Wall clock time and date at job start Sat Apr 11 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38043 * 126.29848 * 2 1 4 4 C 1.47436 * 126.41157 * 359.97438 * 3 2 1 5 5 O 1.21604 * 119.99917 * 0.27669 * 4 3 2 6 6 N 1.34768 * 120.00042 * 180.27972 * 4 3 2 7 7 C 1.46504 * 120.00093 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47479 * 179.97438 * 7 6 4 9 9 H 1.09001 * 110.00871 * 54.30029 * 8 7 6 10 10 C 1.53884 * 110.02725 * 292.92519 * 8 7 6 11 11 C 1.54189 * 108.68737 * 193.56893 * 10 8 7 12 12 S 1.82918 * 105.11005 * 27.83583 * 11 10 8 13 13 O 1.42097 * 109.35457 * 244.51275 * 12 11 10 14 14 O 1.42109 * 109.47630 * 111.34597 * 12 11 10 15 15 C 1.55044 * 110.02810 * 175.68126 * 8 7 6 16 16 C 1.41284 * 107.17393 * 180.24672 * 3 2 1 17 17 N 1.30446 * 108.02583 * 359.77621 * 16 3 2 18 18 N 1.34265 * 126.29079 * 179.86342 * 2 1 3 19 19 C 1.46506 * 125.75271 * 0.02562 * 18 2 1 20 20 C 1.50697 * 109.46529 * 269.71113 * 19 18 2 21 21 H 1.08002 * 120.00599 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99675 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00210 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00019 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46845 * 269.99914 * 24 22 20 26 26 H 1.48503 * 109.47399 * 29.99403 * 24 22 20 27 27 H 1.48498 * 109.47295 * 150.00010 * 24 22 20 28 28 H 1.08997 * 109.47080 * 270.13550 * 1 2 3 29 29 H 1.08999 * 109.46741 * 30.13072 * 1 2 3 30 30 H 1.08990 * 109.47236 * 150.13250 * 1 2 3 31 31 H 0.97004 * 120.00181 * 359.97438 * 6 4 3 32 32 H 1.08997 * 109.47602 * 300.00254 * 7 6 4 33 33 H 1.09003 * 109.46818 * 59.99932 * 7 6 4 34 34 H 1.09001 * 109.64280 * 313.37928 * 10 8 7 35 35 H 1.08995 * 109.64426 * 73.67357 * 10 8 7 36 36 H 1.08996 * 110.28033 * 268.94052 * 11 10 8 37 37 H 1.09007 * 110.34302 * 146.75920 * 11 10 8 38 38 H 1.08995 * 110.78991 * 279.99135 * 15 8 7 39 39 H 1.09000 * 110.79006 * 43.45988 * 15 8 7 40 40 H 1.08009 * 125.98643 * 179.75726 * 16 3 2 41 41 H 1.08995 * 109.46912 * 149.71216 * 19 18 2 42 42 H 1.09007 * 109.46641 * 29.70848 * 19 18 2 43 43 H 0.96998 * 119.99640 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1125 0.0000 4 6 1.8860 2.5203 -0.0005 5 8 0.6997 2.7878 0.0041 6 7 2.8001 3.5106 -0.0062 7 6 2.3647 4.9094 -0.0073 8 6 3.5903 5.8251 -0.0133 9 1 4.2439 5.5680 -0.8469 10 6 4.3543 5.6919 1.3158 11 6 5.3648 6.8515 1.4232 12 16 4.6344 8.2128 0.4437 13 8 5.4699 8.4916 -0.6713 14 8 4.2413 9.2649 1.3143 15 6 3.1459 7.3064 -0.1242 16 6 3.6590 0.6497 -0.0058 17 7 3.6340 -0.6545 -0.0042 18 7 2.3017 -1.0822 0.0026 19 6 1.8500 -2.4759 0.0054 20 6 1.7015 -2.9528 1.4271 21 1 1.9211 -2.2846 2.2467 22 6 1.2842 -4.2420 1.6817 23 7 1.1550 -4.6585 2.9225 24 14 0.9036 -5.3977 0.2643 25 1 -0.5290 -5.2718 -0.1060 26 1 1.7496 -5.0438 -0.9038 27 1 1.1875 -6.7960 0.6757 28 1 -0.3633 0.0024 1.0276 29 1 -0.3633 0.8888 -0.5159 30 1 -0.3633 -0.8911 -0.5117 31 1 3.7463 3.2972 -0.0095 32 1 1.7625 5.1019 -0.8952 33 1 1.7696 5.1054 0.8847 34 1 3.6523 5.7398 2.1483 35 1 4.8841 4.7397 1.3401 36 1 6.3256 6.5556 1.0021 37 1 5.4840 7.1553 2.4633 38 1 2.9075 7.5625 -1.1565 39 1 2.2980 7.5060 0.5309 40 1 4.5449 1.2675 -0.0110 41 1 2.5823 -3.0962 -0.5113 42 1 0.8890 -2.5474 -0.5042 43 1 0.8618 -5.5656 3.1015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361633865.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:08 Heat of formation + Delta-G solvation = -72.275235 kcal Electronic energy + Delta-G solvation = -26812.630211 eV Core-core repulsion = 22792.194634 eV Total energy + Delta-G solvation = -4020.435577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.31267 -40.24802 -38.24398 -37.99493 -36.99842 -35.77332 -34.91476 -33.90039 -32.83023 -31.35487 -29.82028 -28.53438 -27.35668 -25.16795 -24.65603 -23.29696 -21.66809 -21.22925 -20.44187 -19.73339 -19.28160 -18.50028 -17.82835 -17.54775 -16.78228 -16.67393 -16.49751 -16.40559 -16.14715 -15.68790 -15.32561 -15.25056 -14.93573 -14.75415 -14.49314 -14.31720 -14.10836 -13.80113 -13.69561 -13.67178 -13.19317 -13.13037 -13.07213 -13.00916 -12.96530 -12.73819 -12.56099 -12.43311 -12.14816 -11.85111 -11.74092 -11.73086 -11.60278 -11.19983 -10.91680 -10.76992 -10.25155 -10.05213 -9.40146 -8.42993 -6.54761 -0.84291 0.68467 1.34243 1.34879 1.36287 1.45311 1.61665 1.68534 2.24615 2.36439 2.58467 2.75416 2.89581 3.10875 3.40108 3.64774 3.70688 3.73960 3.77854 4.00093 4.07788 4.14812 4.22586 4.28574 4.40924 4.49256 4.57430 4.70830 4.73183 4.76263 4.85704 4.89140 4.95107 5.05653 5.11601 5.17458 5.18419 5.21383 5.55792 5.67360 5.84439 6.21490 6.48200 6.66606 6.83728 7.09139 7.41167 8.73333 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030639 B = 0.001959 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.635627 B =14292.473888 C =14528.593095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.144 3.856 3 C -0.330 4.330 4 C 0.605 3.395 5 O -0.584 6.584 6 N -0.715 5.715 7 C 0.135 3.865 8 C -0.097 4.097 9 H 0.124 0.876 10 C -0.122 4.122 11 C -0.570 4.570 12 S 2.388 3.612 13 O -0.981 6.981 14 O -0.987 6.987 15 C -0.569 4.569 16 C 0.082 3.918 17 N -0.336 5.336 18 N -0.339 5.339 19 C 0.233 3.767 20 C -0.552 4.552 21 H 0.026 0.974 22 C 0.022 3.978 23 N -0.935 5.935 24 Si 0.948 3.052 25 H -0.253 1.253 26 H -0.242 1.242 27 H -0.278 1.278 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.414 0.586 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.231 0.769 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 22.104 -8.207 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.009 3.991 3 C -0.345 4.345 4 C 0.394 3.606 5 O -0.465 6.465 6 N -0.368 5.368 7 C 0.011 3.989 8 C -0.117 4.117 9 H 0.142 0.858 10 C -0.160 4.160 11 C -0.702 4.702 12 S 2.578 3.422 13 O -0.978 6.978 14 O -0.984 6.984 15 C -0.701 4.701 16 C -0.105 4.105 17 N -0.155 5.155 18 N -0.116 5.116 19 C 0.113 3.887 20 C -0.590 4.590 21 H 0.045 0.955 22 C -0.178 4.178 23 N -0.573 5.573 24 Si 0.769 3.231 25 H -0.177 1.177 26 H -0.166 1.166 27 H -0.203 1.203 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.252 0.748 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.173 0.827 37 H 0.169 0.831 38 H 0.174 0.826 39 H 0.173 0.827 40 H 0.247 0.753 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.241 21.914 -8.258 24.236 hybrid contribution -0.458 -0.960 0.367 1.126 sum 5.782 20.954 -7.891 23.125 Atomic orbital electron populations 1.20583 0.85891 1.04488 1.03749 1.22005 0.95957 0.86845 0.94276 1.20002 0.93262 0.93254 1.27966 1.17070 0.85105 0.83819 0.74630 1.90699 1.18114 1.84706 1.52989 1.45513 1.10015 1.05312 1.75914 1.21313 0.95839 0.78613 1.03178 1.22116 0.97413 0.91652 1.00551 0.85833 1.22183 0.96921 0.99385 0.97513 1.30341 1.10654 1.13588 1.15608 1.08808 0.79023 0.78287 0.76095 1.93574 1.66576 1.85097 1.52556 1.93565 1.83181 1.54645 1.67051 1.30583 1.18641 1.06344 1.14520 1.24565 0.97724 0.91538 0.96703 1.77093 0.97944 1.14709 1.25748 1.48747 1.03579 1.07252 1.52047 1.19874 0.96745 0.74703 0.97333 1.21177 1.48024 0.98794 0.90962 0.95513 1.25818 0.93718 0.99276 0.98973 1.70023 1.46707 1.19086 1.21472 0.85712 0.80416 0.77831 0.79104 1.17702 1.16554 1.20345 0.90552 0.87738 0.90348 0.74837 0.90919 0.91062 0.88730 0.86960 0.82687 0.83079 0.82605 0.82697 0.75293 0.92624 0.91267 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.98 9.56 71.23 0.68 -2.30 16 2 C 0.14 5.42 7.01 42.14 0.30 5.71 16 3 C -0.33 -10.34 6.13 -20.15 -0.12 -10.46 16 4 C 0.60 16.19 7.81 86.67 0.68 16.86 16 5 O -0.58 -19.27 14.84 -4.04 -0.06 -19.33 16 6 N -0.71 -10.98 5.38 -466.36 -2.51 -13.49 16 7 C 0.13 1.52 5.09 86.38 0.44 1.96 16 8 C -0.10 -0.45 2.63 -9.80 -0.03 -0.47 16 9 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 10 C -0.12 -0.40 5.51 31.30 0.17 -0.23 16 11 C -0.57 -1.92 7.26 72.38 0.53 -1.40 16 12 S 2.39 23.31 6.10 -56.49 -0.34 22.96 16 13 O -0.98 -17.54 18.15 -127.47 -2.31 -19.85 16 14 O -0.99 -18.60 18.15 -127.47 -2.31 -20.91 16 15 C -0.57 -2.60 6.67 72.68 0.48 -2.12 16 16 C 0.08 2.34 11.50 85.65 0.99 3.33 16 17 N -0.34 -13.12 12.50 -56.27 -0.70 -13.82 16 18 N -0.34 -14.32 3.56 -336.69 -1.20 -15.52 16 19 C 0.23 10.51 5.04 85.63 0.43 10.94 16 20 C -0.55 -30.45 9.94 25.60 0.25 -30.19 16 21 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 22 C 0.02 1.22 5.47 84.65 0.46 1.68 16 23 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 24 Si 0.95 39.54 27.47 68.60 1.88 41.42 16 25 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 27 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 28 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.10 3.26 6.51 -2.39 -0.02 3.24 16 30 H 0.08 2.43 7.05 -2.39 -0.02 2.42 16 31 H 0.41 3.69 6.95 -92.71 -0.64 3.04 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 34 H 0.09 0.32 8.05 -2.39 -0.02 0.30 16 35 H 0.11 0.13 7.75 -2.39 -0.02 0.11 16 36 H 0.16 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.15 0.29 8.14 -2.38 -0.02 0.27 16 38 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.15 0.42 8.10 -2.39 -0.02 0.40 16 40 H 0.23 3.62 7.50 -2.91 -0.02 3.60 16 41 H 0.06 2.47 7.20 -2.39 -0.02 2.46 16 42 H 0.07 2.79 6.43 -2.38 -0.02 2.77 16 43 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -87.75 369.35 -1.65 -89.40 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.35 Total: 11.10 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 5.26 Total: -6.69 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -4.11 Total: -98.10 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -4.69 Total: -60.09 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 1.88 Total: 41.42 kcal Atomic # 16 Polarization: 23.31 SS G_CDS: -0.34 Total: 22.96 kcal Total: -87.75 -1.65 -89.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361633865.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.128 kcal (2) G-P(sol) polarization free energy of solvation -87.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds