Wall clock time and date at job start Sat Apr 11 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35317 * 128.04095 * 2 1 4 4 O 1.34011 * 106.66981 * 180.22901 * 3 2 1 5 5 N 1.20903 * 111.84453 * 359.76003 * 4 3 2 6 6 C 1.30978 * 111.44281 * 359.97438 * 5 4 3 7 7 C 1.48333 * 126.94123 * 179.97438 * 6 5 4 8 8 O 1.21492 * 120.00334 * 185.90376 * 7 6 5 9 9 N 1.34779 * 119.99640 * 5.90545 * 7 6 5 10 10 C 1.46494 * 120.00170 * 5.37956 * 9 7 6 11 11 C 1.46504 * 119.99961 * 185.38089 * 9 7 6 12 12 H 1.09008 * 109.46887 * 0.02562 * 11 9 7 13 13 C 1.53001 * 109.47096 * 240.00092 * 11 9 7 14 14 C 1.52997 * 109.47088 * 119.99704 * 11 9 7 15 15 N 1.46497 * 109.47382 * 305.00013 * 14 11 9 16 16 C 1.34778 * 120.00058 * 179.97438 * 15 14 11 17 17 O 1.21286 * 119.99580 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00118 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.47073 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99914 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99937 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00074 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00115 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47184 * 90.00130 * 24 22 20 26 26 H 1.48503 * 109.47323 * 210.00012 * 24 22 20 27 27 H 1.48501 * 109.47439 * 330.00130 * 24 22 20 28 28 H 1.09000 * 109.46973 * 270.14909 * 1 2 3 29 29 H 1.08997 * 109.47279 * 30.14857 * 1 2 3 30 30 H 1.08999 * 109.47328 * 150.15371 * 1 2 3 31 31 H 1.07997 * 126.66135 * 359.96364 * 3 2 1 32 32 H 1.08998 * 109.47331 * 275.36907 * 10 9 7 33 33 H 1.09005 * 109.47190 * 35.37130 * 10 9 7 34 34 H 1.09001 * 109.47178 * 155.36757 * 10 9 7 35 35 H 1.08992 * 109.46866 * 299.99793 * 13 11 9 36 36 H 1.09005 * 109.47075 * 59.99951 * 13 11 9 37 37 H 1.09002 * 109.46921 * 179.97438 * 13 11 9 38 38 H 1.09003 * 109.46949 * 65.00546 * 14 11 9 39 39 H 1.09000 * 109.47054 * 184.99967 * 14 11 9 40 40 H 0.96996 * 119.99782 * 0.02562 * 15 14 11 41 41 H 1.09000 * 109.46919 * 300.00230 * 18 16 15 42 42 H 1.09000 * 109.47111 * 60.00073 * 18 16 15 43 43 H 0.97000 * 120.00542 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5774 -0.0051 5 7 3.5988 -0.6316 -0.0034 6 6 2.3837 -1.1205 0.0035 7 6 1.9992 -2.5531 0.0070 8 8 0.8304 -2.8687 -0.0947 9 7 2.9465 -3.5048 0.1231 10 6 4.3407 -3.1250 0.3638 11 6 2.5819 -4.9191 0.0084 12 1 1.5098 -5.0047 -0.1692 13 6 2.9443 -5.6459 1.3050 14 6 3.3436 -5.5490 -1.1595 15 7 3.0896 -4.7795 -2.3800 16 6 3.6611 -5.1517 -3.5424 17 8 4.3852 -6.1240 -3.5782 18 6 3.4003 -4.3599 -4.7978 19 16 4.3025 -5.1044 -6.1791 20 6 3.8302 -4.0112 -7.4777 21 1 3.1681 -3.1830 -7.2724 22 6 4.3089 -4.2145 -8.7646 23 7 5.1153 -5.2241 -9.0150 24 14 3.8086 -3.0551 -10.1412 25 1 4.7809 -1.9356 -10.2234 26 1 3.7941 -3.7936 -11.4295 27 1 2.4534 -2.5145 -9.8652 28 1 -0.3633 0.0027 1.0277 29 1 -0.3634 0.8886 -0.5161 30 1 -0.3634 -0.8913 -0.5114 31 1 2.0559 2.1074 -0.0005 32 1 4.8248 -2.8983 -0.5861 33 1 4.3718 -2.2451 1.0066 34 1 4.8629 -3.9488 0.8503 35 1 4.0164 -5.5603 1.4820 36 1 2.4017 -5.1971 2.1370 37 1 2.6727 -6.6981 1.2198 38 1 4.4117 -5.5433 -0.9419 39 1 3.0071 -6.5761 -1.3009 40 1 2.5108 -4.0017 -2.3512 41 1 2.3323 -4.3655 -5.0156 42 1 3.7368 -3.3328 -4.6560 43 1 5.4496 -5.3665 -9.9143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334158242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:44 Heat of formation + Delta-G solvation = -26.434156 kcal Electronic energy + Delta-G solvation = -27379.195508 eV Core-core repulsion = 23360.747750 eV Total energy + Delta-G solvation = -4018.447759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.12802 -41.47376 -40.47070 -37.96203 -35.79220 -35.41831 -34.62013 -33.77210 -32.45130 -30.92846 -29.13764 -28.12991 -27.77832 -26.90752 -25.94434 -22.71503 -22.55764 -21.84420 -20.71668 -19.83590 -18.94009 -18.80846 -18.13282 -17.92883 -17.64273 -17.03011 -16.91039 -16.55222 -16.42095 -15.90668 -15.29685 -15.06549 -14.86327 -14.54944 -14.48460 -14.31712 -14.16796 -14.03786 -14.01422 -13.70474 -13.53347 -13.20759 -13.16848 -12.99498 -12.91283 -12.86017 -12.62318 -12.32852 -12.01665 -11.76616 -11.39344 -11.33139 -11.17318 -11.07812 -10.39092 -10.34855 -10.24828 -9.96058 -8.71196 -8.37872 -6.16741 0.03764 0.70352 1.21396 1.40457 1.42316 1.49746 1.53321 1.56968 1.91335 2.17875 2.24150 2.27095 2.78420 2.96157 3.26010 3.40682 3.55799 3.78815 3.86731 3.95768 4.06903 4.08964 4.12407 4.17808 4.37874 4.39627 4.51154 4.53476 4.58680 4.73458 4.77353 4.80094 4.83265 4.91915 4.95001 5.18230 5.25547 5.31898 5.37969 5.38322 5.99402 6.16272 6.28475 6.71110 7.03113 7.04571 7.08699 8.71475 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.002952 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.486720 B = 9482.667050 C =11193.373210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.175 4.175 3 C -0.037 4.037 4 O 0.122 5.878 5 N -0.340 5.340 6 C -0.056 4.056 7 C 0.592 3.408 8 O -0.545 6.545 9 N -0.593 5.593 10 C 0.079 3.921 11 C 0.131 3.869 12 H 0.103 0.897 13 C -0.151 4.151 14 C 0.111 3.889 15 N -0.715 5.715 16 C 0.537 3.463 17 O -0.557 6.557 18 C -0.131 4.131 19 S -0.139 6.139 20 C -0.551 4.551 21 H 0.079 0.921 22 C 0.016 3.984 23 N -0.910 5.910 24 Si 0.999 3.001 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.260 1.260 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.271 0.729 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.403 0.597 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.184 13.513 26.343 30.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.180 4.180 3 C -0.117 4.117 4 O 0.047 5.953 5 N -0.041 5.041 6 C -0.213 4.213 7 C 0.379 3.621 8 O -0.422 6.422 9 N -0.325 5.325 10 C -0.063 4.063 11 C 0.028 3.972 12 H 0.121 0.879 13 C -0.209 4.209 14 C -0.013 4.013 15 N -0.367 5.367 16 C 0.323 3.677 17 O -0.435 6.435 18 C -0.283 4.283 19 S 0.088 5.912 20 C -0.699 4.699 21 H 0.097 0.903 22 C -0.189 4.189 23 N -0.546 5.546 24 Si 0.820 3.180 25 H -0.191 1.191 26 H -0.200 1.200 27 H -0.184 1.184 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.287 0.713 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.238 0.762 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.287 10.958 26.141 29.034 hybrid contribution -1.779 1.887 -1.003 2.781 sum -8.066 12.846 25.138 29.359 Atomic orbital electron populations 1.20219 0.85796 1.04071 1.03511 1.21679 0.99925 0.90108 1.06280 1.26631 0.80591 1.02720 1.01765 1.84769 1.30820 1.14868 1.64885 1.74387 1.21344 0.92270 1.16053 1.23449 0.90624 0.96897 1.10351 1.17219 0.85051 0.83274 0.76545 1.90766 1.18266 1.81916 1.51265 1.47866 1.09130 1.05969 1.69576 1.22032 0.80033 1.02430 1.01841 1.21483 1.01082 0.78907 0.95682 0.87937 1.22038 1.03232 1.01342 0.94303 1.21894 1.01064 0.95863 0.82523 1.45739 1.50671 1.32606 1.07722 1.19961 0.79126 0.84081 0.84577 1.90688 1.38200 1.28566 1.86001 1.23361 1.05421 1.03168 0.96313 1.85468 1.63582 1.41612 1.00517 1.23195 1.35216 1.15814 0.95683 0.90272 1.26120 0.94256 0.97607 1.00940 1.70167 1.31851 1.30048 1.22509 0.84953 0.79129 0.77605 0.76286 1.19136 1.19993 1.18387 0.90001 0.88383 0.91931 0.71312 0.93224 0.89925 0.88423 0.90626 0.91290 0.89145 0.90840 0.89766 0.76246 0.87855 0.88098 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.06 71.24 0.72 -0.32 16 2 C -0.17 -2.74 6.34 -19.54 -0.12 -2.86 16 3 C -0.04 -0.35 12.24 67.15 0.82 0.47 16 4 O 0.12 1.87 11.18 71.93 0.80 2.68 16 5 N -0.34 -6.77 8.96 -49.52 -0.44 -7.22 16 6 C -0.06 -1.17 6.80 42.96 0.29 -0.88 16 7 C 0.59 13.81 7.39 86.93 0.64 14.46 16 8 O -0.55 -14.93 14.65 -3.69 -0.05 -14.99 16 9 N -0.59 -11.64 2.24 -825.45 -1.85 -13.49 16 10 C 0.08 1.36 8.46 127.77 1.08 2.44 16 11 C 0.13 2.37 2.79 44.99 0.13 2.49 16 12 H 0.10 2.10 6.91 -2.38 -0.02 2.08 16 13 C -0.15 -1.83 9.18 71.98 0.66 -1.16 16 14 C 0.11 2.53 4.97 86.38 0.43 2.96 16 15 N -0.71 -20.69 5.39 -463.06 -2.50 -23.19 16 16 C 0.54 21.07 7.85 87.66 0.69 21.76 16 17 O -0.56 -26.19 15.86 -3.05 -0.05 -26.24 16 18 C -0.13 -5.62 6.16 71.23 0.44 -5.18 16 19 S -0.14 -7.92 20.57 -56.49 -1.16 -9.09 16 20 C -0.55 -32.34 9.50 67.95 0.65 -31.69 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.02 0.91 5.49 84.86 0.47 1.38 16 23 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 24 Si 1.00 44.21 29.55 68.60 2.03 46.24 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 27 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 1.17 6.80 -2.39 -0.02 1.15 16 31 H 0.27 -0.44 8.06 -2.91 -0.02 -0.47 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.41 5.97 -2.38 -0.01 1.40 16 34 H 0.10 1.26 6.44 -2.39 -0.02 1.24 16 35 H 0.07 0.78 6.66 -2.39 -0.02 0.76 16 36 H 0.07 0.83 8.14 -2.38 -0.02 0.82 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 1.70 7.84 -2.39 -0.02 1.68 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.40 10.85 7.87 -92.71 -0.73 10.12 16 41 H 0.10 4.10 8.14 -2.39 -0.02 4.08 16 42 H 0.10 4.01 8.14 -2.40 -0.02 4.00 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -82.11 378.00 4.27 -77.84 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.32 Total: 19.68 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 6.88 Total: 3.87 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -4.50 Total: -100.00 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: 0.70 Total: -38.55 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.09 kcal Total: -82.11 4.27 -77.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334158242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.408 kcal (2) G-P(sol) polarization free energy of solvation -82.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds