Wall clock time and date at job start Sat Apr 11 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41265 * 128.08132 * 2 1 4 4 N 1.30119 * 106.59147 * 180.24870 * 3 2 1 5 5 O 1.20890 * 111.98425 * 359.76009 * 4 3 2 6 6 C 1.34641 * 111.46739 * 0.02562 * 5 4 3 7 7 C 1.47508 * 126.94151 * 179.97438 * 6 5 4 8 8 O 1.21584 * 119.99600 * 186.48075 * 7 6 5 9 9 N 1.34776 * 120.00167 * 6.48301 * 7 6 5 10 10 C 1.46499 * 119.99934 * 5.06980 * 9 7 6 11 11 C 1.46500 * 119.99988 * 185.34269 * 9 7 6 12 12 C 1.52998 * 109.47634 * 269.72910 * 11 9 7 13 13 C 1.52991 * 109.47181 * 180.02562 * 12 11 9 14 14 N 1.46511 * 109.47189 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99921 * 179.97438 * 14 13 12 16 16 O 1.21275 * 120.00105 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99468 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.46830 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99766 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00392 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99786 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00155 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47054 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47658 * 119.99597 * 23 21 19 26 26 H 1.48500 * 109.47041 * 239.99555 * 23 21 19 27 27 H 1.09004 * 109.46911 * 270.14295 * 1 2 3 28 28 H 1.08998 * 109.46808 * 30.14196 * 1 2 3 29 29 H 1.08998 * 109.47015 * 150.14198 * 1 2 3 30 30 H 1.07995 * 126.69986 * 0.02562 * 3 2 1 31 31 H 1.08991 * 109.47305 * 275.60945 * 10 9 7 32 32 H 1.08999 * 109.47165 * 35.61629 * 10 9 7 33 33 H 1.09007 * 109.47034 * 155.60928 * 10 9 7 34 34 H 1.09007 * 109.46711 * 29.72799 * 11 9 7 35 35 H 1.09001 * 109.47268 * 149.72165 * 11 9 7 36 36 H 1.09002 * 109.46533 * 299.99657 * 12 11 9 37 37 H 1.08998 * 109.46920 * 59.99466 * 12 11 9 38 38 H 1.08995 * 109.47328 * 299.99628 * 13 12 11 39 39 H 1.08998 * 109.47653 * 59.99886 * 13 12 11 40 40 H 0.96999 * 119.99732 * 359.97438 * 14 13 12 41 41 H 1.09002 * 109.47119 * 299.99998 * 17 15 14 42 42 H 1.08999 * 109.47419 * 60.00473 * 17 15 14 43 43 H 0.97002 * 120.00085 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1119 0.0000 4 7 3.5890 0.6353 -0.0054 5 8 3.5995 -0.5736 -0.0040 6 6 2.3508 -1.0771 0.0022 7 6 1.9695 -2.5021 0.0052 8 8 0.8012 -2.8189 -0.1080 9 7 2.9163 -3.4527 0.1333 10 6 4.3088 -3.0710 0.3809 11 6 2.5538 -4.8676 0.0190 12 6 2.1895 -5.4141 1.4009 13 6 1.8116 -6.8918 1.2816 14 7 1.4634 -7.4152 2.6049 15 6 1.0951 -8.7041 2.7442 16 8 1.0523 -9.4308 1.7742 17 6 0.7375 -9.2426 4.1055 18 16 0.2902 -10.9908 3.9644 19 6 -0.0713 -11.3512 5.6508 20 1 0.0192 -10.5783 6.3996 21 6 -0.4712 -12.6289 6.0170 22 7 -0.5810 -13.5712 5.1045 23 14 -0.8552 -13.0109 7.8048 24 1 -0.6566 -11.7895 8.6257 25 1 -2.2647 -13.4633 7.9228 26 1 0.0510 -14.0838 8.2874 27 1 -0.3633 0.0026 1.0277 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3633 -0.8912 -0.5116 30 1 2.0948 2.1540 0.0004 31 1 4.7978 -2.8460 -0.5668 32 1 4.3356 -2.1899 1.0219 33 1 4.8292 -3.8934 0.8720 34 1 1.6989 -4.9708 -0.6494 35 1 3.3983 -5.4278 -0.3822 36 1 3.0444 -5.3109 2.0692 37 1 1.3450 -4.8538 1.8021 38 1 0.9570 -6.9954 0.6131 39 1 2.6565 -7.4517 0.8806 40 1 1.4980 -6.8341 3.3808 41 1 1.5929 -9.1395 4.7732 42 1 -0.1068 -8.6826 4.5075 43 1 -0.8602 -14.4642 5.3605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351261341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:16 Heat of formation + Delta-G solvation = -36.582970 kcal Electronic energy + Delta-G solvation = -25816.696307 eV Core-core repulsion = 21797.808462 eV Total energy + Delta-G solvation = -4018.887844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.09534 -41.06457 -40.54507 -37.56800 -36.21442 -35.63721 -34.58118 -33.77304 -32.73795 -30.71772 -29.40833 -28.01390 -27.65939 -26.73862 -24.52604 -23.46665 -22.57203 -21.78141 -21.04188 -19.81949 -19.00060 -18.85276 -17.78191 -17.74410 -17.17630 -16.88650 -16.82613 -16.74973 -16.33586 -15.83932 -15.68732 -15.28017 -14.80326 -14.59313 -14.43778 -14.33649 -14.27084 -14.03643 -13.85937 -13.62960 -13.38587 -13.24259 -13.15480 -12.99072 -12.90066 -12.66129 -12.56870 -12.30233 -11.83520 -11.70866 -11.45670 -11.36257 -11.15483 -10.98974 -10.58748 -10.26828 -10.10696 -9.84470 -8.66172 -8.34436 -6.12401 -0.32785 1.03116 1.27087 1.41197 1.41824 1.48682 1.59053 1.62351 1.78137 2.03255 2.27066 2.35630 2.99796 3.15867 3.32731 3.36572 3.64236 3.89347 3.92512 3.96465 3.98198 4.16711 4.24943 4.29835 4.30690 4.45496 4.51946 4.58686 4.63169 4.71437 4.78152 4.80275 4.89593 4.96275 5.05248 5.11264 5.24800 5.37357 5.42611 5.45402 6.04926 6.20498 6.51050 6.71779 7.00589 7.07036 7.25255 8.75058 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025578 B = 0.001564 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.433442 B =17899.314340 C =18227.985980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.122 4.122 3 C -0.005 4.005 4 N -0.366 5.366 5 O 0.116 5.884 6 C -0.108 4.108 7 C 0.599 3.401 8 O -0.538 6.538 9 N -0.597 5.597 10 C 0.067 3.933 11 C 0.119 3.881 12 C -0.130 4.130 13 C 0.124 3.876 14 N -0.714 5.714 15 C 0.533 3.467 16 O -0.566 6.566 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.273 1.273 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.231 0.769 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.416 0.584 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.905 33.030 -9.070 35.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C -0.182 4.182 4 N -0.067 5.067 5 O 0.045 5.955 6 C -0.174 4.174 7 C 0.385 3.615 8 O -0.416 6.416 9 N -0.328 5.328 10 C -0.075 4.075 11 C -0.003 4.003 12 C -0.169 4.169 13 C 0.000 4.000 14 N -0.368 5.368 15 C 0.319 3.681 16 O -0.444 6.444 17 C -0.282 4.282 18 S 0.075 5.925 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.199 1.199 27 H 0.105 0.895 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.247 0.753 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.253 0.747 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.434 32.060 -10.807 35.405 hybrid contribution -1.001 0.390 2.183 2.433 sum 9.433 32.450 -8.624 34.876 Atomic orbital electron populations 1.20402 0.85380 1.04668 1.03997 1.22016 0.99853 0.90446 1.00340 1.25528 0.86705 1.03396 1.02563 1.73729 1.24221 0.91801 1.16986 1.85091 1.27767 1.15265 1.67424 1.23944 0.85237 0.96094 1.12077 1.16782 0.85251 0.82189 0.77274 1.90857 1.18470 1.80875 1.51409 1.47807 1.09412 1.06214 1.69378 1.22228 0.79380 1.02879 1.02984 1.21532 1.03237 0.78815 0.96754 1.21992 1.03043 0.92947 0.98930 1.21265 1.00566 0.94219 0.83993 1.45741 1.69237 1.09978 1.11812 1.20051 0.75982 0.82404 0.89704 1.90690 1.53395 1.58747 1.41614 1.23381 1.05844 1.01039 0.97891 1.85574 1.88196 1.04927 1.13811 1.23247 1.53032 0.99826 0.93311 0.89894 1.26132 0.94323 0.94846 1.03871 1.70190 1.45394 1.03335 1.35847 0.84899 0.77981 0.78671 0.76346 1.18039 1.19980 1.19877 0.89517 0.88148 0.90880 0.75293 0.90682 0.90735 0.87562 0.90432 0.86674 0.88843 0.91608 0.92736 0.91063 0.74747 0.87043 0.87377 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 10.02 71.24 0.71 -0.23 16 2 C -0.12 -1.64 6.36 -19.45 -0.12 -1.76 16 3 C 0.00 -0.05 12.14 85.69 1.04 0.99 16 4 N -0.37 -5.55 12.04 -58.56 -0.71 -6.26 16 5 O 0.12 1.69 8.26 65.83 0.54 2.24 16 6 C -0.11 -1.70 6.82 24.39 0.17 -1.53 16 7 C 0.60 10.54 7.66 86.69 0.66 11.20 16 8 O -0.54 -12.64 14.72 -3.98 -0.06 -12.70 16 9 N -0.60 -7.40 2.87 -850.59 -2.44 -9.85 16 10 C 0.07 0.45 9.36 127.77 1.20 1.65 16 11 C 0.12 1.42 5.35 86.38 0.46 1.88 16 12 C -0.13 -1.71 5.65 30.59 0.17 -1.54 16 13 C 0.12 2.50 5.67 86.37 0.49 2.99 16 14 N -0.71 -17.34 5.56 -463.07 -2.57 -19.92 16 15 C 0.53 19.49 7.85 87.66 0.69 20.17 16 16 O -0.57 -26.17 15.86 -3.02 -0.05 -26.21 16 17 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 18 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 19 C -0.55 -31.26 9.50 67.95 0.65 -30.61 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.74 5.49 84.86 0.47 1.21 16 22 N -0.91 -56.08 13.22 21.65 0.29 -55.79 16 23 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 1.11 6.63 -2.39 -0.02 1.10 16 30 H 0.23 0.72 8.06 -2.91 -0.02 0.70 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.57 6.02 -2.39 -0.01 0.56 16 33 H 0.11 0.28 8.03 -2.38 -0.02 0.26 16 34 H 0.08 1.20 7.49 -2.38 -0.02 1.19 16 35 H 0.12 0.81 8.07 -2.39 -0.02 0.79 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.42 7.28 8.47 -92.71 -0.79 6.50 16 41 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 42 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -83.23 384.18 3.14 -80.09 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.26 Total: 12.68 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 7.02 Total: -0.28 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -5.44 Total: -91.81 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: 0.44 Total: -36.67 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -83.23 3.14 -80.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351261341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.503 kcal (2) G-P(sol) polarization free energy of solvation -83.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds