Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99633 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00205 * 3 2 1 5 5 H 1.48506 * 109.47360 * 30.00263 * 3 2 1 6 6 H 1.48501 * 109.47053 * 149.99988 * 3 2 1 7 7 C 1.38793 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00357 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99763 * 180.02562 * 7 2 1 10 10 C 1.81003 * 100.00010 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47291 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99949 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00309 * 179.72597 * 11 10 9 14 14 C 1.46496 * 120.00083 * 180.27998 * 13 11 10 15 15 C 1.53004 * 109.47143 * 175.01713 * 14 13 11 16 16 H 1.09007 * 112.73372 * 314.99181 * 15 14 13 17 17 C 1.53492 * 113.46935 * 85.80787 * 15 14 13 18 18 C 1.53507 * 83.34491 * 140.85011 * 17 15 14 19 19 N 1.47068 * 113.46718 * 184.24910 * 15 14 13 20 20 C 1.34771 * 136.06174 * 38.13566 * 19 15 14 21 21 O 1.21285 * 119.99765 * 5.03693 * 20 19 15 22 22 C 1.50699 * 120.00342 * 185.03884 * 20 19 15 23 23 H 1.09000 * 110.21475 * 320.47536 * 22 20 19 24 24 C 1.54488 * 110.24439 * 82.49442 * 22 20 19 25 25 C 1.54625 * 101.76617 * 144.41732 * 24 22 20 26 26 C 1.51287 * 104.19511 * 335.20481 * 25 24 22 27 27 O 1.21282 * 124.94177 * 196.23335 * 26 25 24 28 28 N 1.34421 * 110.11690 * 16.24730 * 26 25 24 29 29 H 0.97002 * 120.00670 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.46844 * 60.00338 * 10 9 7 31 31 H 1.08996 * 109.46948 * 300.00242 * 10 9 7 32 32 H 0.97002 * 119.99658 * 0.27612 * 13 11 10 33 33 H 1.08997 * 109.47132 * 295.01319 * 14 13 11 34 34 H 1.08999 * 109.47407 * 55.01754 * 14 13 11 35 35 H 1.08991 * 114.20961 * 254.43626 * 17 15 14 36 36 H 1.08996 * 114.20737 * 27.26802 * 17 15 14 37 37 H 1.08989 * 113.46878 * 219.15632 * 18 17 15 38 38 H 1.08997 * 113.46601 * 88.71041 * 18 17 15 39 39 H 1.09003 * 110.96696 * 262.53631 * 24 22 20 40 40 H 1.08998 * 110.96910 * 26.29839 * 24 22 20 41 41 H 1.08994 * 110.48751 * 216.52441 * 25 24 22 42 42 H 1.08999 * 110.48454 * 93.87846 * 25 24 22 43 43 H 0.97001 * 124.35173 * 180.38885 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7723 -1.2019 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5731 -3.2324 -0.0002 12 8 6.3441 -2.2961 0.0003 13 7 6.0459 -4.4945 0.0051 14 6 7.4909 -4.7354 0.0112 15 6 7.7571 -6.2364 0.1418 16 1 7.1379 -6.7093 0.9042 17 6 7.7472 -6.9782 -1.2020 18 6 8.9206 -7.7495 -0.5816 19 7 9.1848 -6.5702 0.2567 20 6 10.2613 -6.0327 0.8637 21 8 10.1314 -5.0653 1.5836 22 6 11.6264 -6.6335 0.6479 23 1 11.5604 -7.7213 0.6293 24 6 12.2382 -6.1106 -0.6708 25 6 13.7368 -6.0080 -0.3042 26 6 13.7406 -5.8466 1.2000 27 8 14.6844 -5.4568 1.8545 28 7 12.5458 -6.1983 1.7058 29 1 -0.4851 0.8400 0.0004 30 1 3.6441 -3.4312 -0.8905 31 1 3.6434 -3.4316 0.8895 32 1 5.4292 -5.2433 0.0050 33 1 7.9242 -4.3692 -0.9195 34 1 7.9430 -4.2116 0.8534 35 1 6.8560 -7.5819 -1.3727 36 1 8.0213 -6.3591 -2.0562 37 1 9.7202 -7.9665 -1.2897 38 1 8.6113 -8.6261 -0.0125 39 1 12.0828 -6.8219 -1.4819 40 1 11.8318 -5.1325 -0.9285 41 1 14.1879 -5.1386 -0.7823 42 1 14.2630 -6.9184 -0.5914 43 1 12.3204 -6.1686 2.6488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358586803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -98.242270 kcal Electronic energy + Delta-G solvation = -26424.510189 eV Core-core repulsion = 22402.948596 eV Total energy + Delta-G solvation = -4021.561592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.08210 -41.13385 -40.42967 -39.03628 -37.24854 -35.79654 -34.67730 -32.42570 -31.94066 -31.16195 -28.96492 -28.59756 -27.82355 -24.18614 -24.01859 -22.66917 -21.97894 -21.58767 -20.21357 -19.79195 -18.68507 -18.44816 -17.93519 -17.65763 -17.10696 -16.98875 -16.83689 -16.66334 -16.11397 -15.79031 -15.47289 -15.32238 -14.94764 -14.90525 -14.73643 -14.67396 -14.31794 -14.02838 -13.66221 -13.61793 -13.44450 -13.36307 -13.05989 -13.01417 -12.89043 -12.68109 -12.37587 -12.11302 -11.89878 -11.61725 -11.18721 -11.17936 -11.09612 -11.01766 -10.53672 -10.28672 -10.16838 -9.82122 -9.01369 -8.52503 -6.23200 0.96072 1.29424 1.29904 1.38644 1.45717 1.51335 1.52307 1.66856 2.21494 2.25004 2.37858 2.71922 2.85722 3.15077 3.27309 3.40914 3.58459 3.72272 3.87421 3.96189 3.98942 4.02222 4.05796 4.23495 4.38882 4.45722 4.52642 4.55939 4.69622 4.74587 4.79404 4.88851 4.96687 5.02537 5.09282 5.27606 5.38200 5.62190 5.70297 5.86353 6.10937 6.42125 6.63398 6.93155 6.94561 7.09567 7.16658 8.59540 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.001963 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.674504 B =14257.043699 C =15187.815192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.047 3.953 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.241 1.241 7 C -0.525 4.525 8 H 0.067 0.933 9 S -0.186 6.186 10 C -0.107 4.107 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.703 5.703 14 C 0.120 3.880 15 C 0.115 3.885 16 H 0.117 0.883 17 C -0.137 4.137 18 C 0.103 3.897 19 N -0.641 5.641 20 C 0.522 3.478 21 O -0.584 6.584 22 C 0.125 3.875 23 H 0.150 0.850 24 C -0.111 4.111 25 C -0.144 4.144 26 C 0.508 3.492 27 O -0.588 6.588 28 N -0.716 5.716 29 H 0.277 0.723 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.422 0.578 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.150 0.850 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.144 0.856 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.337 -28.568 -7.205 36.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.166 1.166 7 C -0.672 4.672 8 H 0.085 0.915 9 S 0.041 5.959 10 C -0.258 4.258 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.358 5.358 14 C -0.005 4.005 15 C 0.011 3.989 16 H 0.135 0.865 17 C -0.175 4.175 18 C -0.017 4.017 19 N -0.376 5.376 20 C 0.312 3.688 21 O -0.464 6.464 22 C 0.017 3.983 23 H 0.167 0.833 24 C -0.149 4.149 25 C -0.184 4.184 26 C 0.297 3.703 27 O -0.468 6.468 28 N -0.370 5.370 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.260 0.740 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.143 0.857 36 H 0.116 0.884 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.168 0.832 40 H 0.088 0.912 41 H 0.127 0.873 42 H 0.161 0.839 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 24.101 -26.171 -6.508 36.167 hybrid contribution -1.622 0.145 1.148 1.992 sum 22.478 -26.026 -5.360 34.804 Atomic orbital electron populations 1.70005 1.07119 1.28967 1.49157 1.25514 0.95266 1.02085 0.93032 0.85907 0.80570 0.79932 0.80207 1.18603 1.18374 1.16556 1.22430 0.89939 0.96784 1.58095 0.91505 1.84874 1.06808 1.06649 1.97610 1.23243 0.95220 0.99380 1.07912 1.20092 0.89650 0.83312 0.75133 1.90717 1.59611 1.44162 1.50184 1.45441 1.07916 1.06995 1.75485 1.21419 0.80573 0.97282 1.01179 1.23177 0.82582 0.92568 1.00541 0.86523 1.23607 1.01134 0.98592 0.94129 1.23409 0.98111 0.88293 0.91883 1.49877 1.06808 1.29112 1.51839 1.20978 0.86393 0.83352 0.78115 1.90808 1.86385 1.29795 1.39371 1.21832 0.85055 1.01933 0.89506 0.83304 1.22719 0.92798 1.04114 0.95288 1.22435 0.98742 1.07552 0.89659 1.21748 0.81349 0.74309 0.92920 1.90743 1.39046 1.48735 1.68322 1.46211 1.13450 1.66852 1.10474 0.91370 0.85979 0.86591 0.73986 0.92100 0.94459 0.85688 0.88416 0.86493 0.86610 0.83176 0.91245 0.87323 0.83866 0.75325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.41 13.97 21.65 0.30 -55.11 16 2 C 0.05 2.74 5.50 84.86 0.47 3.20 16 3 Si 0.91 45.51 27.74 68.60 1.90 47.42 16 4 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.24 -12.22 6.74 99.48 0.67 -11.55 16 7 C -0.52 -30.36 10.04 67.95 0.68 -29.68 16 8 H 0.07 4.02 8.03 -2.91 -0.02 4.00 16 9 S -0.19 -9.48 18.55 -56.49 -1.05 -10.52 16 10 C -0.11 -3.90 6.16 71.24 0.44 -3.46 16 11 C 0.53 18.40 7.85 87.66 0.69 19.09 16 12 O -0.57 -25.75 15.86 -3.04 -0.05 -25.80 16 13 N -0.70 -15.55 5.55 -463.07 -2.57 -18.12 16 14 C 0.12 2.63 5.47 86.38 0.47 3.10 16 15 C 0.12 1.16 4.07 41.80 0.17 1.33 16 16 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 17 C -0.14 -0.12 8.02 30.93 0.25 0.13 16 18 C 0.10 -0.22 8.42 83.19 0.70 0.48 16 19 N -0.64 -5.99 3.57 -833.60 -2.97 -8.96 16 20 C 0.52 8.47 7.14 87.66 0.63 9.10 16 21 O -0.58 -17.24 16.18 -3.05 -0.05 -17.29 16 22 C 0.12 1.01 3.76 44.70 0.17 1.18 16 23 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 24 C -0.11 -0.45 6.67 31.65 0.21 -0.24 16 25 C -0.14 -1.06 6.86 30.59 0.21 -0.85 16 26 C 0.51 9.61 8.43 87.90 0.74 10.36 16 27 O -0.59 -17.42 18.03 -3.03 -0.05 -17.48 16 28 N -0.72 -11.37 5.47 -442.95 -2.42 -13.79 16 29 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 31 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 32 H 0.42 5.50 8.48 -92.71 -0.79 4.71 16 33 H 0.06 1.43 7.89 -2.39 -0.02 1.41 16 34 H 0.04 1.20 7.14 -2.39 -0.02 1.18 16 35 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.10 0.25 7.95 -2.39 -0.02 0.23 16 37 H 0.12 -0.90 8.14 -2.39 -0.02 -0.92 16 38 H 0.12 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.15 -0.81 8.14 -2.39 -0.02 -0.83 16 40 H 0.07 0.63 7.90 -2.39 -0.02 0.61 16 41 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.41 7.35 8.96 -92.71 -0.83 6.52 16 Total: -1.00 -99.27 380.32 -1.73 -101.00 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -0.60 Total: 4.91 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.82 Total: 13.74 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -7.66 Total: -95.98 kcal Atomic # 8 Polarization: -60.41 SS G_CDS: -0.15 Total: -60.56 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.42 kcal Atomic # 16 Polarization: -9.48 SS G_CDS: -1.05 Total: -10.52 kcal Total: -99.27 -1.73 -101.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358586803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.760 kcal (2) G-P(sol) polarization free energy of solvation -99.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds