Wall clock time and date at job start Sat Apr 11 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86793 * 120.00421 * 2 1 4 4 H 1.48503 * 109.47413 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47042 * 299.99936 * 3 2 1 6 6 H 1.48497 * 109.47152 * 59.99871 * 3 2 1 7 7 C 1.38809 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99984 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99985 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46870 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00374 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99413 * 179.97438 * 11 10 9 14 14 C 1.47803 * 134.58867 * 4.87138 * 13 11 10 15 15 C 1.53942 * 86.16512 * 204.57562 * 14 13 11 16 16 C 1.47578 * 134.48664 * 184.91686 * 13 11 10 17 17 H 1.09007 * 113.77003 * 269.78073 * 16 13 11 18 18 C 1.53000 * 113.77480 * 41.07197 * 16 13 11 19 19 N 1.46508 * 109.46786 * 279.35134 * 18 16 13 20 20 C 1.34776 * 119.99568 * 174.81761 * 19 18 16 21 21 O 1.21280 * 120.00327 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99530 * 179.97438 * 20 19 18 23 23 H 1.09004 * 115.55142 * 330.97853 * 22 20 19 24 24 C 1.52997 * 117.49691 * 116.64848 * 22 20 19 25 25 C 1.53005 * 117.49735 * 185.30952 * 22 20 19 26 26 H 1.09000 * 117.49392 * 145.02389 * 25 22 20 27 27 C 1.50693 * 117.49940 * 359.97438 * 25 22 20 28 28 N 1.34776 * 119.99966 * 84.97164 * 27 25 22 29 29 O 1.21284 * 120.00130 * 264.98211 * 27 25 22 30 30 H 0.96995 * 119.99297 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.47058 * 59.99984 * 10 9 7 32 32 H 1.08997 * 109.46813 * 299.99403 * 10 9 7 33 33 H 1.08999 * 113.66788 * 90.26632 * 14 13 11 34 34 H 1.09002 * 113.93561 * 318.92046 * 14 13 11 35 35 H 1.08998 * 113.74179 * 222.13975 * 15 14 13 36 36 H 1.09001 * 113.84048 * 90.83703 * 15 14 13 37 37 H 1.08993 * 109.47381 * 159.35005 * 18 16 13 38 38 H 1.09002 * 109.46813 * 39.34494 * 18 16 13 39 39 H 0.96994 * 119.99926 * 354.81380 * 19 18 16 40 40 H 1.09004 * 117.50136 * 214.97587 * 24 22 20 41 41 H 1.09001 * 117.50345 * 359.97438 * 24 22 20 42 42 H 0.96999 * 120.00268 * 0.02562 * 28 27 25 43 43 H 0.97004 * 120.00021 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8916 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7908 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 4.3131 -6.4775 0.0891 15 6 4.1303 -7.8228 -0.6365 16 6 2.6915 -7.8084 -0.0891 17 1 2.5846 -8.2992 0.8784 18 6 1.6403 -8.2580 -1.1059 19 7 0.3063 -8.1471 -0.5106 20 6 -0.7879 -8.3906 -1.2589 21 8 -0.6681 -8.7019 -2.4249 22 6 -2.1601 -8.2771 -0.6464 23 1 -2.2167 -8.4852 0.4221 24 6 -3.0982 -7.2071 -1.2084 25 6 -3.3552 -8.6857 -1.5100 26 1 -4.1982 -9.1622 -1.0095 27 6 -3.0701 -9.1703 -2.9081 28 7 -2.7555 -10.4632 -3.1221 29 8 -3.1235 -8.3968 -3.8407 30 1 -0.4849 0.8401 -0.0004 31 1 3.1243 -3.7315 0.8905 32 1 3.1242 -3.7316 -0.8895 33 1 4.6830 -6.5755 1.1098 34 1 4.8608 -5.7356 -0.4922 35 1 4.7456 -8.6266 -0.2323 36 1 4.1873 -7.7489 -1.7225 37 1 1.8274 -9.2940 -1.3879 38 1 1.6969 -7.6245 -1.9911 39 1 0.2105 -7.8985 0.4221 40 1 -3.7724 -6.7115 -0.5097 41 1 -2.7228 -6.5849 -2.0208 42 1 -2.7130 -11.0820 -2.3763 43 1 -2.5716 -10.7751 -4.0221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358641354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:44 Heat of formation + Delta-G solvation = -45.846661 kcal Electronic energy + Delta-G solvation = -27294.982016 eV Core-core repulsion = 23275.692468 eV Total energy + Delta-G solvation = -4019.289548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63986 -40.14609 -38.60211 -37.42714 -35.90083 -34.52028 -33.41769 -32.43860 -30.79905 -28.85663 -28.12839 -25.49436 -25.21057 -24.16283 -22.71964 -22.03124 -20.53271 -19.91716 -18.88651 -17.99319 -17.65016 -16.94264 -16.63732 -16.50336 -16.12950 -15.74778 -15.19244 -15.05605 -14.81775 -14.75842 -14.32829 -14.01954 -13.92931 -13.68739 -13.23124 -13.07464 -12.84286 -12.51146 -12.39895 -12.22254 -12.03852 -11.95263 -11.60472 -11.25598 -11.07861 -11.02021 -10.78016 -10.76437 -10.67935 -9.87462 -9.81981 -9.72993 -9.50786 -9.32674 -9.08330 -8.99103 -8.65217 -8.24752 -6.50929 -6.22843 -3.93204 2.42504 2.62175 2.83799 3.01731 3.12322 3.20802 3.23681 3.29922 3.52245 3.57684 3.86739 4.14158 4.19253 4.53794 4.60844 4.63469 4.65845 4.74056 4.79052 4.95734 5.01608 5.10317 5.12588 5.12892 5.27513 5.33609 5.47557 5.50771 5.57727 5.67789 5.75663 5.83958 5.93296 6.08723 6.09914 6.13692 6.45284 6.89230 7.43814 7.54320 7.58795 7.77930 8.27854 8.34274 8.45700 8.52750 9.22689 10.84613 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.003050 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.847621 B = 9176.966769 C =11211.656665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.145 4.145 11 C 0.554 3.446 12 O -0.506 6.506 13 N -0.649 5.649 14 C 0.103 3.897 15 C -0.142 4.142 16 C 0.121 3.879 17 H 0.095 0.905 18 C 0.124 3.876 19 N -0.705 5.705 20 C 0.542 3.458 21 O -0.533 6.533 22 C -0.169 4.169 23 H 0.129 0.871 24 C -0.108 4.108 25 C -0.168 4.168 26 H 0.135 0.865 27 C 0.567 3.433 28 N -0.848 5.848 29 O -0.538 6.538 30 H 0.268 0.732 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.405 0.595 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.395 0.605 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -24.081 3.024 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.296 4.296 11 C 0.344 3.656 12 O -0.379 6.379 13 N -0.390 5.390 14 C -0.020 4.020 15 C -0.181 4.181 16 C 0.017 3.983 17 H 0.113 0.887 18 C -0.001 4.001 19 N -0.356 5.356 20 C 0.328 3.672 21 O -0.411 6.411 22 C -0.191 4.191 23 H 0.147 0.853 24 C -0.146 4.146 25 C -0.189 4.189 26 H 0.152 0.848 27 C 0.352 3.648 28 N -0.410 5.410 29 O -0.414 6.414 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.240 0.760 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.222 0.778 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.522 -23.636 1.703 23.746 hybrid contribution 2.188 1.046 0.743 2.537 sum 3.711 -22.590 2.446 23.023 Atomic orbital electron populations 1.70026 1.05929 1.27358 1.46872 1.24994 0.95036 0.99027 0.94532 0.86118 0.79565 0.81894 0.77926 1.19647 1.20532 1.20553 1.22892 0.94889 0.91641 1.58914 0.90972 1.85366 1.04798 0.96288 1.96695 1.23467 1.06510 0.94984 1.04602 1.20057 0.85655 0.85170 0.74740 1.90690 1.14603 1.84808 1.47796 1.50319 1.07814 1.05105 1.75735 1.23112 0.81859 0.96508 1.00565 1.23542 0.94656 0.97889 1.01984 1.23010 0.94971 0.81841 0.98476 0.88686 1.21464 0.81041 1.01221 0.96359 1.45586 1.05048 1.70025 1.14957 1.19489 0.85180 0.76559 0.86020 1.90724 1.86334 1.47972 1.16051 1.22280 0.89086 1.07985 0.99732 0.85272 1.23020 0.98953 0.89890 1.02721 1.22283 0.99879 1.01770 0.94984 0.84772 1.19133 0.74591 0.81950 0.89146 1.43549 1.74268 1.10539 1.12653 1.90725 1.51743 1.54513 1.44380 0.92222 0.89594 0.89534 0.89722 0.89749 0.89471 0.88554 0.90650 0.90743 0.76014 0.86562 0.86804 0.77817 0.77103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -2.95 5.92 36.01 0.21 -2.74 16 11 C 0.55 10.11 7.95 -10.98 -0.09 10.02 16 12 O -0.51 -10.63 14.46 5.56 0.08 -10.55 16 13 N -0.65 -8.35 3.50 -170.17 -0.60 -8.95 16 14 C 0.10 0.88 8.63 -2.85 -0.02 0.85 16 15 C -0.14 -0.95 7.86 -25.79 -0.20 -1.15 16 16 C 0.12 1.13 4.26 -66.86 -0.29 0.85 16 17 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 18 C 0.12 1.42 5.33 -4.04 -0.02 1.40 16 19 N -0.71 -8.89 4.27 -60.29 -0.26 -9.15 16 20 C 0.54 7.75 7.58 -10.99 -0.08 7.66 16 21 O -0.53 -9.29 13.83 -1.66 -0.02 -9.32 16 22 C -0.17 -1.94 6.19 -91.77 -0.57 -2.51 16 23 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 24 C -0.11 -1.41 9.75 -26.69 -0.26 -1.67 16 25 C -0.17 -1.86 6.18 -91.73 -0.57 -2.42 16 26 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 27 C 0.57 7.99 5.11 -10.99 -0.06 7.94 16 28 N -0.85 -8.42 8.55 31.22 0.27 -8.15 16 29 O -0.54 -10.38 17.35 -1.67 -0.03 -10.41 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 32 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 39 H 0.40 4.77 7.95 -40.82 -0.32 4.45 16 40 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.11 1.92 7.92 -51.93 -0.41 1.51 16 42 H 0.39 2.61 8.83 -40.82 -0.36 2.25 16 43 H 0.40 3.75 8.93 -40.82 -0.36 3.39 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -40.26 383.77 -9.10 -49.36 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.07 Total: 8.89 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.74 Total: 5.24 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.15 Total: -51.70 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: 0.03 Total: -30.27 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -40.26 -9.10 -49.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358641354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.512 kcal (2) G-P(sol) polarization free energy of solvation -40.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds