Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 110.53571 * 2 1 4 4 C 1.53001 * 109.47218 * 56.00031 * 3 2 1 5 5 H 1.09010 * 109.86948 * 307.52225 * 4 3 2 6 6 C 1.54327 * 110.01236 * 68.61753 * 4 3 2 7 7 C 1.55157 * 102.93806 * 141.68348 * 6 4 3 8 8 C 1.55123 * 101.48732 * 324.33467 * 7 6 4 9 9 N 1.47018 * 109.88307 * 186.50704 * 4 3 2 10 10 C 1.34773 * 125.64647 * 61.44837 * 9 4 3 11 11 O 1.21287 * 120.00528 * 355.06590 * 10 9 4 12 12 C 1.50706 * 120.00117 * 175.06791 * 10 9 4 13 13 S 1.80996 * 109.47318 * 180.02562 * 12 10 9 14 14 C 1.76205 * 99.99816 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00251 * 359.97438 * 14 13 12 16 16 C 1.38800 * 119.99798 * 180.02562 * 14 13 12 17 17 N 1.31632 * 119.99970 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00207 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46816 * 90.00307 * 18 16 14 20 20 H 1.48497 * 109.47218 * 210.00283 * 18 16 14 21 21 H 1.48502 * 109.46983 * 330.00681 * 18 16 14 22 22 N 1.47317 * 110.59750 * 122.82917 * 2 1 3 23 23 C 1.34864 * 106.43692 * 118.72999 * 22 2 1 24 24 O 1.21545 * 123.72472 * 179.97438 * 23 22 2 25 25 N 1.33785 * 112.50583 * 359.86208 * 23 22 2 26 26 C 1.34773 * 111.64450 * 0.09203 * 25 23 22 27 27 O 1.21230 * 127.15868 * 180.02562 * 26 25 23 28 28 H 1.09003 * 109.47030 * 54.80816 * 1 2 3 29 29 H 1.09000 * 109.47204 * 174.80024 * 1 2 3 30 30 H 1.08997 * 109.47303 * 294.80982 * 1 2 3 31 31 H 1.08997 * 109.46803 * 295.99537 * 3 2 1 32 32 H 1.09005 * 109.47051 * 175.99531 * 3 2 1 33 33 H 1.08992 * 110.72098 * 260.04946 * 6 4 3 34 34 H 1.08998 * 110.71858 * 23.14814 * 6 4 3 35 35 H 1.08996 * 111.00447 * 82.57456 * 7 6 4 36 36 H 1.08996 * 111.00060 * 206.38649 * 7 6 4 37 37 H 1.09002 * 110.49806 * 278.45150 * 8 7 6 38 38 H 1.09002 * 110.34698 * 156.06138 * 8 7 6 39 39 H 1.09003 * 109.46888 * 300.00198 * 12 10 9 40 40 H 1.08999 * 109.47172 * 59.99492 * 12 10 9 41 41 H 0.96993 * 120.00248 * 179.97438 * 17 16 14 42 42 H 0.97001 * 126.68933 * 298.65003 * 22 2 1 43 43 H 0.96995 * 124.18335 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.4902 2.1934 1.1959 5 1 0.4039 2.1036 1.2034 6 6 2.0724 1.6310 2.5099 7 6 2.2712 2.9039 3.3745 8 6 2.6890 3.9438 2.3020 9 7 1.8743 3.6104 1.1195 10 6 1.5415 4.4621 0.1294 11 8 0.9451 4.0557 -0.8454 12 6 1.9104 5.9196 0.2334 13 16 1.3297 6.7956 -1.2402 14 6 1.8797 8.4266 -0.8631 15 1 2.4041 8.6195 0.0611 16 6 1.6381 9.4637 -1.7534 17 7 2.0494 10.6820 -1.4720 18 14 0.7305 9.1302 -3.3517 19 1 -0.7286 9.3050 -3.1380 20 1 1.1958 10.0813 -4.3929 21 1 1.0028 7.7392 -3.7946 22 7 2.0482 -0.7476 1.1588 23 6 2.7645 -1.7758 0.6602 24 8 3.3357 -2.5975 1.3500 25 7 2.7744 -1.7920 -0.6775 26 6 2.0633 -0.7693 -1.1923 27 8 1.8866 -0.5174 -2.3649 28 1 -0.3633 0.5923 -0.8399 29 1 -0.3633 -1.0234 -0.0931 30 1 -0.3634 0.4312 0.9328 31 1 1.7723 1.9310 -0.9237 32 1 3.1542 1.4134 0.0718 33 1 1.3664 0.9492 2.9838 34 1 3.0245 1.1328 2.3277 35 1 1.3409 3.1936 3.8630 36 1 3.0656 2.7587 4.1066 37 1 3.7500 3.8485 2.0709 38 1 2.4640 4.9536 2.6453 39 1 1.4436 6.3503 1.1192 40 1 2.9935 6.0157 0.3105 41 1 1.8809 11.4067 -2.0943 42 1 1.9030 -0.5393 2.0949 43 1 3.2369 -2.4569 -1.2111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341815854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -102.941791 kcal Electronic energy + Delta-G solvation = -28004.919394 eV Core-core repulsion = 23983.154015 eV Total energy + Delta-G solvation = -4021.765379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.65724 -41.22564 -39.82212 -38.79066 -37.54163 -35.81005 -34.67944 -33.07095 -32.78636 -30.84310 -29.96406 -27.85800 -27.57397 -25.53416 -24.03730 -23.69933 -22.34559 -21.43567 -20.46034 -19.53021 -19.23490 -18.25075 -17.91103 -17.69431 -17.21902 -17.08884 -16.91260 -16.76619 -16.37150 -16.01003 -15.53330 -15.46037 -15.26215 -14.89961 -14.68884 -14.40448 -14.13902 -14.07872 -13.64401 -13.50552 -13.37149 -13.31847 -13.04090 -12.97231 -12.72080 -12.53040 -12.14597 -12.06619 -11.87804 -11.78508 -11.66415 -11.55020 -11.32275 -11.17616 -10.92756 -10.54918 -10.52834 -9.69623 -9.00276 -8.52280 -6.22919 0.43545 0.96938 1.30730 1.37616 1.45535 1.52965 1.53594 1.89094 1.96876 2.10044 2.24393 2.68090 2.81953 2.86141 3.34447 3.48674 3.56341 3.64175 3.86641 3.94631 4.15167 4.17330 4.21326 4.27886 4.41236 4.45332 4.59714 4.64867 4.70649 4.79601 4.87878 4.90222 4.99049 5.04022 5.14671 5.15731 5.35138 5.43600 5.70118 5.76328 5.80364 6.10682 6.30667 6.37086 6.93096 7.07884 7.09231 8.60156 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.002810 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.809024 B = 9961.794205 C =11014.464231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.137 3.863 3 C -0.123 4.123 4 C 0.135 3.865 5 H 0.090 0.910 6 C -0.132 4.132 7 C -0.119 4.119 8 C 0.083 3.917 9 N -0.611 5.611 10 C 0.547 3.453 11 O -0.552 6.552 12 C -0.104 4.104 13 S -0.174 6.174 14 C -0.527 4.527 15 H 0.062 0.938 16 C 0.046 3.954 17 N -0.917 5.917 18 Si 0.913 3.087 19 H -0.261 1.261 20 H -0.260 1.260 21 H -0.237 1.237 22 N -0.697 5.697 23 C 0.708 3.292 24 O -0.575 6.575 25 N -0.672 5.672 26 C 0.533 3.467 27 O -0.492 6.492 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.277 0.723 42 H 0.452 0.548 43 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 -25.726 12.586 28.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.046 3.954 3 C -0.163 4.163 4 C 0.032 3.968 5 H 0.108 0.892 6 C -0.170 4.170 7 C -0.157 4.157 8 C -0.039 4.039 9 N -0.346 5.346 10 C 0.335 3.665 11 O -0.430 6.430 12 C -0.255 4.255 13 S 0.053 5.947 14 C -0.675 4.675 15 H 0.080 0.920 16 C -0.159 4.159 17 N -0.555 5.555 18 Si 0.735 3.265 19 H -0.186 1.186 20 H -0.184 1.184 21 H -0.161 1.161 22 N -0.366 5.366 23 C 0.408 3.592 24 O -0.451 6.451 25 N -0.343 5.343 26 C 0.318 3.682 27 O -0.362 6.362 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.086 0.914 42 H 0.303 0.697 43 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -1.180 -26.299 10.834 28.467 hybrid contribution 0.828 1.047 0.167 1.345 sum -0.352 -25.252 11.001 27.546 Atomic orbital electron populations 1.22088 0.88591 1.04399 1.05600 1.21253 0.98258 0.92367 0.83529 1.22114 1.01306 0.91462 1.01405 1.21833 1.00379 0.79380 0.95184 0.89238 1.23034 1.02964 0.98554 0.92467 1.22801 1.03920 0.92652 0.96299 1.22762 0.95383 1.01168 0.84595 1.48452 1.53157 1.10191 1.22754 1.19590 0.78489 0.86689 0.81750 1.90693 1.42309 1.78390 1.31613 1.23227 1.05536 0.94481 1.02263 1.84714 1.77376 1.05077 1.27557 1.22444 1.42808 0.93072 1.09173 0.91986 1.25549 0.95297 0.93895 1.01192 1.70011 1.46179 1.00871 1.38448 0.85884 0.79899 0.80857 0.79854 1.18567 1.18438 1.16128 1.46072 1.53542 1.27410 1.09618 1.15969 0.79496 0.82236 0.81510 1.91055 1.49955 1.42696 1.61426 1.44288 1.50729 1.30528 1.08710 1.20969 0.76822 0.80575 0.89788 1.90868 1.57521 1.69490 1.18291 0.90931 0.90191 0.87646 0.90816 0.90496 0.86619 0.89095 0.89521 0.87168 0.90360 0.90123 0.87227 0.87620 0.91362 0.69713 0.71701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.36 71.98 0.60 -1.11 16 2 C 0.14 1.89 1.01 2.98 0.00 1.89 16 3 C -0.12 -2.23 4.20 30.60 0.13 -2.10 16 4 C 0.14 2.02 2.67 45.34 0.12 2.14 16 5 H 0.09 1.31 6.19 -2.38 -0.01 1.30 16 6 C -0.13 -0.79 4.51 31.78 0.14 -0.64 16 7 C -0.12 -0.78 7.10 32.06 0.23 -0.56 16 8 C 0.08 1.18 6.75 86.93 0.59 1.77 16 9 N -0.61 -13.22 3.06 -787.61 -2.41 -15.63 16 10 C 0.55 18.02 7.68 87.66 0.67 18.69 16 11 O -0.55 -22.26 14.63 -3.05 -0.04 -22.31 16 12 C -0.10 -3.86 5.09 71.24 0.36 -3.50 16 13 S -0.17 -8.69 18.55 -56.49 -1.05 -9.74 16 14 C -0.53 -30.45 10.04 67.95 0.68 -29.77 16 15 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 16 C 0.05 2.69 5.50 84.86 0.47 3.16 16 17 N -0.92 -55.61 13.97 21.65 0.30 -55.31 16 18 Si 0.91 44.88 27.74 68.60 1.90 46.78 16 19 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 22 N -0.70 -6.66 4.85 -439.32 -2.13 -8.79 16 23 C 0.71 10.76 9.00 179.34 1.61 12.37 16 24 O -0.58 -12.53 18.04 -3.86 -0.07 -12.60 16 25 N -0.67 -9.63 5.70 -440.86 -2.51 -12.15 16 26 C 0.53 9.87 7.48 87.94 0.66 10.53 16 27 O -0.49 -13.05 18.02 -2.87 -0.05 -13.10 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.72 6.61 -2.39 -0.02 0.70 16 31 H 0.07 2.01 6.51 -2.39 -0.02 1.99 16 32 H 0.08 1.37 7.99 -2.38 -0.02 1.35 16 33 H 0.12 -0.01 7.04 -2.39 -0.02 -0.03 16 34 H 0.09 0.49 6.96 -2.39 -0.02 0.48 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.22 7.48 -2.39 -0.02 1.20 16 39 H 0.11 3.75 7.96 -2.39 -0.02 3.73 16 40 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 41 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.45 2.01 5.85 -92.71 -0.54 1.47 16 43 H 0.44 4.83 8.96 -92.71 -0.83 4.00 16 Total: -1.00 -81.84 361.62 -0.13 -81.97 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -0.34 Total: 7.99 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 6.27 Total: 12.87 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -6.75 Total: -91.88 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.17 Total: -48.00 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.78 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.05 Total: -9.74 kcal Total: -81.84 -0.13 -81.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341815854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.967 kcal (2) G-P(sol) polarization free energy of solvation -81.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds