Wall clock time and date at job start Sat Apr 11 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86793 * 120.00421 * 2 1 4 4 H 1.48503 * 109.47413 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47042 * 299.99936 * 3 2 1 6 6 H 1.48497 * 109.47152 * 59.99871 * 3 2 1 7 7 C 1.38809 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99984 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99985 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46870 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00374 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99413 * 179.97438 * 11 10 9 14 14 C 1.47803 * 134.58867 * 4.87138 * 13 11 10 15 15 C 1.53942 * 86.16512 * 204.57562 * 14 13 11 16 16 C 1.47578 * 134.48664 * 184.91686 * 13 11 10 17 17 H 1.09007 * 113.77003 * 269.78073 * 16 13 11 18 18 C 1.53000 * 113.77480 * 41.07197 * 16 13 11 19 19 N 1.46508 * 109.46786 * 279.35134 * 18 16 13 20 20 C 1.34776 * 119.99568 * 174.81761 * 19 18 16 21 21 O 1.21280 * 120.00327 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99530 * 179.97438 * 20 19 18 23 23 H 1.09004 * 115.55142 * 330.97853 * 22 20 19 24 24 C 1.52997 * 117.49691 * 116.64848 * 22 20 19 25 25 C 1.53005 * 117.49735 * 185.30952 * 22 20 19 26 26 H 1.09000 * 117.49392 * 145.02389 * 25 22 20 27 27 C 1.50693 * 117.49940 * 359.97438 * 25 22 20 28 28 N 1.34776 * 119.99966 * 84.97164 * 27 25 22 29 29 O 1.21284 * 120.00130 * 264.98211 * 27 25 22 30 30 H 0.96995 * 119.99297 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.47058 * 59.99984 * 10 9 7 32 32 H 1.08997 * 109.46813 * 299.99403 * 10 9 7 33 33 H 1.08999 * 113.66788 * 90.26632 * 14 13 11 34 34 H 1.09002 * 113.93561 * 318.92046 * 14 13 11 35 35 H 1.08998 * 113.74179 * 222.13975 * 15 14 13 36 36 H 1.09001 * 113.84048 * 90.83703 * 15 14 13 37 37 H 1.08993 * 109.47381 * 159.35005 * 18 16 13 38 38 H 1.09002 * 109.46813 * 39.34494 * 18 16 13 39 39 H 0.96994 * 119.99926 * 354.81380 * 19 18 16 40 40 H 1.09004 * 117.50136 * 214.97587 * 24 22 20 41 41 H 1.09001 * 117.50345 * 359.97438 * 24 22 20 42 42 H 0.96999 * 120.00268 * 0.02562 * 28 27 25 43 43 H 0.97004 * 120.00021 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8916 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7908 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 4.3131 -6.4775 0.0891 15 6 4.1303 -7.8228 -0.6365 16 6 2.6915 -7.8084 -0.0891 17 1 2.5846 -8.2992 0.8784 18 6 1.6403 -8.2580 -1.1059 19 7 0.3063 -8.1471 -0.5106 20 6 -0.7879 -8.3906 -1.2589 21 8 -0.6681 -8.7019 -2.4249 22 6 -2.1601 -8.2771 -0.6464 23 1 -2.2167 -8.4852 0.4221 24 6 -3.0982 -7.2071 -1.2084 25 6 -3.3552 -8.6857 -1.5100 26 1 -4.1982 -9.1622 -1.0095 27 6 -3.0701 -9.1703 -2.9081 28 7 -2.7555 -10.4632 -3.1221 29 8 -3.1235 -8.3968 -3.8407 30 1 -0.4849 0.8401 -0.0004 31 1 3.1243 -3.7315 0.8905 32 1 3.1242 -3.7316 -0.8895 33 1 4.6830 -6.5755 1.1098 34 1 4.8608 -5.7356 -0.4922 35 1 4.7456 -8.6266 -0.2323 36 1 4.1873 -7.7489 -1.7225 37 1 1.8274 -9.2940 -1.3879 38 1 1.6969 -7.6245 -1.9911 39 1 0.2105 -7.8985 0.4221 40 1 -3.7724 -6.7115 -0.5097 41 1 -2.7228 -6.5849 -2.0208 42 1 -2.7130 -11.0820 -2.3763 43 1 -2.5716 -10.7751 -4.0221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358641354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:44 Heat of formation + Delta-G solvation = -79.117623 kcal Electronic energy + Delta-G solvation = -27296.424753 eV Core-core repulsion = 23275.692468 eV Total energy + Delta-G solvation = -4020.732285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66719 -41.18018 -39.74974 -38.68032 -36.92807 -35.60094 -34.61382 -34.44704 -32.11471 -29.85287 -29.35123 -27.66990 -26.14667 -25.13966 -23.60864 -22.99873 -21.57812 -20.94533 -20.18671 -19.47287 -18.89998 -17.93556 -17.86602 -17.46993 -17.17843 -16.96050 -16.89331 -16.36151 -16.19346 -16.00806 -15.67008 -15.46535 -14.94606 -14.82728 -14.64466 -14.34148 -14.09593 -13.73589 -13.45751 -13.28937 -13.14718 -13.14017 -13.03310 -12.93481 -12.61021 -12.33070 -12.05039 -11.73202 -11.70688 -11.62521 -11.18425 -11.03046 -10.86951 -10.68784 -10.51133 -10.29960 -10.04740 -9.68202 -8.68482 -8.37582 -6.15178 1.21235 1.35530 1.38624 1.41520 1.53401 1.64202 1.74358 1.95974 2.17621 2.25119 2.64367 2.90297 2.96492 3.21732 3.44158 3.66156 3.68653 3.72520 3.75742 3.79278 4.03957 4.09200 4.21173 4.24689 4.31308 4.39484 4.44468 4.48572 4.69578 4.71192 4.79129 4.81430 5.00073 5.00416 5.06766 5.33584 5.38469 5.45855 5.99121 6.16704 6.51390 6.57223 6.63873 7.03713 7.17691 7.24333 7.49021 8.71757 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.003050 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.847621 B = 9176.966769 C =11211.656665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.079 0.921 9 S -0.144 6.144 10 C -0.120 4.120 11 C 0.548 3.452 12 O -0.547 6.547 13 N -0.651 5.651 14 C 0.096 3.904 15 C -0.121 4.121 16 C 0.123 3.877 17 H 0.128 0.872 18 C 0.122 3.878 19 N -0.699 5.699 20 C 0.527 3.473 21 O -0.573 6.573 22 C -0.158 4.158 23 H 0.172 0.828 24 C -0.135 4.135 25 C -0.149 4.149 26 H 0.184 0.816 27 C 0.555 3.445 28 N -0.827 5.827 29 O -0.604 6.604 30 H 0.271 0.729 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.032 0.968 39 H 0.410 0.590 40 H 0.141 0.859 41 H 0.061 0.939 42 H 0.414 0.586 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.032 -26.125 5.205 27.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.695 4.695 8 H 0.097 0.903 9 S 0.083 5.917 10 C -0.272 4.272 11 C 0.337 3.663 12 O -0.424 6.424 13 N -0.389 5.389 14 C -0.025 4.025 15 C -0.159 4.159 16 C 0.020 3.980 17 H 0.145 0.855 18 C -0.002 4.002 19 N -0.348 5.348 20 C 0.314 3.686 21 O -0.453 6.453 22 C -0.179 4.179 23 H 0.190 0.810 24 C -0.173 4.173 25 C -0.170 4.170 26 H 0.201 0.799 27 C 0.341 3.659 28 N -0.389 5.389 29 O -0.485 6.485 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.050 0.950 39 H 0.246 0.754 40 H 0.159 0.841 41 H 0.079 0.921 42 H 0.245 0.755 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 4.034 -25.774 3.935 26.383 hybrid contribution 1.556 1.516 0.031 2.173 sum 5.591 -24.258 3.966 25.208 Atomic orbital electron populations 1.70186 1.07926 1.28555 1.47951 1.26129 0.95991 1.03301 0.93726 0.84913 0.78574 0.76345 0.78164 1.18098 1.20070 1.19591 1.23214 0.95201 0.92187 1.58908 0.90285 1.85496 1.10277 0.98978 1.96972 1.23269 1.03362 0.95014 1.05524 1.19653 0.85729 0.85517 0.75436 1.90666 1.16280 1.85334 1.50133 1.50401 1.09543 1.05637 1.73308 1.23546 0.78787 0.97489 1.02652 1.23492 0.92732 0.98014 1.01668 1.23420 0.95857 0.79166 0.99545 0.85461 1.21540 0.81383 1.01658 0.95626 1.45630 1.05258 1.68900 1.15050 1.20088 0.86662 0.76063 0.85751 1.90702 1.87048 1.49910 1.17677 1.22447 0.87338 1.06417 1.01699 0.81028 1.22959 1.00983 0.90908 1.02447 1.22431 1.01133 0.99968 0.93499 0.79862 1.19755 0.73834 0.82507 0.89799 1.43385 1.72159 1.09628 1.13690 1.90694 1.54872 1.56399 1.46544 0.91972 0.88002 0.88982 0.86847 0.89710 0.85119 0.89114 0.88409 0.94975 0.75389 0.84058 0.92066 0.75543 0.76808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 44.29 29.55 68.60 2.03 46.31 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.55 -31.84 9.50 67.96 0.65 -31.20 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.14 -8.14 20.57 -56.49 -1.16 -9.30 16 10 C -0.12 -4.94 5.92 71.24 0.42 -4.52 16 11 C 0.55 20.07 7.95 87.66 0.70 20.77 16 12 O -0.55 -23.77 14.46 -3.04 -0.04 -23.82 16 13 N -0.65 -15.53 3.50 -810.68 -2.84 -18.37 16 14 C 0.10 1.30 8.63 86.44 0.75 2.04 16 15 C -0.12 -1.11 7.86 31.25 0.25 -0.87 16 16 C 0.12 1.92 4.26 45.10 0.19 2.12 16 17 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 18 C 0.12 2.70 5.33 86.38 0.46 3.16 16 19 N -0.70 -17.26 4.27 -463.05 -1.98 -19.24 16 20 C 0.53 15.25 7.58 87.66 0.66 15.91 16 21 O -0.57 -20.76 13.83 3.87 0.05 -20.71 16 22 C -0.16 -3.47 6.19 -11.54 -0.07 -3.54 16 23 H 0.17 2.26 8.14 -2.38 -0.02 2.24 16 24 C -0.13 -3.67 9.75 30.62 0.30 -3.37 16 25 C -0.15 -3.16 6.18 -11.51 -0.07 -3.24 16 26 H 0.18 2.03 8.14 -2.39 -0.02 2.01 16 27 C 0.55 15.98 5.11 87.66 0.45 16.43 16 28 N -0.83 -15.97 8.55 -173.54 -1.48 -17.46 16 29 O -0.60 -24.96 17.35 3.86 0.07 -24.89 16 30 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 31 H 0.10 3.79 8.14 -2.40 -0.02 3.77 16 32 H 0.09 3.61 8.14 -2.40 -0.02 3.59 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.09 1.01 8.10 -2.39 -0.02 0.99 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.03 0.99 8.13 -2.39 -0.02 0.97 16 39 H 0.41 9.20 7.95 -92.71 -0.74 8.46 16 40 H 0.14 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.06 2.32 7.92 -2.39 -0.02 2.31 16 42 H 0.41 4.69 8.83 -92.71 -0.82 3.88 16 43 H 0.40 7.55 8.93 -92.70 -0.83 6.72 16 Total: -1.00 -97.22 383.77 -1.24 -98.46 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: -1.31 Total: 30.38 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 5.14 Total: 14.93 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -6.01 Total: -111.36 kcal Atomic # 8 Polarization: -69.49 SS G_CDS: 0.08 Total: -69.42 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -97.22 -1.24 -98.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358641354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.341 kcal (2) G-P(sol) polarization free energy of solvation -97.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds