Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.53258 * 2 1 4 4 C 1.52999 * 109.47062 * 65.75559 * 3 2 1 5 5 H 1.09001 * 109.99949 * 53.01714 * 4 3 2 6 6 C 1.54326 * 109.87872 * 291.92190 * 4 3 2 7 7 C 1.55155 * 102.94068 * 218.38850 * 6 4 3 8 8 C 1.54905 * 101.58611 * 35.50357 * 7 6 4 9 9 N 1.47022 * 109.88375 * 174.11712 * 4 3 2 10 10 C 1.34774 * 125.64499 * 298.31540 * 9 4 3 11 11 O 1.21277 * 120.00350 * 4.99284 * 10 9 4 12 12 C 1.50701 * 120.00005 * 184.98795 * 10 9 4 13 13 S 1.80995 * 109.47424 * 180.02562 * 12 10 9 14 14 C 1.76199 * 100.00408 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99763 * 0.02562 * 14 13 12 16 16 C 1.38800 * 120.00467 * 179.97438 * 14 13 12 17 17 N 1.31632 * 119.99814 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00029 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47100 * 90.00067 * 18 16 14 20 20 H 1.48498 * 109.46859 * 210.00063 * 18 16 14 21 21 H 1.48498 * 109.47162 * 329.99580 * 18 16 14 22 22 N 1.47312 * 110.59699 * 237.17626 * 2 1 3 23 23 C 1.34527 * 106.61488 * 241.31913 * 22 2 1 24 24 O 1.21544 * 123.76958 * 180.02562 * 23 22 2 25 25 N 1.33782 * 112.46032 * 359.97438 * 23 22 2 26 26 C 1.35118 * 111.68915 * 0.08790 * 25 23 22 27 27 O 1.21230 * 127.34132 * 179.97438 * 26 25 23 28 28 H 1.09005 * 109.47136 * 48.50734 * 1 2 3 29 29 H 1.08996 * 109.47219 * 168.51183 * 1 2 3 30 30 H 1.09002 * 109.46973 * 288.51469 * 1 2 3 31 31 H 1.08996 * 109.47768 * 305.75394 * 3 2 1 32 32 H 1.09000 * 109.46792 * 185.74784 * 3 2 1 33 33 H 1.08994 * 110.72295 * 336.75500 * 6 4 3 34 34 H 1.09004 * 110.71698 * 100.02827 * 6 4 3 35 35 H 1.09003 * 111.00634 * 153.57685 * 7 6 4 36 36 H 1.09007 * 111.00650 * 277.42816 * 7 6 4 37 37 H 1.08998 * 110.37340 * 204.15368 * 8 7 6 38 38 H 1.09002 * 110.46106 * 81.86771 * 8 7 6 39 39 H 1.09006 * 109.47106 * 300.00429 * 12 10 9 40 40 H 1.08999 * 109.47197 * 59.99853 * 12 10 9 41 41 H 0.96993 * 119.99609 * 179.97438 * 17 16 14 42 42 H 0.97005 * 126.69169 * 61.27980 * 22 2 1 43 43 H 0.97005 * 124.18017 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0666 1.4328 0.0000 4 6 1.6908 2.1181 1.3153 5 1 2.0151 1.5090 2.1590 6 6 0.1636 2.3314 1.3782 7 6 0.0347 3.7242 2.0496 8 6 1.2605 4.4673 1.4626 9 7 2.3200 3.4451 1.3853 10 6 3.6459 3.6868 1.3807 11 8 4.4283 2.7736 1.2234 12 6 4.1563 5.0919 1.5708 13 16 5.9654 5.0895 1.5151 14 6 6.2814 6.8061 1.7560 15 1 5.4584 7.4942 1.8821 16 6 7.5878 7.2740 1.7849 17 7 8.5908 6.4352 1.6328 18 14 7.9227 9.0938 2.0410 19 1 8.0534 9.3734 3.4935 20 1 9.1827 9.4673 1.3496 21 1 6.7982 9.8874 1.4833 22 7 2.0482 -0.7475 -1.1588 23 6 2.7627 -1.7751 -0.6654 24 8 3.3327 -2.5956 -1.3577 25 7 2.7766 -1.7923 0.6722 26 6 2.0641 -0.7688 1.1922 27 8 1.8890 -0.5157 2.3648 28 1 -0.3634 0.6809 -0.7698 29 1 -0.3633 -1.0070 -0.2047 30 1 -0.3633 0.3263 0.9745 31 1 1.6318 1.9837 -0.8339 32 1 3.1516 1.4144 -0.1029 33 1 -0.2655 2.3450 0.3764 34 1 -0.3081 1.5629 1.9906 35 1 -0.8949 4.2136 1.7589 36 1 0.1092 3.6435 3.1342 37 1 1.5642 5.2792 2.1233 38 1 1.0324 4.8528 0.4689 39 1 3.7695 5.7297 0.7759 40 1 3.8227 5.4722 2.5363 41 1 9.5037 6.7623 1.6526 42 1 1.9022 -0.5396 -2.0950 43 1 3.2403 -2.4581 1.2038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341815991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = -101.888654 kcal Electronic energy + Delta-G solvation = -28124.246135 eV Core-core repulsion = 24102.526424 eV Total energy + Delta-G solvation = -4021.719711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.65503 -41.22030 -39.86940 -38.63738 -37.60979 -35.79442 -34.60295 -33.49504 -32.42819 -31.00145 -29.44504 -27.72741 -27.66205 -25.38662 -24.00069 -23.82875 -21.97500 -21.63638 -20.39621 -19.62093 -19.26704 -18.27867 -17.82761 -17.71810 -17.20586 -16.89856 -16.78965 -16.70269 -16.40397 -15.97722 -15.78587 -15.46410 -15.24707 -14.76907 -14.44412 -14.28199 -14.10734 -13.87994 -13.57484 -13.53526 -13.39525 -13.17252 -12.91257 -12.85584 -12.68071 -12.62216 -12.16151 -11.85957 -11.75926 -11.59982 -11.58030 -11.41768 -11.16046 -11.15486 -10.89310 -10.59905 -10.29299 -9.65144 -8.69684 -8.36119 -6.14995 0.44910 1.23100 1.34153 1.41734 1.44567 1.55322 1.57139 1.87501 2.01960 2.14781 2.26214 2.80331 2.98135 3.23886 3.45379 3.51482 3.70081 3.73949 3.93351 3.99010 4.19885 4.23628 4.27803 4.38134 4.43603 4.49274 4.64154 4.73603 4.80569 4.89243 4.93831 4.96207 4.99227 5.13272 5.20458 5.28731 5.39826 5.44623 5.49101 5.73235 5.80400 6.18068 6.30881 6.42629 7.04275 7.04917 7.13679 8.73183 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.002873 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.283138 B = 9743.467205 C =10950.063628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 C -0.124 4.124 4 C 0.121 3.879 5 H 0.066 0.934 6 C -0.122 4.122 7 C -0.125 4.125 8 C 0.085 3.915 9 N -0.611 5.611 10 C 0.544 3.456 11 O -0.565 6.565 12 C -0.119 4.119 13 S -0.154 6.154 14 C -0.545 4.545 15 H 0.083 0.917 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.256 1.256 22 N -0.700 5.700 23 C 0.704 3.296 24 O -0.584 6.584 25 N -0.680 5.680 26 C 0.526 3.474 27 O -0.479 6.479 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.271 0.729 42 H 0.452 0.548 43 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.730 -8.829 -3.595 29.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 C -0.163 4.163 4 C 0.018 3.982 5 H 0.084 0.916 6 C -0.160 4.160 7 C -0.162 4.162 8 C -0.037 4.037 9 N -0.346 5.346 10 C 0.332 3.668 11 O -0.443 6.443 12 C -0.271 4.271 13 S 0.074 5.926 14 C -0.693 4.693 15 H 0.101 0.899 16 C -0.192 4.192 17 N -0.549 5.549 18 Si 0.821 3.179 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.179 1.179 22 N -0.365 5.365 23 C 0.404 3.596 24 O -0.461 6.461 25 N -0.350 5.350 26 C 0.313 3.687 27 O -0.349 6.349 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.080 0.920 42 H 0.299 0.701 43 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -26.185 -10.400 -3.596 28.403 hybrid contribution 0.781 1.436 0.337 1.669 sum -25.404 -8.964 -3.260 27.136 Atomic orbital electron populations 1.22612 0.86488 1.05415 1.07037 1.21467 0.99525 0.92040 0.82634 1.22151 1.01675 0.92189 1.00299 1.21908 0.95763 0.83828 0.96737 0.91565 1.23199 0.90406 0.98211 1.04144 1.22836 0.97681 0.95220 1.00505 1.22743 0.87045 0.91201 1.02669 1.48513 1.03986 1.09367 1.72702 1.19777 0.81503 0.89791 0.75767 1.90672 1.56294 1.47056 1.50305 1.23310 1.00784 0.96962 1.05999 1.85607 0.98901 1.12943 1.95181 1.23189 0.95836 0.92787 1.57496 0.89875 1.26154 0.94656 1.04494 0.93874 1.70191 0.99730 1.37287 1.47652 0.84935 0.78171 0.76068 0.78698 1.19343 1.20313 1.17949 1.45579 1.53622 1.27288 1.09977 1.15954 0.79423 0.82520 0.81732 1.91033 1.50117 1.43478 1.61486 1.44417 1.51036 1.31005 1.08559 1.21283 0.76854 0.80231 0.90324 1.90790 1.57814 1.68464 1.17825 0.86797 0.90500 0.87720 0.86604 0.93212 0.86654 0.87833 0.86183 0.91160 0.90581 0.89091 0.87454 0.87930 0.92003 0.70082 0.72073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 7.44 71.98 0.54 -0.37 16 2 C 0.13 1.98 1.10 2.98 0.00 1.98 16 3 C -0.12 -2.39 4.37 30.59 0.13 -2.26 16 4 C 0.12 2.51 2.68 45.34 0.12 2.63 16 5 H 0.07 1.83 5.47 -2.39 -0.01 1.81 16 6 C -0.12 -1.11 4.45 31.78 0.14 -0.97 16 7 C -0.12 -1.15 7.08 31.98 0.23 -0.92 16 8 C 0.08 1.36 6.74 86.85 0.59 1.95 16 9 N -0.61 -15.87 3.06 -788.06 -2.41 -18.29 16 10 C 0.54 20.79 7.68 87.66 0.67 21.47 16 11 O -0.56 -26.84 14.65 -3.02 -0.04 -26.89 16 12 C -0.12 -4.86 5.09 71.24 0.36 -4.50 16 13 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 14 C -0.55 -31.35 9.50 67.95 0.65 -30.70 16 15 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 16 C 0.01 0.74 5.49 84.86 0.47 1.20 16 17 N -0.91 -56.60 13.22 21.65 0.29 -56.31 16 18 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 N -0.70 -10.75 5.90 -439.82 -2.60 -13.34 16 23 C 0.70 15.99 8.99 179.44 1.61 17.60 16 24 O -0.58 -17.60 18.04 -3.85 -0.07 -17.67 16 25 N -0.68 -14.15 5.71 -440.68 -2.52 -16.67 16 26 C 0.53 11.16 7.19 87.88 0.63 11.79 16 27 O -0.48 -12.32 15.66 -2.88 -0.05 -12.37 16 28 H 0.11 0.01 7.41 -2.38 -0.02 0.00 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 0.52 4.83 -2.39 -0.01 0.51 16 31 H 0.12 1.55 7.99 -2.39 -0.02 1.53 16 32 H 0.05 1.49 6.54 -2.39 -0.02 1.47 16 33 H 0.12 0.33 6.26 -2.39 -0.01 0.31 16 34 H 0.10 0.72 6.44 -2.38 -0.02 0.71 16 35 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.08 1.30 7.47 -2.39 -0.02 1.28 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 40 H 0.10 3.86 7.95 -2.40 -0.02 3.84 16 41 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.45 4.65 8.96 -92.70 -0.83 3.82 16 43 H 0.44 7.87 8.96 -92.70 -0.83 7.04 16 Total: -1.00 -89.16 360.65 -0.97 -90.13 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.58 Total: 16.67 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 6.14 Total: 18.91 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -7.24 Total: -104.61 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -0.16 Total: -56.92 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -89.16 -0.97 -90.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341815991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.762 kcal (2) G-P(sol) polarization free energy of solvation -89.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds