Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41258 * 128.07719 * 2 1 4 4 N 1.30135 * 106.58965 * 180.23989 * 3 2 1 5 5 O 1.20879 * 111.98282 * 359.78071 * 4 3 2 6 6 C 1.34642 * 111.46835 * 0.02562 * 5 4 3 7 7 C 1.47514 * 126.94498 * 179.97438 * 6 5 4 8 8 O 1.21587 * 119.99704 * 186.47987 * 7 6 5 9 9 N 1.34770 * 120.00048 * 6.47854 * 7 6 5 10 10 C 1.46497 * 120.00106 * 5.35523 * 9 7 6 11 11 C 1.46499 * 120.00209 * 185.35811 * 9 7 6 12 12 H 1.08999 * 109.46956 * 359.97438 * 11 9 7 13 13 C 1.53005 * 109.47208 * 240.00047 * 11 9 7 14 14 C 1.52995 * 109.47314 * 119.99880 * 11 9 7 15 15 N 1.46497 * 109.47485 * 304.99945 * 14 11 9 16 16 C 1.34778 * 120.00474 * 179.97438 * 15 14 11 17 17 O 1.21282 * 119.99602 * 0.02562 * 16 15 14 18 18 C 1.50694 * 119.99895 * 180.02562 * 16 15 14 19 19 S 1.81001 * 109.46924 * 180.02562 * 18 16 15 20 20 C 1.76204 * 100.00277 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99207 * 0.02562 * 20 19 18 22 22 C 1.38792 * 120.00326 * 179.97438 * 20 19 18 23 23 N 1.31639 * 119.99768 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00365 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47284 * 89.99766 * 24 22 20 26 26 H 1.48495 * 109.47562 * 209.99682 * 24 22 20 27 27 H 1.48501 * 109.46995 * 330.00243 * 24 22 20 28 28 H 1.09003 * 109.46911 * 270.12483 * 1 2 3 29 29 H 1.08997 * 109.47095 * 30.12291 * 1 2 3 30 30 H 1.08997 * 109.47306 * 150.12318 * 1 2 3 31 31 H 1.07997 * 126.70828 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47436 * 275.33920 * 10 9 7 33 33 H 1.09006 * 109.47255 * 35.34006 * 10 9 7 34 34 H 1.09003 * 109.47407 * 155.33792 * 10 9 7 35 35 H 1.08999 * 109.47057 * 299.99810 * 13 11 9 36 36 H 1.09002 * 109.46795 * 59.99874 * 13 11 9 37 37 H 1.09000 * 109.47330 * 179.97438 * 13 11 9 38 38 H 1.09001 * 109.47228 * 65.00688 * 14 11 9 39 39 H 1.09007 * 109.47522 * 184.99936 * 14 11 9 40 40 H 0.96998 * 119.99609 * 0.02562 * 15 14 11 41 41 H 1.08997 * 109.47258 * 299.99470 * 18 16 15 42 42 H 1.08997 * 109.47576 * 60.00107 * 18 16 15 43 43 H 0.96997 * 119.99264 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5891 0.6353 -0.0052 5 8 3.5995 -0.5735 -0.0041 6 6 2.3508 -1.0771 0.0017 7 6 1.9695 -2.5021 0.0042 8 8 0.8011 -2.8189 -0.1093 9 7 2.9162 -3.4527 0.1322 10 6 4.3076 -3.0713 0.3864 11 6 2.5538 -4.8675 0.0172 12 1 1.4836 -4.9544 -0.1702 13 6 2.9034 -5.5910 1.3193 14 6 3.3278 -5.4997 -1.1412 15 7 3.0859 -4.7334 -2.3661 16 6 3.6695 -5.1080 -3.5218 17 8 4.3946 -6.0799 -3.5477 18 6 3.4210 -4.3193 -4.7816 19 16 4.3366 -5.0673 -6.1521 20 6 3.8783 -3.9766 -7.4578 21 1 3.2148 -3.1475 -7.2609 22 6 4.3707 -4.1823 -8.7391 23 7 5.1806 -5.1920 -8.9786 24 14 3.8842 -3.0264 -10.1235 25 1 4.8563 -1.9062 -10.1978 26 1 3.8839 -3.7676 -11.4102 27 1 2.5257 -2.4862 -9.8629 28 1 -0.3633 0.0022 1.0277 29 1 -0.3633 0.8889 -0.5157 30 1 -0.3634 -0.8911 -0.5119 31 1 2.0947 2.1541 -0.0004 32 1 4.8014 -2.8471 -0.5591 33 1 4.3315 -2.1896 1.0268 34 1 4.8253 -3.8935 0.8806 35 1 3.9736 -5.5042 1.5071 36 1 2.3519 -5.1406 2.1446 37 1 2.6334 -6.6436 1.2339 38 1 4.3936 -5.4928 -0.9127 39 1 2.9936 -6.5274 -1.2836 40 1 2.5063 -3.9560 -2.3452 41 1 2.3554 -4.3264 -5.0104 42 1 3.7552 -3.2917 -4.6389 43 1 5.5250 -5.3354 -9.8740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334158964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = -4.578509 kcal Electronic energy + Delta-G solvation = -27442.046628 eV Core-core repulsion = 23424.546601 eV Total energy + Delta-G solvation = -4017.500027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.39820 -40.59878 -39.05776 -37.12545 -35.11384 -34.27956 -32.93825 -32.41944 -31.70705 -29.42448 -28.71853 -27.43269 -26.04162 -25.39096 -24.55876 -23.08236 -21.38720 -20.39800 -20.08013 -18.43930 -18.16323 -17.85370 -17.10582 -16.47451 -16.30077 -15.86929 -15.53309 -15.14687 -14.79615 -14.69764 -14.28564 -14.03509 -13.79239 -13.64817 -13.53568 -13.45131 -13.19319 -13.02541 -12.96182 -12.70766 -12.57450 -12.50004 -12.20685 -11.78401 -11.62821 -11.30178 -11.05471 -11.01654 -10.76005 -10.75088 -10.59355 -9.87403 -9.81277 -9.44596 -9.17843 -9.06385 -8.92194 -8.23447 -6.49157 -6.20995 -3.91391 0.40097 1.69624 2.09502 2.51218 2.70246 3.03062 3.08807 3.23110 3.28524 3.32879 3.70101 3.78697 3.99681 4.21253 4.27779 4.40110 4.60302 4.66740 4.70396 4.83646 4.87601 5.13913 5.14315 5.16704 5.22997 5.24091 5.30825 5.32776 5.45440 5.47963 5.50469 5.61442 5.69993 5.79726 5.82930 5.89443 6.01175 6.15100 6.56433 6.71324 7.41584 7.60502 7.66151 7.71741 8.36200 8.58897 9.24511 10.86466 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.002956 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.017959 B = 9469.899196 C =11147.548715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.115 4.115 3 C -0.016 4.016 4 N -0.342 5.342 5 O 0.122 5.878 6 C -0.096 4.096 7 C 0.606 3.394 8 O -0.509 6.509 9 N -0.596 5.596 10 C 0.068 3.932 11 C 0.125 3.875 12 H 0.113 0.887 13 C -0.159 4.159 14 C 0.112 3.888 15 N -0.736 5.736 16 C 0.533 3.467 17 O -0.517 6.517 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.199 0.801 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 8.475 25.353 27.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.193 4.193 4 N -0.041 5.041 5 O 0.048 5.952 6 C -0.162 4.162 7 C 0.391 3.609 8 O -0.385 6.385 9 N -0.329 5.329 10 C -0.074 4.074 11 C 0.022 3.978 12 H 0.131 0.869 13 C -0.217 4.217 14 C -0.013 4.013 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.215 0.785 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.888 7.119 25.109 26.755 hybrid contribution -1.981 2.370 -0.860 3.206 sum -7.868 9.489 24.249 27.202 Atomic orbital electron populations 1.20369 0.86253 1.04583 1.03373 1.21674 0.99081 0.90305 1.00948 1.25023 0.87673 1.02184 1.04435 1.73769 1.23157 0.91557 1.15584 1.85120 1.27953 1.15305 1.66853 1.23870 0.84820 0.96015 1.11453 1.16603 0.85303 0.81674 0.77275 1.90854 1.17119 1.80350 1.50197 1.47804 1.08994 1.06125 1.70006 1.22031 0.80958 1.01765 1.02645 1.21533 1.02090 0.78672 0.95503 0.86939 1.22077 1.02621 1.01066 0.95946 1.21674 1.00492 0.95958 0.83223 1.45925 1.51994 1.32856 1.08336 1.20285 0.79079 0.84716 0.83967 1.90701 1.36171 1.26880 1.85336 1.23527 1.05890 1.03029 0.97979 1.85355 1.61013 1.39413 0.97388 1.22870 1.34643 1.15617 0.95248 0.90973 1.24983 0.94629 0.95832 0.98088 1.70022 1.30279 1.28013 1.21995 0.86173 0.78952 0.80088 0.80330 1.20271 1.20721 1.19690 0.90216 0.90536 0.88889 0.78455 0.91152 0.90495 0.89679 0.91580 0.91553 0.90409 0.90986 0.90027 0.77041 0.89266 0.89409 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.02 36.00 0.36 -0.27 16 2 C -0.12 -1.03 6.36 -103.99 -0.66 -1.69 16 3 C -0.02 -0.13 12.14 -17.12 -0.21 -0.34 16 4 N -0.34 -3.62 12.04 30.46 0.37 -3.26 16 5 O 0.12 1.24 8.27 15.55 0.13 1.36 16 6 C -0.10 -0.95 6.82 -36.31 -0.25 -1.20 16 7 C 0.61 6.16 7.37 -12.48 -0.09 6.07 16 8 O -0.51 -6.13 14.43 5.29 0.08 -6.06 16 9 N -0.60 -5.07 2.24 -175.18 -0.39 -5.46 16 10 C 0.07 0.49 8.49 59.85 0.51 0.99 16 11 C 0.12 1.01 2.79 -67.93 -0.19 0.82 16 12 H 0.11 1.03 6.91 -51.93 -0.36 0.67 16 13 C -0.16 -0.92 9.18 37.16 0.34 -0.57 16 14 C 0.11 1.19 4.97 -4.05 -0.02 1.17 16 15 N -0.74 -10.02 5.39 -60.30 -0.32 -10.34 16 16 C 0.53 9.99 7.85 -10.99 -0.09 9.91 16 17 O -0.52 -11.56 15.86 5.56 0.09 -11.47 16 18 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 24 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.81 6.63 -51.93 -0.34 0.46 16 31 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.51 6.02 -51.93 -0.31 0.20 16 34 H 0.08 0.46 6.44 -51.93 -0.33 0.12 16 35 H 0.07 0.33 6.67 -51.93 -0.35 -0.01 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 4.93 7.87 -40.82 -0.32 4.61 16 41 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 377.72 15.07 5.69 5.69 Total: -1.00 -35.96 377.72 -6.52 -42.48 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.77 Total: 1.02 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 0.12 Total: -1.18 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.38 Total: -44.64 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: 0.29 Total: -16.16 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.96 -6.52 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334158964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.899 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds