Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30614 * 125.42304 * 2 1 4 4 C 1.33694 * 108.99932 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.27680 * 179.73625 * 4 3 2 6 6 C 1.36349 * 107.44972 * 0.02562 * 4 3 2 7 7 C 1.46721 * 126.64211 * 179.97438 * 6 4 3 8 8 O 1.21682 * 120.00302 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99591 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99587 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46921 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46921 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00250 * 269.99991 * 12 11 10 14 14 C 1.34782 * 119.99623 * 90.00389 * 12 11 10 15 15 O 1.21281 * 120.00206 * 359.97438 * 14 12 11 16 16 C 1.50705 * 119.99676 * 179.97438 * 14 12 11 17 17 S 1.80998 * 109.47121 * 180.02562 * 16 14 12 18 18 C 1.76195 * 100.00131 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00296 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00016 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00004 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00145 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46806 * 89.99966 * 22 20 18 24 24 H 1.48501 * 109.47223 * 209.99883 * 22 20 18 25 25 H 1.48499 * 109.46914 * 330.00476 * 22 20 18 26 26 O 1.33667 * 125.42454 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47697 * 90.02296 * 1 2 3 28 28 H 1.09009 * 109.46695 * 210.02394 * 1 2 3 29 29 H 1.09003 * 109.47046 * 330.01657 * 1 2 3 30 30 H 1.08993 * 109.46745 * 90.02813 * 5 4 3 31 31 H 1.09004 * 109.47211 * 210.02587 * 5 4 3 32 32 H 1.08996 * 109.47085 * 330.02749 * 5 4 3 33 33 H 0.96994 * 120.00539 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47547 * 300.00340 * 10 9 7 35 35 H 1.09009 * 109.47295 * 60.00769 * 10 9 7 36 36 H 1.08996 * 109.47217 * 300.00456 * 11 10 9 37 37 H 1.08996 * 109.46822 * 60.00453 * 11 10 9 38 38 H 1.09010 * 109.46888 * 90.00533 * 13 12 11 39 39 H 1.08997 * 109.47252 * 209.99804 * 13 12 11 40 40 H 1.08993 * 109.47024 * 330.00676 * 13 12 11 41 41 H 1.09005 * 109.47069 * 299.99603 * 16 14 12 42 42 H 1.09002 * 109.47423 * 59.99800 * 16 14 12 43 43 H 0.97002 * 119.99648 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6864 0.0006 5 6 4.7452 1.5996 -0.0048 6 6 3.5708 -0.6769 0.0003 7 6 4.7636 -1.5313 0.0003 8 8 5.8719 -1.0290 0.0009 9 7 4.6316 -2.8727 0.0006 10 6 5.8225 -3.7258 0.0010 11 6 5.3970 -5.1955 0.0007 12 7 6.5880 -6.0486 0.0005 13 6 7.1835 -6.4749 -1.2682 14 6 7.1356 -6.4414 1.1678 15 8 6.6428 -6.0882 2.2181 16 6 8.3604 -7.3195 1.1676 17 16 8.8504 -7.6718 2.8740 18 6 10.2624 -8.6850 2.5840 19 1 10.5701 -8.9058 1.5726 20 6 10.9794 -9.1993 3.6554 21 7 10.6042 -8.9306 4.8881 22 14 12.4761 -10.2740 3.3479 23 1 13.6892 -9.4215 3.2660 24 1 12.6268 -11.2435 4.4627 25 1 12.3020 -11.0113 2.0707 26 8 2.2817 -1.0892 0.0005 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8899 0.5143 29 1 -0.3633 0.8902 0.5136 30 1 5.0354 1.8241 1.0215 31 1 5.5729 1.1095 -0.5176 32 1 4.4943 2.5254 -0.5223 33 1 3.7482 -3.2731 0.0005 34 1 6.4174 -3.5199 -0.8888 35 1 6.4169 -3.5196 0.8912 36 1 4.8019 -5.4017 0.8902 37 1 4.8029 -5.4014 -0.8897 38 1 7.9299 -5.7452 -1.5826 39 1 7.6586 -7.4473 -1.1381 40 1 6.4056 -6.5493 -2.0279 41 1 8.1371 -8.2545 0.6537 42 1 9.1743 -6.8079 0.6538 43 1 11.1055 -9.2898 5.6369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355535360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = -48.560936 kcal Electronic energy + Delta-G solvation = -26038.914821 eV Core-core repulsion = 22019.507573 eV Total energy + Delta-G solvation = -4019.407248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.84592 -40.02101 -39.39575 -36.24201 -35.68834 -34.65206 -33.22429 -32.44424 -30.89913 -29.76910 -28.76584 -27.53622 -26.33542 -25.49322 -23.52448 -22.42670 -22.00662 -20.98616 -19.43556 -18.46181 -17.72420 -17.47782 -16.83290 -16.56595 -16.20974 -15.70760 -15.40053 -15.38788 -14.81766 -14.64120 -14.41051 -14.02512 -13.91788 -13.59129 -13.52267 -13.40054 -13.28496 -13.14892 -13.01064 -12.59743 -12.50147 -12.47187 -12.36635 -11.89979 -11.53881 -11.37340 -11.25679 -11.07669 -11.03993 -10.77682 -10.51712 -9.83041 -9.56524 -9.48302 -9.11397 -9.08096 -8.73188 -8.25497 -6.52520 -6.23161 -3.94197 0.41284 1.93757 1.98254 2.53254 2.74440 2.94607 3.05571 3.21507 3.25979 3.29633 3.44747 3.59240 4.18519 4.30279 4.30843 4.60587 4.65552 4.74653 4.79105 4.91210 5.01418 5.02432 5.12052 5.14326 5.19659 5.23169 5.36480 5.37106 5.50658 5.52271 5.59830 5.62616 5.71076 5.75183 5.85839 5.90366 6.00354 6.09307 6.48756 6.93372 7.21880 7.37874 7.58060 7.68984 8.33515 8.44003 9.22138 10.84239 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.001782 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.633122 B =15705.518051 C =15899.291565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.222 3.778 3 N -0.490 5.490 4 C 0.086 3.914 5 C -0.083 4.083 6 C -0.122 4.122 7 C 0.611 3.389 8 O -0.509 6.509 9 N -0.714 5.714 10 C 0.102 3.898 11 C 0.109 3.891 12 N -0.622 5.622 13 C 0.079 3.921 14 C 0.533 3.467 15 O -0.511 6.511 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 O -0.190 6.190 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.405 0.595 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.640 15.116 -16.217 29.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.016 3.984 3 N -0.221 5.221 4 C -0.038 4.038 5 C -0.140 4.140 6 C -0.176 4.176 7 C 0.396 3.604 8 O -0.385 6.385 9 N -0.366 5.366 10 C -0.022 4.022 11 C -0.016 4.016 12 N -0.359 5.359 13 C -0.064 4.064 14 C 0.321 3.679 15 O -0.384 6.384 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 O -0.077 6.077 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.240 0.760 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.771 16.463 -14.458 29.512 hybrid contribution 1.300 -1.997 -1.479 2.804 sum -18.470 14.467 -15.937 28.362 Atomic orbital electron populations 1.20407 0.80611 1.05750 1.05192 1.26589 0.96696 0.78586 0.96496 1.70373 1.01634 1.29947 1.20156 1.22108 0.93486 0.91275 0.96933 1.20426 0.92118 0.97448 1.03998 1.22832 0.82275 0.95175 1.17365 1.16235 0.85488 0.81485 0.77200 1.90894 1.23676 1.73732 1.50247 1.45701 1.10775 1.05389 1.74687 1.21894 0.87121 0.89481 1.03725 1.21443 0.88182 0.88092 1.03838 1.47743 1.29859 1.51408 1.06902 1.21834 0.98699 1.01021 0.84837 1.20442 0.84742 0.79967 0.82704 1.90711 1.61900 1.55226 1.30585 1.23563 0.97135 1.00876 1.08498 1.85416 1.35581 1.65283 0.97195 1.22850 1.14167 1.35852 0.95504 0.90899 1.24996 0.97888 0.96268 0.94429 1.70019 1.39153 1.42991 0.98068 0.86163 0.81591 0.79661 0.78057 1.20248 1.20744 1.19693 1.84427 1.16155 1.37371 1.69744 0.88313 0.88761 0.87614 0.89740 0.88533 0.90372 0.76039 0.90767 0.90041 0.89053 0.90113 0.92517 0.90311 0.91262 0.89105 0.89074 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.00 0.38 0.18 16 2 C 0.22 1.86 8.32 -12.80 -0.11 1.76 16 3 N -0.49 -5.28 11.26 -7.07 -0.08 -5.36 16 4 C 0.09 0.98 7.16 -82.46 -0.59 0.39 16 5 C -0.08 -0.80 9.88 36.01 0.36 -0.44 16 6 C -0.12 -1.37 7.18 -36.84 -0.26 -1.64 16 7 C 0.61 7.46 7.79 -12.83 -0.10 7.36 16 8 O -0.51 -7.56 14.79 5.20 0.08 -7.48 16 9 N -0.71 -7.20 5.55 -61.60 -0.34 -7.54 16 10 C 0.10 1.15 6.00 -4.04 -0.02 1.13 16 11 C 0.11 1.14 5.56 -4.04 -0.02 1.12 16 12 N -0.62 -8.06 2.87 -181.57 -0.52 -8.58 16 13 C 0.08 0.74 10.29 59.85 0.62 1.35 16 14 C 0.53 9.74 7.69 -10.98 -0.08 9.65 16 15 O -0.51 -11.28 15.44 5.56 0.09 -11.19 16 16 C -0.15 -2.97 4.71 36.01 0.17 -2.80 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 22 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 O -0.19 -1.80 10.57 4.42 0.05 -1.76 16 27 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.16 8.14 -51.92 -0.42 -0.26 16 29 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.00 6.46 -51.93 -0.34 0.66 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.40 3.08 8.27 -40.82 -0.34 2.74 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.09 1.08 7.42 -51.93 -0.39 0.70 16 37 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 38 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 40 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 41 H 0.09 1.64 7.40 -51.91 -0.38 1.26 16 42 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -37.60 386.36 -6.83 -44.43 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.94 Total: -0.61 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 0.52 Total: 5.20 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.21 Total: -46.82 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.21 Total: -20.43 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.60 -6.83 -44.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355535360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.126 kcal (2) G-P(sol) polarization free energy of solvation -37.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds