Wall clock time and date at job start Sat Apr 11 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38471 * 120.82284 * 2 1 4 4 C 1.39290 * 119.19428 * 180.24157 * 3 2 1 5 5 C 1.48281 * 119.57699 * 179.77382 * 4 3 2 6 6 O 1.21506 * 119.99705 * 359.72728 * 5 4 3 7 7 N 1.34774 * 120.00174 * 179.73249 * 5 4 3 8 8 C 1.39814 * 120.00249 * 183.37287 * 7 5 4 9 9 C 1.38997 * 120.03460 * 324.27140 * 8 7 5 10 10 C 1.38144 * 120.06296 * 179.72182 * 9 8 7 11 11 C 1.38174 * 120.13895 * 0.55277 * 10 9 8 12 12 C 1.38915 * 120.08176 * 359.72581 * 11 10 9 13 13 O 1.35749 * 120.03405 * 179.97438 * 12 11 10 14 14 C 1.34834 * 116.99776 * 186.34481 * 13 12 11 15 15 H 1.08003 * 119.99910 * 354.85146 * 14 13 12 16 16 C 1.38650 * 119.99635 * 174.85778 * 14 13 12 17 17 N 1.31564 * 119.99365 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00545 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47181 * 89.99809 * 18 16 14 20 20 H 1.48497 * 109.47315 * 210.00306 * 18 16 14 21 21 H 1.48509 * 109.46849 * 330.00606 * 18 16 14 22 22 C 1.38739 * 120.04222 * 144.54903 * 8 7 5 23 23 N 1.32767 * 120.85122 * 359.50125 * 4 3 2 24 24 C 1.31389 * 121.79509 * 0.24783 * 23 4 3 25 25 C 1.39767 * 120.72295 * 0.02562 * 24 23 4 26 26 C 1.47991 * 120.46233 * 180.02562 * 25 24 23 27 27 N 1.34783 * 120.00158 * 2.47042 * 26 25 24 28 28 O 1.21536 * 120.00320 * 182.46862 * 26 25 24 29 29 H 1.08995 * 109.46986 * 262.54255 * 1 2 3 30 30 H 1.09000 * 109.47219 * 22.53954 * 1 2 3 31 31 H 1.08997 * 109.47478 * 142.54022 * 1 2 3 32 32 H 1.08000 * 120.40489 * 359.97438 * 3 2 1 33 33 H 0.96997 * 120.00265 * 3.64049 * 7 5 4 34 34 H 1.08000 * 119.96856 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.93159 * 180.28194 * 10 9 8 36 36 H 1.08009 * 119.96111 * 179.74169 * 11 10 9 37 37 H 0.97000 * 119.99552 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.06991 * 359.97438 * 22 8 7 39 39 H 1.07999 * 119.63503 * 179.97438 * 24 23 4 40 40 H 0.97003 * 119.99704 * 359.97438 * 27 26 25 41 41 H 0.96994 * 119.99883 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1891 0.0000 4 6 3.6088 1.1495 -0.0051 5 6 4.3771 2.4178 -0.0103 6 8 3.7918 3.4826 -0.0150 7 7 5.7245 2.3895 -0.0098 8 6 6.4489 3.5836 0.0566 9 6 5.9748 4.7215 -0.5856 10 6 6.6871 5.9031 -0.5156 11 6 7.8781 5.9548 0.1830 12 6 8.3603 4.8196 0.8222 13 8 9.5308 4.8714 1.5078 14 6 10.0081 3.7074 1.9929 15 1 9.4234 2.8040 1.9012 16 6 11.2494 3.6704 2.6094 17 7 11.7153 2.5344 3.0822 18 14 12.2609 5.2328 2.7675 19 1 11.9239 5.9136 4.0434 20 1 13.7058 4.8904 2.7556 21 1 11.9568 6.1365 1.6289 22 6 7.6445 3.6325 0.7587 23 7 4.2570 -0.0091 -0.0001 24 6 3.6204 -1.1585 0.0051 25 6 2.2234 -1.2010 0.0049 26 6 1.5123 -2.4988 0.0113 27 7 2.2111 -3.6499 0.0677 28 8 0.2981 -2.5267 -0.0343 29 1 -0.3633 -0.1334 1.0189 30 1 -0.3634 0.9492 -0.3939 31 1 -0.3634 -0.8157 -0.6250 32 1 1.6967 2.1358 -0.0004 33 1 6.1919 1.5410 -0.0594 34 1 5.0462 4.6831 -1.1357 35 1 6.3144 6.7871 -1.0115 36 1 8.4347 6.8791 0.2324 37 1 12.5835 2.5086 3.5138 38 1 8.0171 2.7488 1.2552 39 1 4.1829 -2.0805 0.0087 40 1 3.1802 -3.6277 0.1037 41 1 1.7450 -4.5005 0.0715 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411276087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:04 Heat of formation + Delta-G solvation = -26.615605 kcal Electronic energy + Delta-G solvation = -27634.420246 eV Core-core repulsion = 23480.520668 eV Total energy + Delta-G solvation = -4153.899578 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40986 -40.23782 -39.24378 -38.58677 -36.61730 -34.87437 -34.46120 -33.91130 -32.37673 -31.83832 -29.54312 -28.85446 -28.35460 -25.79942 -25.16689 -23.44315 -22.45370 -21.80355 -21.42590 -20.09088 -18.45037 -18.42257 -18.00872 -17.73706 -17.14995 -16.49689 -15.77722 -15.62612 -15.52386 -15.31185 -15.10111 -14.99696 -14.48783 -14.15641 -13.97137 -13.84113 -13.58619 -13.30299 -13.15682 -13.07782 -13.01278 -12.63409 -12.35677 -12.19762 -11.71810 -11.35436 -10.97832 -10.79192 -10.62967 -10.37459 -10.29399 -10.20253 -9.98268 -9.89460 -9.71471 -9.65193 -9.50170 -8.87195 -7.86216 -7.34764 -6.43976 -4.11442 -0.18363 0.70972 1.77133 2.16519 2.27150 2.77500 2.87169 2.97961 3.21900 3.24826 3.39317 3.49311 3.65234 4.11641 4.21934 4.22354 4.32152 4.47604 4.49511 4.71876 4.82942 5.03237 5.08132 5.24518 5.28696 5.36865 5.57073 5.65753 5.88166 5.88334 5.93464 6.03382 6.11923 6.14994 6.25797 6.44189 6.72864 6.81257 6.84273 7.11385 7.16244 7.20707 7.51418 7.63770 7.67710 7.74882 7.99261 8.12004 8.91344 9.52966 10.63639 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.002305 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.127094 B =12143.657297 C =13635.654276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.018 3.982 3 C -0.121 4.121 4 C 0.114 3.886 5 C 0.566 3.434 6 O -0.509 6.509 7 N -0.644 5.644 8 C 0.173 3.827 9 C -0.196 4.196 10 C -0.066 4.066 11 C -0.196 4.196 12 C 0.173 3.827 13 O -0.215 6.215 14 C -0.390 4.390 15 H 0.106 0.894 16 C 0.064 3.936 17 N -0.880 5.880 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.238 4.238 23 N -0.465 5.465 24 C 0.142 3.858 25 C -0.185 4.185 26 C 0.571 3.429 27 N -0.848 5.848 28 O -0.529 6.529 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.158 0.842 33 H 0.419 0.581 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.279 0.721 38 H 0.138 0.862 39 H 0.167 0.833 40 H 0.403 0.597 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.175 -10.111 -7.573 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.010 3.990 3 C -0.142 4.142 4 C -0.023 4.023 5 C 0.351 3.649 6 O -0.383 6.383 7 N -0.288 5.288 8 C 0.080 3.920 9 C -0.217 4.217 10 C -0.085 4.085 11 C -0.216 4.216 12 C 0.120 3.880 13 O -0.120 6.120 14 C -0.466 4.466 15 H 0.123 0.877 16 C -0.139 4.139 17 N -0.518 5.518 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.260 4.260 23 N -0.176 5.176 24 C -0.020 4.020 25 C -0.191 4.191 26 C 0.357 3.643 27 N -0.412 5.412 28 O -0.407 6.407 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.176 0.824 33 H 0.256 0.744 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.089 0.911 38 H 0.155 0.845 39 H 0.184 0.816 40 H 0.232 0.768 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -18.127 -9.083 -7.420 21.590 hybrid contribution 0.349 -0.565 0.311 0.733 sum -17.778 -9.648 -7.109 21.440 Atomic orbital electron populations 1.21194 0.88383 1.04335 1.04458 1.20520 0.97920 0.90760 0.89822 1.22093 0.93531 0.99778 0.98801 1.21359 0.91767 0.92169 0.96972 1.17872 0.82271 0.87382 0.77391 1.90808 1.69479 1.29688 1.48314 1.43239 1.05586 1.09650 1.70324 1.17432 0.91984 0.85605 0.96986 1.20724 1.02592 0.92660 1.05709 1.20549 0.93499 0.96914 0.97517 1.20288 0.98986 0.97669 1.04650 1.18790 0.86387 0.92662 0.90144 1.83600 1.32361 1.34580 1.61470 1.20739 1.03208 0.85667 1.36949 0.87715 1.24459 0.95901 0.98128 0.95453 1.69648 1.19860 1.25054 1.37227 0.86179 0.78483 0.82500 0.79753 1.19883 1.20830 1.18269 1.20957 0.97513 1.00430 1.07050 1.67588 1.40544 0.97741 1.11741 1.22920 0.90153 0.96300 0.92619 1.20943 0.95239 0.94366 1.08547 1.18004 0.86812 0.83920 0.75600 1.43757 1.11458 1.08459 1.77527 1.90776 1.13319 1.87144 1.49429 0.89764 0.91168 0.87670 0.82390 0.74361 0.85747 0.86308 0.86289 0.91056 0.84468 0.81641 0.76757 0.75998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 8.92 36.01 0.32 -0.72 16 2 C 0.02 0.17 5.95 -103.94 -0.62 -0.45 16 3 C -0.12 -1.29 9.30 -39.10 -0.36 -1.66 16 4 C 0.11 1.42 6.75 -82.94 -0.56 0.86 16 5 C 0.57 8.66 7.64 -12.13 -0.09 8.57 16 6 O -0.51 -8.87 13.82 5.36 0.07 -8.79 16 7 N -0.64 -10.24 5.32 -10.61 -0.06 -10.29 16 8 C 0.17 3.26 6.28 -83.75 -0.53 2.73 16 9 C -0.20 -3.58 8.68 -39.33 -0.34 -3.93 16 10 C -0.07 -1.15 10.03 -39.64 -0.40 -1.55 16 11 C -0.20 -3.87 9.99 -39.35 -0.39 -4.26 16 12 C 0.17 3.95 6.64 -39.14 -0.26 3.69 16 13 O -0.22 -5.58 8.58 0.04 0.00 -5.58 16 14 C -0.39 -10.78 9.95 30.88 0.31 -10.47 16 15 H 0.11 2.94 5.44 -52.48 -0.29 2.65 16 16 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 17 N -0.88 -25.00 13.96 55.48 0.77 -24.23 16 18 Si 0.91 21.40 28.62 -169.99 -4.86 16.53 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 22 C -0.24 -5.08 9.08 -39.20 -0.36 -5.43 16 23 N -0.46 -5.13 9.52 -9.48 -0.09 -5.22 16 24 C 0.14 1.14 10.70 -17.17 -0.18 0.96 16 25 C -0.19 -1.59 5.90 -104.73 -0.62 -2.20 16 26 C 0.57 4.56 8.04 -12.26 -0.10 4.46 16 27 N -0.85 -3.39 8.83 30.56 0.27 -3.12 16 28 O -0.53 -5.76 14.23 5.33 0.08 -5.69 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 31 H 0.11 0.96 5.79 -51.93 -0.30 0.66 16 32 H 0.16 1.57 7.63 -52.49 -0.40 1.17 16 33 H 0.42 5.91 8.15 -40.82 -0.33 5.58 16 34 H 0.12 2.20 6.30 -52.49 -0.33 1.87 16 35 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.12 2.16 8.06 -52.48 -0.42 1.73 16 37 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.14 3.02 5.65 -52.49 -0.30 2.73 16 39 H 0.17 0.67 6.42 -52.49 -0.34 0.33 16 40 H 0.40 0.62 6.90 -40.82 -0.28 0.34 16 41 H 0.41 1.13 8.93 -40.82 -0.36 0.76 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -33.62 355.37 -6.49 -40.11 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -3.75 Total: 8.67 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -4.28 Total: -7.74 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.90 Total: -42.86 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: 0.15 Total: -20.06 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.86 Total: 16.53 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.62 -6.49 -40.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411276087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.490 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds