 7 6 11 11 C 1.46504 * 119.99961 * 185.38089 * 9 7 6 12 12 H 1.09008 * 109.46887 * 0.02562 * 11 9 7 13 13 C 1.53001 * 109.47096 * 240.00092 * 11 9 7 14 14 C 1.52997 * 109.47088 * 119.99704 * 11 9 7 15 15 N 1.46497 * 109.47382 * 305.00013 * 14 11 9 16 16 C 1.34778 * 120.00058 * 179.97438 * 15 14 11 17 17 O 1.21286 * 119.99580 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00118 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.47073 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99914 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99937 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00074 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00115 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47184 * 90.00130 * 24 22 20 26 26 H 1.48503 * 109.47323 * 210.00012 * 24 22 20 27 27 H 1.48501 * 109.47439 * 330.00130 * 24 22 20 28 28 H 1.09000 * 109.46973 * 270.14909 * 1 2 3 29 29 H 1.08997 * 109.47279 * 30.14857 * 1 2 3 30 30 H 1.08999 * 109.47328 * 150.15371 * 1 2 3 31 31 H 1.07997 * 126.66135 * 359.96364 * 3 2 1 32 32 H 1.08998 * 109.47331 * 275.36907 * 10 9 7 33 33 H 1.09005 * 109.47190 * 35.37130 * 10 9 7 34 34 H 1.09001 * 109.47178 * 155.36757 * 10 9 7 35 35 H 1.08992 * 109.46866 * 299.99793 * 13 11 9 36 36 H 1.09005 * 109.47075 * 59.99951 * 13 11 9 37 37 H 1.09002 * 109.46921 * 179.97438 * 13 11 9 38 38 H 1.09003 * 109.46949 * 65.00546 * 14 11 9 39 39 H 1.09000 * 109.47054 * 184.99967 * 14 11 9 40 40 H 0.96996 * 119.99782 * 0.02562 * 15 14 11 41 41 H 1.09000 * 109.46919 * 300.00230 * 18 16 15 42 42 H 1.09000 * 109.47111 * 60.00073 * 18 16 15 43 43 H 0.97000 * 120.00542 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5774 -0.0051 5 7 3.5988 -0.6316 -0.0034 6 6 2.3837 -1.1205 0.0035 7 6 1.9992 -2.5531 0.0070 8 8 0.8304 -2.8687 -0.0947 9 7 2.9465 -3.5048 0.1231 10 6 4.3407 -3.1250 0.3638 11 6 2.5819 -4.9191 0.0084 12 1 1.5098 -5.0047 -0.1692 13 6 2.9443 -5.6459 1.3050 14 6 3.3436 -5.5490 -1.1595 15 7 3.0896 -4.7795 -2.3800 16 6 3.6611 -5.1517 -3.5424 17 8 4.3852 -6.1240 -3.5782 18 6 3.4003 -4.3599 -4.7978 19 16 4.3025 -5.1044 -6.1791 20 6 3.8302 -4.0112 -7.4777 21 1 3.1681 -3.1830 -7.2724 22 6 4.3089 -4.2145 -8.7646 23 7 5.1153 -5.2241 -9.0150 24 14 3.8086 -3.0551 -10.1412 25 1 4.7809 -1.9356 -10.2234 26 1 3.7941 -3.7936 -11.4295 27 1 2.4534 -2.5145 -9.8652 28 1 -0.3633 0.0027 1.0277 29 1 -0.3634 0.8886 -0.5161 30 1 -0.3634 -0.8913 -0.5114 31 1 2.0559 2.1074 -0.0005 32 1 4.8248 -2.8983 -0.5861 33 1 4.3718 -2.2451 1.0066 34 1 4.8629 -3.9488 0.8503 35 1 4.0164 -5.5603 1.4820 36 1 2.4017 -5.1971 2.1370 37 1 2.6727 -6.6981 1.2198 38 1 4.4117 -5.5433 -0.9419 39 1 3.0071 -6.5761 -1.3009 40 1 2.5108 -4.0017 -2.3512 41 1 2.3323 -4.3655 -5.0156 42 1 3.7368 -3.3328 -4.6560 43 1 5.4496 -5.3665 -9.9143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334158242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:44 Heat of formation + Delta-G solvation = -0.795809 kcal Electronic energy + Delta-G solvation = -27378.083746 eV Core-core repulsion = 23360.747750 eV Total energy + Delta-G solvation = -4017.335997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.45057 -40.53398 -39.02856 -36.99347 -35.08777 -34.27851 -32.92611 -32.41868 -31.58968 -29.40164 -28.55781 -27.36154 -26.07111 -25.44530 -25.07062 -22.08678 -21.77857 -20.36041 -19.86685 -18.23851 -18.11086 -17.84252 -17.30522 -16.63964 -16.32775 -15.94345 -15.49673 -15.07367 -14.79430 -14.62053 -14.23308 -14.02441 -13.72904 -13.68327 -13.51594 -13.39515 -13.16042 -13.04188 -12.94115 -12.65716 -12.53000 -12.31354 -12.16474 -11.78162 -11.62585 -11.24865 -11.05306 -11.01352 -10.75349 -10.65185 -10.49461 -9.81973 -9.80769 -9.43045 -9.11475 -9.06125 -8.90242 -8.23005 -6.48836 -6.20626 -3.91037 0.76215 1.28134 2.32373 2.73767 2.77462 3.03770 3.09958 3.23182 3.28526 3.33027 3.50286 3.72158 4.07185 4.21503 4.39207 4.46212 4.63804 4.71946 4.79897 4.87107 4.93160 5.14486 5.15163 5.25027 5.26012 5.28139 5.29107 5.35747 5.45701 5.49599 5.58574 5.64547 5.71867 5.82825 5.88709 5.90367 6.09912 6.15591 6.58537 6.82448 7.50851 7.60708 7.67748 7.72959 8.36448 8.60172 9.24707 10.86857 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.002952 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.486720 B = 9482.667050 C =11193.373210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.151 4.151 3 C -0.064 4.064 4 O 0.122 5.878 5 N -0.322 5.322 6 C -0.030 4.030 7 C 0.598 3.402 8 O -0.520 6.520 9 N -0.595 5.595 10 C 0.075 3.925 11 C 0.124 3.876 12 H 0.112 0.888 13 C -0.158 4.158 14 C 0.112 3.888 15 N -0.736 5.736 16 C 0.533 3.467 17 O -0.517 6.517 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.223 0.777 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.262 11.130 25.402 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.156 4.156 3 C -0.145 4.145 4 O 0.047 5.953 5 N -0.023 5.023 6 C -0.188 4.188 7 C 0.384 3.616 8 O -0.394 6.394 9 N -0.328 5.328 10 C -0.067 4.067 11 C 0.021 3.979 12 H 0.130 0.870 13 C -0.216 4.216 14 C -0.013 4.013 15 N -0.390 5.390 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.169 5.831 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.240 0.760 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.229 0.771 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.360 8.573 25.148 27.104 hybrid contribution -2.042 2.570 -0.839 3.388 sum -7.402 11.143 24.309 27.746 Atomic orbital electron populations 1.20242 0.86512 1.04231 1.03092 1.21370 0.99152 0.90058 1.04986 1.25805 0.82314 1.01378 1.05004 1.84803 1.29548 1.15475 1.65482 1.74384 1.21309 0.91440 1.15176 1.23338 0.89689 0.96853 1.08950 1.16963 0.85190 0.82523 0.76939 1.90787 1.17309 1.81372 1.49942 1.47776 1.08883 1.05939 1.70202 1.22018 0.80707 1.01449 1.02542 1.21512 1.02042 0.78958 0.95371 0.87049 1.22067 1.02516 1.00997 0.96053 1.21664 1.00445 0.95871 0.83302 1.45922 1.52226 1.32739 1.08142 1.20291 0.79103 0.84756 0.83927 1.90699 1.36126 1.26912 1.85413 1.23524 1.05808 1.02962 0.98066 1.85352 1.61359 1.39471 0.96962 1.22872 1.34824 1.15607 0.95088 0.90980 1.24984 0.94645 0.95847 0.98058 1.70014 1.30649 1.28035 1.21616 0.86171 0.78966 0.80099 0.80287 1.20259 1.20716 1.19689 0.90663 0.90852 0.89253 0.76043 0.91540 0.90164 0.90421 0.91662 0.91631 0.90439 0.91105 0.90072 0.77066 0.89282 0.89478 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.06 36.00 0.36 -0.24 16 2 C -0.15 -1.30 6.34 -104.12 -0.66 -1.96 16 3 C -0.06 -0.40 12.24 29.69 0.36 -0.03 16 4 O 0.12 1.05 11.18 17.26 0.19 1.24 16 5 N -0.32 -3.35 8.96 33.29 0.30 -3.05 16 6 C -0.03 -0.32 6.80 -82.53 -0.56 -0.88 16 7 C 0.60 7.01 7.39 -12.11 -0.09 6.92 16 8 O -0.52 -7.03 14.65 5.37 0.08 -6.95 16 9 N -0.59 -6.03 2.24 -174.86 -0.39 -6.42 16 10 C 0.08 0.68 8.46 59.84 0.51 1.19 16 11 C 0.12 1.18 2.79 -67.93 -0.19 0.99 16 12 H 0.11 1.17 6.91 -51.92 -0.36 0.81 16 13 C -0.16 -1.10 9.18 37.16 0.34 -0.76 16 14 C 0.11 1.33 4.97 -4.04 -0.02 1.31 16 15 N -0.74 -10.83 5.39 -60.30 -0.32 -11.16 16 16 C 0.53 10.43 7.85 -10.99 -0.09 10.35 16 17 O -0.52 -11.95 15.86 5.55 0.09 -11.86 16 18 C -0.15 -3.26 6.16 36.00 0.22 -3.04 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.59 9.50 30.94 0.29 -15.30 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 24 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.83 6.80 -51.93 -0.35 0.48 16 31 H 0.22 0.35 8.06 -52.49 -0.42 -0.07 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.71 5.97 -51.93 -0.31 0.40 16 34 H 0.08 0.56 6.44 -51.93 -0.33 0.23 16 35 H 0.06 0.41 6.66 -51.93 -0.35 0.07 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.86 7.84 -51.93 -0.41 0.45 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.40 5.45 7.87 -40.82 -0.32 5.13 16 41 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 42 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -36.59 378.00 -6.26 -42.85 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.78 Total: 1.94 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 0.39 Total: 0.59 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.31 Total: -46.36 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.36 Total: -17.58 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.59 -6.26 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334158242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.050 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds