Wall clock time and date at job start Sat Apr 11 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41265 * 128.08132 * 2 1 4 4 N 1.30119 * 106.59147 * 180.24870 * 3 2 1 5 5 O 1.20890 * 111.98425 * 359.76009 * 4 3 2 6 6 C 1.34641 * 111.46739 * 0.02562 * 5 4 3 7 7 C 1.47508 * 126.94151 * 179.97438 * 6 5 4 8 8 O 1.21584 * 119.99600 * 186.48075 * 7 6 5 9 9 N 1.34776 * 120.00167 * 6.48301 * 7 6 5 10 10 C 1.46499 * 119.99934 * 5.06980 * 9 7 6 11 11 C 1.46500 * 119.99988 * 185.34269 * 9 7 6 12 12 C 1.52998 * 109.47634 * 269.72910 * 11 9 7 13 13 C 1.52991 * 109.47181 * 180.02562 * 12 11 9 14 14 N 1.46511 * 109.47189 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99921 * 179.97438 * 14 13 12 16 16 O 1.21275 * 120.00105 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99468 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.46830 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99766 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00392 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99786 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00155 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47054 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47658 * 119.99597 * 23 21 19 26 26 H 1.48500 * 109.47041 * 239.99555 * 23 21 19 27 27 H 1.09004 * 109.46911 * 270.14295 * 1 2 3 28 28 H 1.08998 * 109.46808 * 30.14196 * 1 2 3 29 29 H 1.08998 * 109.47015 * 150.14198 * 1 2 3 30 30 H 1.07995 * 126.69986 * 0.02562 * 3 2 1 31 31 H 1.08991 * 109.47305 * 275.60945 * 10 9 7 32 32 H 1.08999 * 109.47165 * 35.61629 * 10 9 7 33 33 H 1.09007 * 109.47034 * 155.60928 * 10 9 7 34 34 H 1.09007 * 109.46711 * 29.72799 * 11 9 7 35 35 H 1.09001 * 109.47268 * 149.72165 * 11 9 7 36 36 H 1.09002 * 109.46533 * 299.99657 * 12 11 9 37 37 H 1.08998 * 109.46920 * 59.99466 * 12 11 9 38 38 H 1.08995 * 109.47328 * 299.99628 * 13 12 11 39 39 H 1.08998 * 109.47653 * 59.99886 * 13 12 11 40 40 H 0.96999 * 119.99732 * 359.97438 * 14 13 12 41 41 H 1.09002 * 109.47119 * 299.99998 * 17 15 14 42 42 H 1.08999 * 109.47419 * 60.00473 * 17 15 14 43 43 H 0.97002 * 120.00085 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1119 0.0000 4 7 3.5890 0.6353 -0.0054 5 8 3.5995 -0.5736 -0.0040 6 6 2.3508 -1.0771 0.0022 7 6 1.9695 -2.5021 0.0052 8 8 0.8012 -2.8189 -0.1080 9 7 2.9163 -3.4527 0.1333 10 6 4.3088 -3.0710 0.3809 11 6 2.5538 -4.8676 0.0190 12 6 2.1895 -5.4141 1.4009 13 6 1.8116 -6.8918 1.2816 14 7 1.4634 -7.4152 2.6049 15 6 1.0951 -8.7041 2.7442 16 8 1.0523 -9.4308 1.7742 17 6 0.7375 -9.2426 4.1055 18 16 0.2902 -10.9908 3.9644 19 6 -0.0713 -11.3512 5.6508 20 1 0.0192 -10.5783 6.3996 21 6 -0.4712 -12.6289 6.0170 22 7 -0.5810 -13.5712 5.1045 23 14 -0.8552 -13.0109 7.8048 24 1 -0.6566 -11.7895 8.6257 25 1 -2.2647 -13.4633 7.9228 26 1 0.0510 -14.0838 8.2874 27 1 -0.3633 0.0026 1.0277 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3633 -0.8912 -0.5116 30 1 2.0948 2.1540 0.0004 31 1 4.7978 -2.8460 -0.5668 32 1 4.3356 -2.1899 1.0219 33 1 4.8292 -3.8934 0.8720 34 1 1.6989 -4.9708 -0.6494 35 1 3.3983 -5.4278 -0.3822 36 1 3.0444 -5.3109 2.0692 37 1 1.3450 -4.8538 1.8021 38 1 0.9570 -6.9954 0.6131 39 1 2.6565 -7.4517 0.8806 40 1 1.4980 -6.8341 3.3808 41 1 1.5929 -9.1395 4.7732 42 1 -0.1068 -8.6826 4.5075 43 1 -0.8602 -14.4642 5.3605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351261341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:17 Heat of formation + Delta-G solvation = -10.213683 kcal Electronic energy + Delta-G solvation = -25815.552849 eV Core-core repulsion = 21797.808462 eV Total energy + Delta-G solvation = -4017.744386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.55927 -40.40398 -39.14175 -36.86462 -35.32275 -34.94994 -33.07338 -32.42389 -31.84279 -29.41066 -28.82420 -27.44105 -26.05203 -25.43266 -23.92864 -22.80092 -21.89206 -20.68534 -20.19053 -18.44586 -18.29776 -17.83203 -16.99102 -16.53733 -16.31189 -15.77580 -15.68266 -15.61278 -14.92780 -14.79988 -14.44502 -14.17065 -13.94205 -13.83098 -13.77962 -13.52311 -13.15496 -13.12244 -12.97179 -12.80310 -12.61804 -12.43321 -11.88729 -11.83600 -11.76318 -11.13919 -11.06378 -11.01381 -10.91294 -10.76087 -10.70305 -10.01045 -9.80336 -9.48648 -9.22975 -9.07375 -8.88542 -8.22448 -6.49278 -6.21319 -3.91679 0.26198 1.53368 1.99650 2.40181 2.59131 3.05863 3.11092 3.21908 3.28863 3.33764 3.62885 3.72841 3.86223 4.14446 4.20809 4.46337 4.51779 4.57182 4.69909 4.75022 4.77444 4.99042 5.09698 5.13740 5.13963 5.18045 5.19954 5.25106 5.27606 5.35401 5.50913 5.62996 5.71106 5.78203 5.85511 5.91599 5.98227 6.14924 6.60792 6.61929 7.31991 7.56230 7.60410 7.70913 8.35950 8.62062 9.24167 10.86172 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025578 B = 0.001564 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.433442 B =17899.314340 C =18227.985980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.116 4.116 3 C -0.014 4.014 4 N -0.345 5.345 5 O 0.118 5.882 6 C -0.095 4.095 7 C 0.604 3.396 8 O -0.503 6.503 9 N -0.603 5.603 10 C 0.071 3.929 11 C 0.120 3.880 12 C -0.147 4.147 13 C 0.125 3.875 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.199 0.801 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.937 30.666 -10.562 33.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.192 4.192 4 N -0.045 5.045 5 O 0.045 5.955 6 C -0.160 4.160 7 C 0.389 3.611 8 O -0.379 6.379 9 N -0.335 5.335 10 C -0.072 4.072 11 C -0.003 4.003 12 C -0.186 4.186 13 C 0.000 4.000 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.216 0.784 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.417 29.642 -12.312 33.451 hybrid contribution -0.750 0.979 2.720 2.987 sum 8.667 30.622 -9.592 33.239 Atomic orbital electron populations 1.20385 0.86164 1.04490 1.03654 1.21705 0.99163 0.90294 1.00919 1.25028 0.87663 1.02203 1.04274 1.73750 1.23196 0.91576 1.15940 1.85099 1.28063 1.15319 1.67066 1.23949 0.84695 0.96157 1.11232 1.16600 0.85381 0.81576 0.77536 1.90877 1.17105 1.80287 1.49586 1.47729 1.08733 1.06573 1.70512 1.22037 0.80779 1.02090 1.02274 1.21514 1.02651 0.78563 0.97541 1.22148 1.02735 0.95748 0.97985 1.21127 1.00982 0.92210 0.85706 1.45973 1.71628 1.11828 1.09966 1.20303 0.75867 0.81010 0.91055 1.90701 1.50850 1.57067 1.40559 1.23533 1.04405 1.06387 0.96097 1.85398 1.87458 0.97971 1.12587 1.22915 1.53006 0.99145 0.93276 0.90872 1.24996 0.94835 0.95150 0.98627 1.70029 1.44336 1.02754 1.33155 0.86115 0.78139 0.78417 0.82806 1.19632 1.20560 1.20574 0.89998 0.90550 0.88895 0.78416 0.91515 0.90545 0.89687 0.88896 0.89202 0.90937 0.90526 0.91305 0.91447 0.76843 0.89236 0.89213 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.02 36.01 0.36 -0.16 16 2 C -0.12 -0.84 6.36 -103.98 -0.66 -1.50 16 3 C -0.01 -0.09 12.14 -17.13 -0.21 -0.30 16 4 N -0.35 -2.84 12.04 30.46 0.37 -2.48 16 5 O 0.12 0.91 8.26 15.55 0.13 1.04 16 6 C -0.09 -0.77 6.82 -36.32 -0.25 -1.02 16 7 C 0.60 5.41 7.66 -12.48 -0.10 5.31 16 8 O -0.50 -5.79 14.72 5.29 0.08 -5.72 16 9 N -0.60 -4.14 2.87 -182.82 -0.53 -4.67 16 10 C 0.07 0.31 9.36 59.85 0.56 0.87 16 11 C 0.12 0.80 5.35 -4.04 -0.02 0.78 16 12 C -0.15 -1.12 5.65 -26.74 -0.15 -1.27 16 13 C 0.12 1.34 5.67 -4.04 -0.02 1.32 16 14 N -0.74 -9.65 5.56 -60.29 -0.33 -9.99 16 15 C 0.53 9.89 7.85 -10.99 -0.09 9.81 16 16 O -0.52 -11.76 15.86 5.56 0.09 -11.67 16 17 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 23 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.70 6.63 -51.93 -0.34 0.35 16 30 H 0.20 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.35 6.02 -51.93 -0.31 0.04 16 33 H 0.08 0.25 8.03 -51.93 -0.42 -0.17 16 34 H 0.09 0.73 7.49 -51.93 -0.39 0.34 16 35 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -36.96 384.18 -7.07 -44.02 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.00 Total: -1.38 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.15 Total: -2.03 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.24 Total: -42.60 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.29 Total: -16.34 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.96 -7.07 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351261341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.811 kcal (2) G-P(sol) polarization free energy of solvation -36.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds