Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38134 * 120.03739 * 2 1 4 4 C 1.38263 * 120.07218 * 180.27031 * 3 2 1 5 5 C 1.38300 * 120.13801 * 359.77445 * 4 3 2 6 6 S 1.76197 * 119.96436 * 179.97438 * 5 4 3 7 7 N 1.65596 * 107.21811 * 269.97291 * 6 5 4 8 8 O 1.42102 * 106.40173 * 23.51403 * 6 5 4 9 9 O 1.42109 * 106.40611 * 156.43367 * 6 5 4 10 10 C 1.38094 * 120.07452 * 359.97092 * 5 4 3 11 11 C 1.38848 * 120.03355 * 179.76623 * 2 1 3 12 12 N 1.39925 * 120.07050 * 359.97438 * 11 2 1 13 13 C 1.34778 * 119.99706 * 154.88817 * 12 11 2 14 14 O 1.21286 * 120.00511 * 354.47965 * 13 12 11 15 15 C 1.50699 * 120.00031 * 174.47897 * 13 12 11 16 16 N 1.46896 * 109.47584 * 179.97438 * 15 13 12 17 17 C 1.46902 * 111.00450 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.46313 * 35.00375 * 17 16 15 19 19 C 1.52996 * 109.47145 * 275.00432 * 17 16 15 20 20 C 1.50694 * 109.47158 * 155.00158 * 17 16 15 21 21 H 1.07999 * 120.00079 * 0.02562 * 20 17 16 22 22 C 1.37875 * 120.00220 * 180.02562 * 20 17 16 23 23 N 1.31520 * 119.99554 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 120.00483 * 179.97438 * 22 20 17 25 25 H 1.48496 * 109.46883 * 89.99754 * 24 22 20 26 26 H 1.48497 * 109.47268 * 210.00124 * 24 22 20 27 27 H 1.48501 * 109.46826 * 329.99938 * 24 22 20 28 28 H 1.08996 * 109.47556 * 270.23687 * 1 2 3 29 29 H 1.09004 * 109.47217 * 30.23334 * 1 2 3 30 30 H 1.09004 * 109.47100 * 150.23280 * 1 2 3 31 31 H 1.08002 * 119.96561 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.93056 * 179.74531 * 4 3 2 33 33 H 0.96994 * 120.00373 * 0.02562 * 7 6 5 34 34 H 0.97004 * 120.00218 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.03769 * 180.02562 * 10 5 4 36 36 H 0.96990 * 120.00005 * 334.88820 * 12 11 2 37 37 H 1.09009 * 109.47221 * 300.00355 * 15 13 12 38 38 H 1.09002 * 109.47216 * 59.99761 * 15 13 12 39 39 H 1.00901 * 111.00072 * 303.95917 * 16 15 13 40 40 H 1.09000 * 109.47468 * 299.99236 * 19 17 16 41 41 H 1.08996 * 109.47309 * 59.99661 * 19 17 16 42 42 H 1.09004 * 109.46787 * 180.02562 * 19 17 16 43 43 H 0.97003 * 119.99303 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1967 -0.0056 5 6 4.2762 0.0011 -0.0066 6 16 6.0381 0.0075 -0.0145 7 7 6.5212 0.0057 -1.5984 8 8 6.4372 1.2599 0.5254 9 8 6.4465 -1.2396 0.5310 10 6 3.5909 -1.1978 -0.0013 11 6 2.2019 -1.2020 0.0049 12 7 1.5045 -2.4151 0.0104 13 6 2.0847 -3.5282 -0.4804 14 8 3.1701 -3.4600 -1.0174 15 6 1.3849 -4.8576 -0.3620 16 7 2.2170 -5.9048 -0.9693 17 6 1.5653 -7.2178 -0.8717 18 1 0.4868 -7.0963 -0.9727 19 6 1.8828 -7.8450 0.4872 20 6 2.0749 -8.1145 -1.9703 21 1 2.8098 -7.7461 -2.6707 22 6 1.6031 -9.4052 -2.0813 23 7 0.7086 -9.8540 -1.2280 24 14 2.2344 -10.5166 -3.4436 25 1 3.4279 -11.2585 -2.9639 26 1 1.1728 -11.4816 -3.8270 27 1 2.6042 -9.6931 -4.6227 28 1 -0.3634 0.0042 1.0276 29 1 -0.3634 0.8879 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6585 2.1312 0.0004 32 1 4.1193 2.1329 -0.0098 33 1 5.8593 0.0020 -2.3074 34 1 7.4662 0.0090 -1.8173 35 1 4.1343 -2.1312 -0.0016 36 1 0.6036 -2.4549 0.3674 37 1 1.2197 -5.0888 0.6903 38 1 0.4262 -4.8107 -0.8785 39 1 2.4378 -5.6807 -1.9280 40 1 2.9613 -7.9664 0.5883 41 1 1.5142 -7.1964 1.2818 42 1 1.3996 -8.8194 0.5594 43 1 0.3769 -10.7622 -1.3059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364742035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = -77.690660 kcal Electronic energy + Delta-G solvation = -27194.290534 eV Core-core repulsion = 23173.620126 eV Total energy + Delta-G solvation = -4020.670407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88259 -38.83987 -37.24043 -35.94070 -35.79475 -35.04799 -33.37163 -33.10497 -32.60919 -30.50554 -29.01526 -27.66928 -25.84024 -24.95712 -23.24567 -22.20908 -20.53939 -19.91203 -19.73947 -18.85931 -17.56277 -17.46154 -16.76512 -16.44175 -16.21425 -15.96329 -15.61031 -15.12724 -15.06320 -14.64535 -14.33889 -14.18607 -14.00397 -13.42210 -13.31692 -12.94483 -12.74553 -12.56015 -12.43095 -12.28728 -12.20264 -12.10803 -11.95840 -11.85601 -11.34211 -11.19268 -10.97330 -10.78686 -10.70778 -10.66047 -10.42389 -10.20338 -10.11901 -9.66698 -9.40424 -8.90680 -8.52869 -8.36285 -7.41655 -6.08360 -4.14552 0.19370 0.50491 0.98931 2.53216 2.83499 2.93667 3.22609 3.28504 3.34847 3.38445 3.56534 4.24364 4.37069 4.40910 4.49946 4.74359 4.79751 4.96243 5.07923 5.12774 5.19052 5.26428 5.33879 5.48322 5.53528 5.68668 5.72245 5.74620 5.79682 5.88204 5.99627 6.08566 6.65277 6.76059 6.81843 7.03840 7.09508 7.19998 7.39102 7.73113 7.80133 8.09723 8.19614 8.26669 8.55366 8.94657 9.51742 10.98139 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.002572 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.806636 B =10884.302828 C =12158.427142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.121 4.121 4 C -0.042 4.042 5 C -0.660 4.660 6 S 2.703 3.297 7 N -1.249 6.249 8 O -0.969 6.969 9 O -0.956 6.956 10 C -0.028 4.028 11 C 0.139 3.861 12 N -0.678 5.678 13 C 0.511 3.489 14 O -0.498 6.498 15 C 0.046 3.954 16 N -0.672 5.672 17 C 0.213 3.787 18 H 0.003 0.997 19 C -0.127 4.127 20 C -0.519 4.519 21 H 0.062 0.938 22 C 0.062 3.938 23 N -0.891 5.891 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.417 0.583 34 H 0.419 0.581 35 H 0.169 0.831 36 H 0.412 0.588 37 H 0.100 0.900 38 H 0.054 0.946 39 H 0.342 0.658 40 H 0.034 0.966 41 H 0.003 0.997 42 H 0.083 0.917 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 24.612 1.639 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.063 4.063 5 C -0.748 4.748 6 S 2.792 3.208 7 N -0.924 5.924 8 O -0.958 6.958 9 O -0.945 6.945 10 C -0.050 4.050 11 C 0.042 3.958 12 N -0.324 5.324 13 C 0.300 3.700 14 O -0.370 6.370 15 C -0.087 4.087 16 N -0.305 5.305 17 C 0.106 3.894 18 H 0.021 0.979 19 C -0.185 4.185 20 C -0.558 4.558 21 H 0.080 0.920 22 C -0.139 4.139 23 N -0.529 5.529 24 Si 0.727 3.273 25 H -0.205 1.205 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.244 0.756 34 H 0.250 0.750 35 H 0.186 0.814 36 H 0.249 0.751 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.161 0.839 40 H 0.054 0.946 41 H 0.022 0.978 42 H 0.101 0.899 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.363 24.257 2.794 24.455 hybrid contribution -1.563 -0.560 -1.806 2.453 sum -0.200 23.697 0.988 23.718 Atomic orbital electron populations 1.20884 0.90281 1.03810 1.03106 1.19995 0.96532 0.91884 0.98357 1.20940 0.93950 0.97250 1.01936 1.20863 0.94693 0.96441 0.94258 1.30450 1.25722 0.99099 1.19562 1.01490 0.72964 0.73990 0.72361 1.53002 1.17354 1.95359 1.26643 1.93589 1.80897 1.44501 1.76801 1.93647 1.80330 1.44192 1.76377 1.21335 0.93273 0.98365 0.92013 1.17694 0.91466 0.85425 1.01190 1.43783 1.19261 1.06856 1.62494 1.21476 0.86403 0.85574 0.76552 1.90652 1.20452 1.85618 1.40274 1.21833 0.95215 0.88681 1.03006 1.60532 1.44386 1.01603 1.24011 1.19164 0.92039 0.83278 0.94878 0.97949 1.21750 1.00031 1.01476 0.95251 1.21240 1.24423 0.97468 1.12660 0.91979 1.24910 0.94847 0.97881 0.96310 1.69893 1.29831 1.17092 1.36129 0.86478 0.78480 0.80318 0.82021 1.20516 1.21288 1.19875 0.90168 0.90404 0.91019 0.84670 0.84059 0.75570 0.75050 0.81368 0.75097 0.88243 0.92877 0.83932 0.94650 0.97761 0.89885 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.45 36.00 0.34 -0.38 16 2 C -0.06 -0.58 5.90 -104.44 -0.62 -1.19 16 3 C -0.12 -0.99 9.70 -39.61 -0.38 -1.37 16 4 C -0.04 -0.39 9.52 -39.55 -0.38 -0.77 16 5 C -0.66 -7.42 5.94 -39.61 -0.24 -7.65 16 6 S 2.70 30.15 6.28 -107.50 -0.68 29.47 16 7 N -1.25 -9.42 9.55 60.35 0.58 -8.85 16 8 O -0.97 -12.51 17.28 -57.17 -0.99 -13.50 16 9 O -0.96 -14.81 17.28 -57.17 -0.99 -15.79 16 10 C -0.03 -0.38 8.19 -39.39 -0.32 -0.71 16 11 C 0.14 1.64 6.41 -83.69 -0.54 1.10 16 12 N -0.68 -7.65 4.97 -9.86 -0.05 -7.70 16 13 C 0.51 7.77 7.67 -10.99 -0.08 7.69 16 14 O -0.50 -9.23 13.37 5.55 0.07 -9.15 16 15 C 0.05 0.74 5.97 -4.98 -0.03 0.71 16 16 N -0.67 -14.27 5.92 -109.22 -0.65 -14.92 16 17 C 0.21 5.24 2.60 -68.87 -0.18 5.06 16 18 H 0.00 0.08 7.80 -51.93 -0.40 -0.33 16 19 C -0.13 -3.08 9.19 37.16 0.34 -2.74 16 20 C -0.52 -14.10 8.59 -34.44 -0.30 -14.40 16 21 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 23 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 24 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.07 0.41 6.99 -51.93 -0.36 0.04 16 31 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.14 1.03 7.61 -52.49 -0.40 0.63 16 33 H 0.42 2.39 8.92 -34.47 -0.31 2.08 16 34 H 0.42 2.41 8.96 -34.47 -0.31 2.10 16 35 H 0.17 2.72 5.35 -52.48 -0.28 2.44 16 36 H 0.41 3.24 7.42 -40.82 -0.30 2.94 16 37 H 0.10 1.51 7.44 -51.92 -0.39 1.13 16 38 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 39 H 0.34 7.40 7.93 -39.29 -0.31 7.09 16 40 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 42 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -36.52 369.60 -9.40 -45.92 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.41 Total: 10.17 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -2.47 Total: -13.05 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.51 Total: -55.74 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.90 Total: -38.45 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 30.15 SS G_CDS: -0.68 Total: 29.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.52 -9.40 -45.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364742035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.772 kcal (2) G-P(sol) polarization free energy of solvation -36.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds