Wall clock time and date at job start Sat Apr 11 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30614 * 125.42304 * 2 1 4 4 C 1.33694 * 108.99932 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.27680 * 179.73625 * 4 3 2 6 6 C 1.36349 * 107.44972 * 0.02562 * 4 3 2 7 7 C 1.46721 * 126.64211 * 179.97438 * 6 4 3 8 8 O 1.21682 * 120.00302 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99591 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99587 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46921 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46921 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00250 * 269.99991 * 12 11 10 14 14 C 1.34782 * 119.99623 * 90.00389 * 12 11 10 15 15 O 1.21281 * 120.00206 * 359.97438 * 14 12 11 16 16 C 1.50705 * 119.99676 * 179.97438 * 14 12 11 17 17 S 1.80998 * 109.47121 * 180.02562 * 16 14 12 18 18 C 1.76195 * 100.00131 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00296 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00016 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00004 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00145 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46806 * 89.99966 * 22 20 18 24 24 H 1.48501 * 109.47223 * 209.99883 * 22 20 18 25 25 H 1.48499 * 109.46914 * 330.00476 * 22 20 18 26 26 O 1.33667 * 125.42454 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47697 * 90.02296 * 1 2 3 28 28 H 1.09009 * 109.46695 * 210.02394 * 1 2 3 29 29 H 1.09003 * 109.47046 * 330.01657 * 1 2 3 30 30 H 1.08993 * 109.46745 * 90.02813 * 5 4 3 31 31 H 1.09004 * 109.47211 * 210.02587 * 5 4 3 32 32 H 1.08996 * 109.47085 * 330.02749 * 5 4 3 33 33 H 0.96994 * 120.00539 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47547 * 300.00340 * 10 9 7 35 35 H 1.09009 * 109.47295 * 60.00769 * 10 9 7 36 36 H 1.08996 * 109.47217 * 300.00456 * 11 10 9 37 37 H 1.08996 * 109.46822 * 60.00453 * 11 10 9 38 38 H 1.09010 * 109.46888 * 90.00533 * 13 12 11 39 39 H 1.08997 * 109.47252 * 209.99804 * 13 12 11 40 40 H 1.08993 * 109.47024 * 330.00676 * 13 12 11 41 41 H 1.09005 * 109.47069 * 299.99603 * 16 14 12 42 42 H 1.09002 * 109.47423 * 59.99800 * 16 14 12 43 43 H 0.97002 * 119.99648 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6864 0.0006 5 6 4.7452 1.5996 -0.0048 6 6 3.5708 -0.6769 0.0003 7 6 4.7636 -1.5313 0.0003 8 8 5.8719 -1.0290 0.0009 9 7 4.6316 -2.8727 0.0006 10 6 5.8225 -3.7258 0.0010 11 6 5.3970 -5.1955 0.0007 12 7 6.5880 -6.0486 0.0005 13 6 7.1835 -6.4749 -1.2682 14 6 7.1356 -6.4414 1.1678 15 8 6.6428 -6.0882 2.2181 16 6 8.3604 -7.3195 1.1676 17 16 8.8504 -7.6718 2.8740 18 6 10.2624 -8.6850 2.5840 19 1 10.5701 -8.9058 1.5726 20 6 10.9794 -9.1993 3.6554 21 7 10.6042 -8.9306 4.8881 22 14 12.4761 -10.2740 3.3479 23 1 13.6892 -9.4215 3.2660 24 1 12.6268 -11.2435 4.4627 25 1 12.3020 -11.0113 2.0707 26 8 2.2817 -1.0892 0.0005 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8899 0.5143 29 1 -0.3633 0.8902 0.5136 30 1 5.0354 1.8241 1.0215 31 1 5.5729 1.1095 -0.5176 32 1 4.4943 2.5254 -0.5223 33 1 3.7482 -3.2731 0.0005 34 1 6.4174 -3.5199 -0.8888 35 1 6.4169 -3.5196 0.8912 36 1 4.8019 -5.4017 0.8902 37 1 4.8029 -5.4014 -0.8897 38 1 7.9299 -5.7452 -1.5826 39 1 7.6586 -7.4473 -1.1381 40 1 6.4056 -6.5493 -2.0279 41 1 8.1371 -8.2545 0.6537 42 1 9.1743 -6.8079 0.6538 43 1 11.1055 -9.2898 5.6369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355535360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:45 Heat of formation + Delta-G solvation = -78.724334 kcal Electronic energy + Delta-G solvation = -26040.222804 eV Core-core repulsion = 22019.507573 eV Total energy + Delta-G solvation = -4020.715231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.58413 -41.11441 -40.56954 -37.31796 -36.55572 -35.67284 -34.58825 -33.85491 -32.05603 -30.33515 -29.99511 -28.37372 -27.69966 -27.21810 -24.49837 -23.16978 -22.80663 -21.84389 -20.73219 -19.64823 -19.29968 -18.24482 -18.10758 -17.63801 -17.05462 -16.88439 -16.79038 -16.57811 -16.41833 -15.78685 -15.39193 -15.23895 -14.98033 -14.50047 -14.36638 -14.32807 -14.28815 -14.08747 -13.86815 -13.58481 -13.50222 -13.25515 -13.19349 -13.15928 -13.10059 -12.89263 -12.64707 -12.40711 -12.11670 -12.05702 -11.72430 -11.45679 -11.14648 -10.95665 -10.49971 -10.27254 -9.89480 -9.83007 -8.67992 -8.35020 -6.13430 -0.37910 1.14180 1.23079 1.26889 1.42390 1.44340 1.51648 1.55901 1.81196 1.84731 2.26186 2.31814 2.84612 2.99259 3.25643 3.54606 3.56594 3.67236 3.76968 3.99166 4.20437 4.22801 4.26857 4.28250 4.39730 4.48887 4.58160 4.60213 4.63296 4.67765 4.69515 4.71687 4.81886 4.84411 4.96950 5.01648 5.11210 5.26542 5.41515 5.50041 6.11544 6.17892 6.20167 6.46663 6.81233 7.06248 7.08893 8.74184 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.001782 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.633122 B =15705.518051 C =15899.291565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.235 3.765 3 N -0.519 5.519 4 C 0.077 3.923 5 C -0.081 4.081 6 C -0.142 4.142 7 C 0.609 3.391 8 O -0.544 6.544 9 N -0.700 5.700 10 C 0.112 3.888 11 C 0.112 3.888 12 N -0.608 5.608 13 C 0.069 3.931 14 C 0.530 3.470 15 O -0.561 6.561 16 C -0.124 4.124 17 S -0.156 6.156 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.256 1.256 26 O -0.188 6.188 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.419 0.581 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.868 14.500 -19.189 31.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.030 3.970 3 N -0.249 5.249 4 C -0.047 4.047 5 C -0.138 4.138 6 C -0.197 4.197 7 C 0.395 3.605 8 O -0.423 6.423 9 N -0.352 5.352 10 C -0.013 4.013 11 C -0.012 4.012 12 N -0.342 5.342 13 C -0.073 4.073 14 C 0.318 3.682 15 O -0.439 6.439 16 C -0.275 4.275 17 S 0.071 5.929 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.180 1.180 26 O -0.076 6.076 27 H 0.140 0.860 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.256 0.744 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.149 0.851 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.040 15.845 -17.497 31.621 hybrid contribution 1.497 -1.703 -0.668 2.364 sum -19.542 14.142 -18.165 30.197 Atomic orbital electron populations 1.20783 0.76858 1.07269 1.07049 1.27745 0.98299 0.77724 0.93236 1.70416 1.01520 1.31037 1.21952 1.22416 0.94273 0.91664 0.96370 1.20420 0.91475 0.97754 1.04125 1.22567 0.82748 0.95004 1.19372 1.16379 0.85418 0.81978 0.76683 1.90868 1.25046 1.74436 1.51993 1.45539 1.11176 1.04706 1.73812 1.21692 0.87251 0.90192 1.02152 1.21620 0.87245 0.86807 1.05508 1.47702 1.29795 1.50209 1.06509 1.22191 1.00347 1.01161 0.83592 1.20214 0.84369 0.79905 0.83695 1.90695 1.63192 1.57231 1.32776 1.23386 0.98532 1.02586 1.03011 1.85605 1.36561 1.65949 1.04757 1.23195 1.14170 1.35719 0.96180 0.89780 1.26144 1.01383 0.97712 0.93990 1.70191 1.40890 1.44483 0.99251 0.84947 0.76941 0.77534 0.78519 1.19435 1.20332 1.17991 1.84429 1.15481 1.37708 1.70000 0.86015 0.86703 0.86534 0.89595 0.89564 0.88931 0.74405 0.89864 0.94144 0.90557 0.85149 0.91397 0.90383 0.87317 0.86965 0.87501 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 71.23 0.75 0.53 16 2 C 0.23 3.55 8.32 88.29 0.73 4.28 16 3 N -0.52 -10.73 11.26 -291.06 -3.28 -14.01 16 4 C 0.08 1.74 7.16 41.83 0.30 2.04 16 5 C -0.08 -1.59 9.88 71.24 0.70 -0.89 16 6 C -0.14 -3.19 7.18 24.05 0.17 -3.02 16 7 C 0.61 15.06 7.79 86.46 0.67 15.73 16 8 O -0.54 -16.79 14.79 -4.29 -0.06 -16.86 16 9 N -0.70 -13.66 5.55 -467.03 -2.59 -16.26 16 10 C 0.11 2.46 6.00 86.38 0.52 2.97 16 11 C 0.11 2.10 5.56 86.38 0.48 2.58 16 12 N -0.61 -14.53 2.87 -846.76 -2.43 -16.96 16 13 C 0.07 1.02 10.29 127.77 1.31 2.33 16 14 C 0.53 19.31 7.69 87.66 0.67 19.98 16 15 O -0.56 -25.70 15.44 -3.03 -0.05 -25.75 16 16 C -0.12 -4.87 4.71 71.24 0.34 -4.53 16 17 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 18 C -0.54 -31.04 9.50 67.95 0.65 -30.40 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.71 5.49 84.86 0.47 1.17 16 21 N -0.91 -56.25 13.22 21.65 0.29 -55.97 16 22 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 26 O -0.19 -3.35 10.57 -7.09 -0.07 -3.42 16 27 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.11 -0.02 8.14 -2.38 -0.02 -0.04 16 29 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.88 6.46 -2.39 -0.02 1.86 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 33 H 0.42 5.74 8.27 -92.71 -0.77 4.97 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.08 1.74 7.42 -2.39 -0.02 1.73 16 37 H 0.13 1.25 7.89 -2.39 -0.02 1.23 16 38 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.08 1.22 6.44 -2.39 -0.02 1.20 16 40 H 0.11 0.84 7.89 -2.39 -0.02 0.82 16 41 H 0.11 3.89 7.40 -2.39 -0.02 3.88 16 42 H 0.11 3.83 8.11 -2.39 -0.02 3.81 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -87.20 386.36 0.71 -86.49 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.28 Total: 14.22 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 7.77 Total: 12.80 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -8.02 Total: -103.19 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -0.19 Total: -46.03 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -87.20 0.71 -86.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355535360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.761 kcal (2) G-P(sol) polarization free energy of solvation -87.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds