Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 110.53800 * 2 1 4 4 C 1.53003 * 109.47147 * 49.44607 * 3 2 1 5 5 H 1.08995 * 109.87452 * 310.25100 * 4 3 2 6 6 C 1.54324 * 109.87846 * 71.42580 * 4 3 2 7 7 C 1.55153 * 102.94255 * 141.61127 * 6 4 3 8 8 C 1.54913 * 101.58294 * 324.49839 * 7 6 4 9 9 N 1.47022 * 109.88217 * 189.23098 * 4 3 2 10 10 C 1.34771 * 125.64705 * 61.68487 * 9 4 3 11 11 O 1.21284 * 120.00052 * 355.17602 * 10 9 4 12 12 C 1.50696 * 120.00293 * 175.17880 * 10 9 4 13 13 S 1.80992 * 109.47600 * 180.02562 * 12 10 9 14 14 C 1.76201 * 100.00420 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99797 * 359.97438 * 14 13 12 16 16 C 1.38799 * 120.00230 * 179.97438 * 14 13 12 17 17 N 1.31623 * 119.99970 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99885 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47679 * 89.99904 * 18 16 14 20 20 H 1.48505 * 109.47137 * 209.99963 * 18 16 14 21 21 H 1.48500 * 109.47248 * 329.99275 * 18 16 14 22 22 N 1.47317 * 110.59705 * 237.17054 * 2 1 3 23 23 C 1.34526 * 106.62180 * 241.32128 * 22 2 1 24 24 O 1.21538 * 123.77344 * 180.02562 * 23 22 2 25 25 N 1.33798 * 112.45599 * 0.02562 * 23 22 2 26 26 C 1.34767 * 111.64273 * 359.97438 * 25 23 22 27 27 O 1.21238 * 127.15323 * 179.97438 * 26 25 23 28 28 H 1.08996 * 109.47158 * 185.54617 * 1 2 3 29 29 H 1.09000 * 109.47106 * 305.54567 * 1 2 3 30 30 H 1.09003 * 109.47272 * 65.54290 * 1 2 3 31 31 H 1.08999 * 109.47233 * 169.44867 * 3 2 1 32 32 H 1.08999 * 109.47244 * 289.44862 * 3 2 1 33 33 H 1.09005 * 110.72272 * 259.97209 * 6 4 3 34 34 H 1.09000 * 110.72496 * 23.24638 * 6 4 3 35 35 H 1.09003 * 111.00716 * 206.42065 * 7 6 4 36 36 H 1.09005 * 111.00449 * 82.56999 * 7 6 4 37 37 H 1.08998 * 110.36507 * 278.17275 * 8 7 6 38 38 H 1.08997 * 110.37095 * 155.84528 * 8 7 6 39 39 H 1.09011 * 109.46713 * 299.99884 * 12 10 9 40 40 H 1.09005 * 109.47218 * 59.99223 * 12 10 9 41 41 H 0.97003 * 120.00483 * 180.02562 * 17 16 14 42 42 H 0.97001 * 126.68946 * 61.35955 * 22 2 1 43 43 H 0.96994 * 124.17588 * 179.73676 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 6 1.3674 2.2393 1.0960 5 1 0.2879 2.1088 1.0206 6 6 1.8596 1.7763 2.4834 7 6 1.9456 3.1035 3.2824 8 6 2.4094 4.0963 2.1874 9 7 1.7094 3.6632 0.9644 10 6 1.4287 4.4434 -0.0981 11 8 0.9237 3.9598 -1.0891 12 6 1.7422 5.9167 -0.0548 13 16 1.2516 6.6843 -1.6188 14 6 1.7186 8.3532 -1.3004 15 1 2.1625 8.6182 -0.3522 16 6 1.5159 9.3273 -2.2683 17 7 1.8643 10.5740 -2.0302 18 14 0.7488 8.8687 -3.9085 19 1 -0.7274 9.0029 -3.8195 20 1 1.2651 9.7738 -4.9667 21 1 1.0990 7.4651 -4.2437 22 7 2.0482 -0.7476 -1.1588 23 6 2.7627 -1.7752 -0.6655 24 8 3.3326 -2.5957 -1.3576 25 7 2.7757 -1.7930 0.6723 26 6 2.0662 -0.7708 1.1900 27 8 1.8924 -0.5203 2.3634 28 1 -0.3633 -1.0228 0.0993 29 1 -0.3633 0.5974 0.8362 30 1 -0.3634 0.4255 -0.9355 31 1 3.1403 1.4185 0.1882 32 1 1.8738 1.8930 -0.9690 33 1 1.1405 1.0967 2.9408 34 1 2.8407 1.3074 2.4079 35 1 2.6830 3.0312 4.0819 36 1 0.9696 3.3856 3.6775 37 1 3.4887 4.0320 2.0496 38 1 2.1195 5.1136 2.4502 39 1 1.1938 6.3809 0.7651 40 1 2.8123 6.0562 0.0990 41 1 1.7224 11.2549 -2.7064 42 1 1.9031 -0.5392 -2.0949 43 1 3.2359 -2.4612 1.2039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341815853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = -91.607319 kcal Electronic energy + Delta-G solvation = -28118.716655 eV Core-core repulsion = 24097.442776 eV Total energy + Delta-G solvation = -4021.273879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.66689 -41.24907 -39.88146 -38.46863 -37.67480 -35.78455 -34.67412 -33.36564 -32.61841 -30.78734 -29.76269 -27.85268 -27.43473 -25.48875 -24.06542 -23.84963 -22.40203 -21.42183 -20.27426 -19.52080 -19.28428 -18.28210 -17.79017 -17.68973 -17.29754 -17.09117 -16.80719 -16.71080 -16.42851 -15.97492 -15.62377 -15.41470 -15.28861 -14.89409 -14.86780 -14.59259 -14.05279 -13.76475 -13.61070 -13.45660 -13.34744 -13.27011 -13.01520 -12.82368 -12.70849 -12.56397 -12.29834 -12.01832 -11.86569 -11.71544 -11.70622 -11.27565 -11.16898 -10.91725 -10.84820 -10.57819 -10.53098 -9.68893 -8.99164 -8.51444 -6.22161 0.48600 0.97393 1.31892 1.37809 1.46134 1.53801 1.54400 1.90205 2.01124 2.11103 2.25064 2.68357 2.84569 2.86967 3.40594 3.46929 3.56012 3.71011 3.91529 3.98793 4.14168 4.20386 4.23118 4.29017 4.41771 4.45703 4.61285 4.67768 4.71426 4.82700 4.91500 4.97659 5.03271 5.11984 5.16152 5.25495 5.39196 5.47625 5.70697 5.73661 5.84481 6.11540 6.36852 6.38711 6.93621 7.06640 7.08649 8.61097 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.002817 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.180625 B = 9935.670564 C =11005.523497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 C -0.121 4.121 4 C 0.132 3.868 5 H 0.090 0.910 6 C -0.115 4.115 7 C -0.128 4.128 8 C 0.086 3.914 9 N -0.610 5.610 10 C 0.550 3.450 11 O -0.550 6.550 12 C -0.106 4.106 13 S -0.168 6.168 14 C -0.529 4.529 15 H 0.060 0.940 16 C 0.045 3.955 17 N -0.918 5.918 18 Si 0.915 3.085 19 H -0.261 1.261 20 H -0.261 1.261 21 H -0.235 1.235 22 N -0.707 5.707 23 C 0.706 3.294 24 O -0.584 6.584 25 N -0.669 5.669 26 C 0.534 3.466 27 O -0.455 6.455 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.277 0.723 42 H 0.447 0.553 43 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 -24.985 11.956 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 C -0.161 4.161 4 C 0.028 3.972 5 H 0.108 0.892 6 C -0.153 4.153 7 C -0.166 4.166 8 C -0.036 4.036 9 N -0.345 5.345 10 C 0.337 3.663 11 O -0.429 6.429 12 C -0.257 4.257 13 S 0.058 5.942 14 C -0.677 4.677 15 H 0.079 0.921 16 C -0.160 4.160 17 N -0.556 5.556 18 Si 0.737 3.263 19 H -0.186 1.186 20 H -0.185 1.185 21 H -0.159 1.159 22 N -0.371 5.371 23 C 0.405 3.595 24 O -0.461 6.461 25 N -0.341 5.341 26 C 0.320 3.680 27 O -0.323 6.323 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.086 0.914 42 H 0.293 0.707 43 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -1.294 -25.680 10.646 27.830 hybrid contribution 0.808 1.052 0.097 1.329 sum -0.487 -24.629 10.743 26.874 Atomic orbital electron populations 1.22151 0.88810 1.04456 1.05477 1.21354 0.98227 0.92554 0.83876 1.22066 1.00542 0.91420 1.02071 1.21964 1.00172 0.79214 0.95826 0.89243 1.23191 1.03277 0.96929 0.91877 1.22871 1.03263 0.93599 0.96845 1.22665 0.97207 1.00226 0.83499 1.48507 1.58149 1.10471 1.17348 1.19540 0.77641 0.87115 0.81961 1.90655 1.44687 1.75169 1.32342 1.23240 1.05893 0.94792 1.01775 1.84600 1.83109 1.05523 1.20922 1.22463 1.47209 0.92890 1.05119 0.92142 1.25578 0.94610 0.93966 1.01892 1.70016 1.47050 1.01827 1.36726 0.85859 0.79877 0.81006 0.79585 1.18608 1.18499 1.15856 1.45738 1.53668 1.27818 1.09898 1.15933 0.79309 0.82096 0.82124 1.91045 1.50225 1.43169 1.61650 1.44230 1.51284 1.30619 1.07951 1.20681 0.76975 0.80463 0.89925 1.90872 1.57171 1.67400 1.16906 0.90201 0.88804 0.89774 0.90867 0.89743 0.86849 0.90757 0.87872 0.89992 0.90366 0.89982 0.87420 0.87631 0.91373 0.70678 0.71457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.54 71.98 0.61 -1.09 16 2 C 0.13 1.77 1.11 2.98 0.00 1.77 16 3 C -0.12 -2.16 4.45 30.59 0.14 -2.02 16 4 C 0.13 2.36 2.58 45.34 0.12 2.48 16 5 H 0.09 1.60 5.69 -2.39 -0.01 1.59 16 6 C -0.12 -1.54 4.16 31.78 0.13 -1.41 16 7 C -0.13 -1.54 7.08 31.99 0.23 -1.31 16 8 C 0.09 1.47 6.74 86.86 0.59 2.05 16 9 N -0.61 -14.15 3.06 -788.07 -2.41 -16.57 16 10 C 0.55 17.99 7.67 87.66 0.67 18.66 16 11 O -0.55 -21.23 14.64 -3.04 -0.04 -21.28 16 12 C -0.11 -3.93 5.09 71.23 0.36 -3.57 16 13 S -0.17 -8.27 18.55 -56.49 -1.05 -9.32 16 14 C -0.53 -30.41 10.04 67.95 0.68 -29.72 16 15 H 0.06 3.68 8.03 -2.91 -0.02 3.66 16 16 C 0.04 2.60 5.50 84.86 0.47 3.07 16 17 N -0.92 -55.53 13.97 21.65 0.30 -55.23 16 18 Si 0.91 44.27 27.74 68.60 1.90 46.17 16 19 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.23 -11.25 6.74 99.48 0.67 -10.58 16 22 N -0.71 -10.07 5.90 -439.81 -2.60 -12.67 16 23 C 0.71 12.36 8.99 179.44 1.61 13.97 16 24 O -0.58 -14.80 18.04 -3.84 -0.07 -14.87 16 25 N -0.67 -8.31 5.70 -441.11 -2.52 -10.82 16 26 C 0.53 6.92 6.87 87.94 0.60 7.52 16 27 O -0.45 -6.48 12.57 -2.90 -0.04 -6.52 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.09 1.00 5.86 -2.39 -0.01 0.99 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.31 7.86 -2.39 -0.02 1.29 16 32 H 0.08 1.98 6.47 -2.39 -0.02 1.96 16 33 H 0.11 1.44 6.21 -2.38 -0.01 1.43 16 34 H 0.07 1.03 6.33 -2.39 -0.02 1.01 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.41 7.47 -2.39 -0.02 1.39 16 39 H 0.11 3.73 7.95 -2.39 -0.02 3.71 16 40 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 41 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.45 5.57 8.96 -92.71 -0.83 4.74 16 43 H 0.44 3.69 8.96 -92.71 -0.83 2.86 16 Total: -1.00 -75.42 356.92 -0.92 -76.34 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -0.62 Total: 14.36 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.22 Total: 10.40 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -7.23 Total: -95.29 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.15 Total: -42.67 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.90 Total: 46.17 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.05 Total: -9.32 kcal Total: -75.42 -0.92 -76.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341815853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.271 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds