Wall clock time and date at job start Sat Apr 11 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38043 * 126.29848 * 2 1 4 4 C 1.47436 * 126.41157 * 359.97438 * 3 2 1 5 5 O 1.21604 * 119.99917 * 0.27669 * 4 3 2 6 6 N 1.34768 * 120.00042 * 180.27972 * 4 3 2 7 7 C 1.46504 * 120.00093 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47479 * 179.97438 * 7 6 4 9 9 H 1.09001 * 110.00871 * 54.30029 * 8 7 6 10 10 C 1.53884 * 110.02725 * 292.92519 * 8 7 6 11 11 C 1.54189 * 108.68737 * 193.56893 * 10 8 7 12 12 S 1.82918 * 105.11005 * 27.83583 * 11 10 8 13 13 O 1.42097 * 109.35457 * 244.51275 * 12 11 10 14 14 O 1.42109 * 109.47630 * 111.34597 * 12 11 10 15 15 C 1.55044 * 110.02810 * 175.68126 * 8 7 6 16 16 C 1.41284 * 107.17393 * 180.24672 * 3 2 1 17 17 N 1.30446 * 108.02583 * 359.77621 * 16 3 2 18 18 N 1.34265 * 126.29079 * 179.86342 * 2 1 3 19 19 C 1.46506 * 125.75271 * 0.02562 * 18 2 1 20 20 C 1.50697 * 109.46529 * 269.71113 * 19 18 2 21 21 H 1.08002 * 120.00599 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99675 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00210 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00019 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46845 * 269.99914 * 24 22 20 26 26 H 1.48503 * 109.47399 * 29.99403 * 24 22 20 27 27 H 1.48498 * 109.47295 * 150.00010 * 24 22 20 28 28 H 1.08997 * 109.47080 * 270.13550 * 1 2 3 29 29 H 1.08999 * 109.46741 * 30.13072 * 1 2 3 30 30 H 1.08990 * 109.47236 * 150.13250 * 1 2 3 31 31 H 0.97004 * 120.00181 * 359.97438 * 6 4 3 32 32 H 1.08997 * 109.47602 * 300.00254 * 7 6 4 33 33 H 1.09003 * 109.46818 * 59.99932 * 7 6 4 34 34 H 1.09001 * 109.64280 * 313.37928 * 10 8 7 35 35 H 1.08995 * 109.64426 * 73.67357 * 10 8 7 36 36 H 1.08996 * 110.28033 * 268.94052 * 11 10 8 37 37 H 1.09007 * 110.34302 * 146.75920 * 11 10 8 38 38 H 1.08995 * 110.78991 * 279.99135 * 15 8 7 39 39 H 1.09000 * 110.79006 * 43.45988 * 15 8 7 40 40 H 1.08009 * 125.98643 * 179.75726 * 16 3 2 41 41 H 1.08995 * 109.46912 * 149.71216 * 19 18 2 42 42 H 1.09007 * 109.46641 * 29.70848 * 19 18 2 43 43 H 0.96998 * 119.99640 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1125 0.0000 4 6 1.8860 2.5203 -0.0005 5 8 0.6997 2.7878 0.0041 6 7 2.8001 3.5106 -0.0062 7 6 2.3647 4.9094 -0.0073 8 6 3.5903 5.8251 -0.0133 9 1 4.2439 5.5680 -0.8469 10 6 4.3543 5.6919 1.3158 11 6 5.3648 6.8515 1.4232 12 16 4.6344 8.2128 0.4437 13 8 5.4699 8.4916 -0.6713 14 8 4.2413 9.2649 1.3143 15 6 3.1459 7.3064 -0.1242 16 6 3.6590 0.6497 -0.0058 17 7 3.6340 -0.6545 -0.0042 18 7 2.3017 -1.0822 0.0026 19 6 1.8500 -2.4759 0.0054 20 6 1.7015 -2.9528 1.4271 21 1 1.9211 -2.2846 2.2467 22 6 1.2842 -4.2420 1.6817 23 7 1.1550 -4.6585 2.9225 24 14 0.9036 -5.3977 0.2643 25 1 -0.5290 -5.2718 -0.1060 26 1 1.7496 -5.0438 -0.9038 27 1 1.1875 -6.7960 0.6757 28 1 -0.3633 0.0024 1.0276 29 1 -0.3633 0.8888 -0.5159 30 1 -0.3633 -0.8911 -0.5117 31 1 3.7463 3.2972 -0.0095 32 1 1.7625 5.1019 -0.8952 33 1 1.7696 5.1054 0.8847 34 1 3.6523 5.7398 2.1483 35 1 4.8841 4.7397 1.3401 36 1 6.3256 6.5556 1.0021 37 1 5.4840 7.1553 2.4633 38 1 2.9075 7.5625 -1.1565 39 1 2.2980 7.5060 0.5309 40 1 4.5449 1.2675 -0.0110 41 1 2.5823 -3.0962 -0.5113 42 1 0.8890 -2.5474 -0.5042 43 1 0.8618 -5.5656 3.1015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361633865.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:09 Heat of formation + Delta-G solvation = -41.025190 kcal Electronic energy + Delta-G solvation = -26811.275107 eV Core-core repulsion = 22792.194634 eV Total energy + Delta-G solvation = -4019.080473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.95549 -39.27446 -37.62699 -37.42395 -36.43303 -34.20848 -33.81743 -32.23290 -31.41545 -30.87349 -28.43134 -27.25406 -26.42773 -24.52553 -23.09053 -22.12307 -21.22235 -19.99031 -19.26916 -19.10211 -17.43071 -17.39142 -17.27082 -16.85874 -16.12936 -15.67175 -15.42264 -15.23696 -14.86284 -14.84353 -14.48153 -14.20780 -13.95648 -13.93339 -13.34645 -13.05670 -12.77192 -12.67429 -12.60615 -12.57172 -12.47861 -12.37859 -12.32806 -12.14170 -11.98065 -11.66909 -11.44781 -11.27312 -11.14852 -10.88517 -10.80513 -10.45691 -10.31155 -9.84533 -9.56068 -9.14191 -8.89309 -8.72816 -8.04972 -6.37319 -4.42298 -0.43865 2.03070 2.04071 2.64795 2.91081 3.06233 3.10467 3.14497 3.18827 3.35755 3.52418 3.76847 3.80454 3.99781 4.07568 4.11592 4.28766 4.33565 4.62603 4.83977 4.85990 4.98064 5.01560 5.10439 5.16027 5.25236 5.33773 5.37913 5.49207 5.55905 5.63898 5.78246 5.98032 6.19819 6.33776 6.38641 6.47973 6.53033 6.93672 7.13432 7.48454 7.56854 8.14887 8.20019 8.45876 8.65408 9.16412 10.74832 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030639 B = 0.001959 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.635627 B =14292.473888 C =14528.593095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.169 3.831 3 C -0.331 4.331 4 C 0.605 3.395 5 O -0.553 6.553 6 N -0.738 5.738 7 C 0.138 3.862 8 C -0.103 4.103 9 H 0.104 0.896 10 C -0.115 4.115 11 C -0.591 4.591 12 S 2.388 3.612 13 O -0.937 6.937 14 O -0.939 6.939 15 C -0.583 4.583 16 C 0.060 3.940 17 N -0.292 5.292 18 N -0.313 5.313 19 C 0.224 3.776 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.882 5.882 24 Si 0.873 3.127 25 H -0.270 1.270 26 H -0.263 1.263 27 H -0.278 1.278 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.177 0.823 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 21.681 -6.405 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.033 3.967 3 C -0.347 4.347 4 C 0.396 3.604 5 O -0.432 6.432 6 N -0.391 5.391 7 C 0.014 3.986 8 C -0.123 4.123 9 H 0.122 0.878 10 C -0.154 4.154 11 C -0.721 4.721 12 S 2.572 3.428 13 O -0.934 6.934 14 O -0.936 6.936 15 C -0.712 4.712 16 C -0.127 4.127 17 N -0.111 5.111 18 N -0.089 5.089 19 C 0.106 3.894 20 C -0.584 4.584 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.518 5.518 24 Si 0.698 3.302 25 H -0.195 1.195 26 H -0.188 1.188 27 H -0.203 1.203 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.194 0.806 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.495 21.397 -6.441 23.011 hybrid contribution -0.286 -0.968 -0.296 1.052 sum 5.209 20.428 -6.737 22.132 Atomic orbital electron populations 1.20598 0.86686 1.03692 1.04275 1.21487 0.94985 0.86417 0.93843 1.19641 0.93094 0.92493 1.29433 1.17263 0.84962 0.83841 0.74376 1.90710 1.16675 1.84423 1.51367 1.45703 1.09893 1.05269 1.78208 1.21162 0.94413 0.79730 1.03341 1.22117 0.98396 0.92464 0.99290 0.87765 1.22066 0.96713 0.98786 0.97808 1.30503 1.10214 1.15737 1.15627 1.09091 0.78856 0.77907 0.76942 1.93633 1.65106 1.83787 1.50912 1.93628 1.82347 1.51493 1.66161 1.30686 1.19787 1.07338 1.13428 1.23729 0.96347 0.92569 1.00062 1.77152 0.98112 1.12401 1.23454 1.48915 1.02736 1.07574 1.49691 1.20168 0.95736 0.73270 1.00267 1.21071 1.48156 0.99219 0.89933 0.90043 1.24796 0.94282 0.97421 0.95881 1.69861 1.45098 1.18287 1.18600 0.86903 0.79535 0.81069 0.82651 1.19486 1.18794 1.20333 0.89430 0.88661 0.91087 0.76716 0.90681 0.90777 0.89036 0.88430 0.84361 0.84211 0.83950 0.83857 0.80607 0.92702 0.93392 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.58 9.56 36.00 0.34 -1.24 16 2 C 0.17 3.21 7.01 -81.60 -0.57 2.64 16 3 C -0.33 -5.48 6.13 -105.07 -0.64 -6.12 16 4 C 0.61 8.78 7.81 -12.52 -0.10 8.68 16 5 O -0.55 -9.51 14.84 5.27 0.08 -9.44 16 6 N -0.74 -6.96 5.38 -61.38 -0.33 -7.29 16 7 C 0.14 1.00 5.09 -4.04 -0.02 0.98 16 8 C -0.10 -0.42 2.63 -89.08 -0.23 -0.66 16 9 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 10 C -0.12 -0.41 5.51 -25.65 -0.14 -0.55 16 11 C -0.59 -1.88 7.26 37.78 0.27 -1.61 16 12 S 2.39 13.08 6.10 -107.50 -0.66 12.42 16 13 O -0.94 -8.67 18.15 -57.73 -1.05 -9.72 16 14 O -0.94 -8.87 18.15 -57.73 -1.05 -9.92 16 15 C -0.58 -2.06 6.67 38.24 0.26 -1.81 16 16 C 0.06 0.94 11.50 -16.98 -0.20 0.75 16 17 N -0.29 -5.84 12.50 30.86 0.39 -5.45 16 18 N -0.31 -6.61 3.56 -57.77 -0.21 -6.82 16 19 C 0.22 5.06 5.04 -5.19 -0.03 5.04 16 20 C -0.55 -14.60 9.94 -34.44 -0.34 -14.94 16 21 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 22 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 23 N -0.88 -25.39 13.96 55.43 0.77 -24.62 16 24 Si 0.87 19.36 27.47 -169.99 -4.67 14.69 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 26 H -0.26 -5.55 6.54 56.52 0.37 -5.19 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.09 1.51 6.51 -51.93 -0.34 1.17 16 30 H 0.07 1.12 7.05 -51.93 -0.37 0.75 16 31 H 0.40 2.71 6.95 -40.82 -0.28 2.43 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.09 0.31 8.05 -51.93 -0.42 -0.10 16 35 H 0.10 0.29 7.75 -51.93 -0.40 -0.11 16 36 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.14 0.37 8.10 -51.93 -0.42 -0.05 16 40 H 0.18 1.82 7.50 -52.48 -0.39 1.43 16 41 H 0.06 1.24 7.20 -51.93 -0.37 0.87 16 42 H 0.05 1.00 6.43 -51.93 -0.33 0.66 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -38.19 369.35 -8.53 -46.72 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.88 Total: 0.61 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.50 Total: -6.76 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.62 Total: -44.18 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -2.02 Total: -29.08 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.67 Total: 14.69 kcal Atomic # 16 Polarization: 13.08 SS G_CDS: -0.66 Total: 12.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.19 -8.53 -46.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361633865.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.696 kcal (2) G-P(sol) polarization free energy of solvation -38.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds