Wall clock time and date at job start Sat Apr 11 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29937 * 125.37965 * 2 1 4 4 C 1.36075 * 108.47981 * 180.02562 * 3 2 1 5 5 C 1.47420 * 126.44969 * 179.73820 * 4 3 2 6 6 O 1.21607 * 119.99795 * 180.02562 * 5 4 3 7 7 N 1.34772 * 119.99827 * 0.02719 * 5 4 3 8 8 C 1.46502 * 119.99562 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.47575 * 34.99975 * 8 7 5 10 10 C 1.53002 * 109.46896 * 274.99675 * 8 7 5 11 11 C 1.53008 * 109.47095 * 154.99836 * 8 7 5 12 12 N 1.46495 * 109.46866 * 304.99918 * 11 8 7 13 13 C 1.34782 * 119.99722 * 180.02562 * 12 11 8 14 14 O 1.21282 * 120.00079 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99920 * 180.02562 * 13 12 11 16 16 S 1.80997 * 109.47351 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00247 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00086 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99968 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00318 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00114 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47095 * 90.00116 * 21 19 17 23 23 H 1.48500 * 109.47267 * 210.00258 * 21 19 17 24 24 H 1.48505 * 109.46995 * 330.00483 * 21 19 17 25 25 C 1.36096 * 107.09623 * 0.02562 * 4 3 2 26 26 C 1.50696 * 126.51816 * 179.97438 * 25 4 3 27 27 O 1.34048 * 125.37919 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47449 * 89.99523 * 1 2 3 29 29 H 1.08994 * 109.47573 * 209.99750 * 1 2 3 30 30 H 1.09004 * 109.47317 * 329.99984 * 1 2 3 31 31 H 0.96996 * 120.00531 * 359.97438 * 7 5 4 32 32 H 1.09007 * 109.47046 * 299.99985 * 10 8 7 33 33 H 1.08994 * 109.47192 * 60.00021 * 10 8 7 34 34 H 1.09003 * 109.46814 * 180.02562 * 10 8 7 35 35 H 1.09006 * 109.47000 * 64.99720 * 11 8 7 36 36 H 1.08995 * 109.47156 * 184.99393 * 11 8 7 37 37 H 0.96996 * 120.00259 * 359.97438 * 12 11 8 38 38 H 1.09006 * 109.46874 * 299.99455 * 15 13 12 39 39 H 1.08995 * 109.47739 * 59.99408 * 15 13 12 40 40 H 0.96999 * 120.00529 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.47255 * 90.00331 * 26 25 4 42 42 H 1.09002 * 109.47292 * 210.00146 * 26 25 4 43 43 H 1.09006 * 109.47703 * 330.00218 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 -0.0006 5 6 4.7440 1.5438 -0.0062 6 8 5.8604 1.0618 -0.0066 7 7 4.5878 2.8825 -0.0109 8 6 5.7632 3.7569 -0.0170 9 1 6.5558 3.2962 -0.6066 10 6 6.2508 3.9659 1.4181 11 6 5.3906 5.1080 -0.6310 12 7 4.8122 4.8974 -1.9603 13 6 4.4080 5.9531 -2.6943 14 8 4.5227 7.0773 -2.2541 15 6 3.8126 5.7364 -4.0616 16 16 3.3719 7.3346 -4.7880 17 6 2.7202 6.7985 -6.3348 18 1 2.6911 5.7455 -6.5727 19 6 2.2452 7.7296 -7.2479 20 7 1.7579 7.3292 -8.4032 21 14 2.2962 9.5511 -6.8368 22 1 3.5855 10.1265 -7.2969 23 1 1.1735 10.2441 -7.5184 24 1 2.1701 9.7307 -5.3680 25 6 3.5659 -0.6971 -0.0015 26 6 4.7800 -1.5897 -0.0030 27 8 2.2830 -1.0929 -0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.6973 3.2670 -0.0109 32 1 5.4582 4.4268 2.0076 33 1 6.5163 3.0035 1.8554 34 1 7.1251 4.6169 1.4135 35 1 4.6621 5.6085 0.0071 36 1 6.2838 5.7267 -0.7171 37 1 4.7209 3.9983 -2.3126 38 1 4.5406 5.2353 -4.6997 39 1 2.9190 5.1183 -3.9751 40 1 1.4263 7.9799 -9.0416 41 1 5.0735 -1.8057 1.0244 42 1 4.5453 -2.5216 -0.5173 43 1 5.5997 -1.0875 -0.5170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358340024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:54 Heat of formation + Delta-G solvation = -62.599836 kcal Electronic energy + Delta-G solvation = -26540.115579 eV Core-core repulsion = 22520.099559 eV Total energy + Delta-G solvation = -4020.016020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -43.82742 -40.19109 -39.15715 -36.61064 -35.30988 -33.74566 -33.45285 -32.43801 -31.50568 -30.44536 -29.51213 -26.74992 -26.02804 -25.53056 -23.94586 -22.27921 -21.14695 -20.74362 -20.44725 -18.48855 -17.82581 -17.45025 -16.78534 -16.39468 -16.33851 -15.76485 -15.20720 -15.15498 -14.96336 -14.61871 -14.54677 -14.00835 -13.88890 -13.83802 -13.55430 -13.17179 -13.15395 -13.09588 -13.00057 -12.87670 -12.78818 -12.72003 -12.28826 -11.92208 -11.63503 -11.35114 -11.26168 -11.14498 -11.00785 -10.60718 -10.43359 -9.86179 -9.60727 -9.49675 -9.09774 -9.05427 -8.98729 -8.50284 -6.91681 -6.28758 -4.00496 0.70408 1.61546 2.06613 2.67565 2.78464 2.95171 2.96044 3.29713 3.34041 3.48495 3.50565 3.65443 4.18303 4.29376 4.33230 4.43002 4.66952 4.72216 4.80452 4.91017 4.93489 4.93980 5.01852 5.05834 5.10275 5.25448 5.26202 5.30213 5.36451 5.47722 5.55358 5.62830 5.66680 5.75375 5.77189 5.87258 6.01935 6.11637 6.45983 6.97283 7.26525 7.55624 7.81243 7.94342 8.42024 8.45590 9.17370 10.80539 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.002473 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.635025 B =11317.976829 C =12832.661324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.197 3.803 3 N -0.458 5.458 4 C -0.080 4.080 5 C 0.608 3.392 6 O -0.534 6.534 7 N -0.710 5.710 8 C 0.131 3.869 9 H 0.099 0.901 10 C -0.160 4.160 11 C 0.114 3.886 12 N -0.737 5.737 13 C 0.532 3.468 14 O -0.518 6.518 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.042 3.958 26 C -0.077 4.077 27 O -0.197 6.197 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.412 0.588 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.400 0.600 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 -19.006 21.907 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.012 4.012 3 N -0.189 5.189 4 C -0.200 4.200 5 C 0.394 3.606 6 O -0.411 6.411 7 N -0.362 5.362 8 C 0.027 3.973 9 H 0.117 0.883 10 C -0.219 4.219 11 C -0.011 4.011 12 N -0.392 5.392 13 C 0.318 3.682 14 O -0.393 6.393 15 C -0.275 4.275 16 S 0.086 5.914 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.014 4.014 26 C -0.133 4.133 27 O -0.085 6.085 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.249 0.751 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.234 0.766 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.656 -16.781 22.469 28.281 hybrid contribution -0.582 -1.470 -0.831 1.787 sum 3.074 -18.251 21.637 28.473 Atomic orbital electron populations 1.20346 0.80657 1.05386 1.05255 1.26249 0.96535 0.78086 1.00305 1.70758 1.00551 1.29964 1.17579 1.21421 0.92226 0.92234 1.14104 1.16667 0.86194 0.81780 0.75945 1.90787 1.24248 1.75210 1.50876 1.45908 1.10788 1.05240 1.74221 1.21320 0.88451 0.89578 0.97985 0.88334 1.22110 1.01878 1.02874 0.95060 1.21629 0.99971 0.95485 0.84031 1.45949 1.65554 1.09906 1.17821 1.20275 0.77160 0.84394 0.86377 1.90703 1.53846 1.22991 1.71742 1.23277 1.03747 1.05220 0.95255 1.84764 1.80834 1.06089 1.19745 1.22316 1.47014 0.97598 0.99937 0.89419 1.24715 0.93356 0.99363 0.93890 1.69936 1.39540 1.35186 1.07087 0.86731 0.78768 0.84686 0.81639 1.19207 1.19947 1.15898 1.23740 0.83946 0.94494 0.99253 1.20613 0.90201 0.97850 1.04660 1.84338 1.16353 1.38051 1.69736 0.88427 0.89162 0.87714 0.75149 0.91930 0.91513 0.90873 0.90768 0.89716 0.76557 0.88530 0.88473 0.91938 0.89011 0.90034 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.20 1.76 8.30 -13.08 -0.11 1.65 16 3 N -0.46 -4.99 11.06 -7.65 -0.08 -5.08 16 4 C -0.08 -0.89 7.00 -83.02 -0.58 -1.47 16 5 C 0.61 6.79 7.78 -12.52 -0.10 6.69 16 6 O -0.53 -6.69 14.46 5.27 0.08 -6.62 16 7 N -0.71 -6.83 4.51 -54.88 -0.25 -7.08 16 8 C 0.13 1.17 2.73 -67.92 -0.19 0.98 16 9 H 0.10 0.95 7.58 -51.93 -0.39 0.55 16 10 C -0.16 -1.23 9.48 37.16 0.35 -0.87 16 11 C 0.11 1.19 5.23 -4.04 -0.02 1.17 16 12 N -0.74 -9.37 5.39 -60.29 -0.32 -9.69 16 13 C 0.53 9.38 7.85 -10.98 -0.09 9.30 16 14 O -0.52 -11.01 15.86 5.56 0.09 -10.92 16 15 C -0.12 -2.43 6.16 36.00 0.22 -2.21 16 16 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 17 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.69 13.97 55.49 0.78 -25.92 16 21 Si 0.86 21.84 27.74 -169.99 -4.71 17.12 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 25 C 0.04 0.41 7.44 -35.08 -0.26 0.15 16 26 C -0.08 -0.53 9.88 36.00 0.36 -0.17 16 27 O -0.20 -1.85 10.73 6.52 0.07 -1.78 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.41 3.97 8.33 -40.82 -0.34 3.63 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.40 4.46 8.14 -40.82 -0.33 4.13 16 38 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 39 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 40 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.11 0.89 6.47 -51.93 -0.34 0.56 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -36.27 385.68 -6.41 -42.69 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.05 Total: 3.78 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 0.18 Total: 3.25 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.12 Total: -47.77 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.23 Total: -19.32 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.27 -6.41 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358340024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.914 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds