Wall clock time and date at job start Sat Apr 11 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38471 * 120.82284 * 2 1 4 4 C 1.39290 * 119.19428 * 180.24157 * 3 2 1 5 5 C 1.48281 * 119.57699 * 179.77382 * 4 3 2 6 6 O 1.21506 * 119.99705 * 359.72728 * 5 4 3 7 7 N 1.34774 * 120.00174 * 179.73249 * 5 4 3 8 8 C 1.39814 * 120.00249 * 183.37287 * 7 5 4 9 9 C 1.38997 * 120.03460 * 324.27140 * 8 7 5 10 10 C 1.38144 * 120.06296 * 179.72182 * 9 8 7 11 11 C 1.38174 * 120.13895 * 0.55277 * 10 9 8 12 12 C 1.38915 * 120.08176 * 359.72581 * 11 10 9 13 13 O 1.35749 * 120.03405 * 179.97438 * 12 11 10 14 14 C 1.34834 * 116.99776 * 186.34481 * 13 12 11 15 15 H 1.08003 * 119.99910 * 354.85146 * 14 13 12 16 16 C 1.38650 * 119.99635 * 174.85778 * 14 13 12 17 17 N 1.31564 * 119.99365 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00545 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47181 * 89.99809 * 18 16 14 20 20 H 1.48497 * 109.47315 * 210.00306 * 18 16 14 21 21 H 1.48509 * 109.46849 * 330.00606 * 18 16 14 22 22 C 1.38739 * 120.04222 * 144.54903 * 8 7 5 23 23 N 1.32767 * 120.85122 * 359.50125 * 4 3 2 24 24 C 1.31389 * 121.79509 * 0.24783 * 23 4 3 25 25 C 1.39767 * 120.72295 * 0.02562 * 24 23 4 26 26 C 1.47991 * 120.46233 * 180.02562 * 25 24 23 27 27 N 1.34783 * 120.00158 * 2.47042 * 26 25 24 28 28 O 1.21536 * 120.00320 * 182.46862 * 26 25 24 29 29 H 1.08995 * 109.46986 * 262.54255 * 1 2 3 30 30 H 1.09000 * 109.47219 * 22.53954 * 1 2 3 31 31 H 1.08997 * 109.47478 * 142.54022 * 1 2 3 32 32 H 1.08000 * 120.40489 * 359.97438 * 3 2 1 33 33 H 0.96997 * 120.00265 * 3.64049 * 7 5 4 34 34 H 1.08000 * 119.96856 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.93159 * 180.28194 * 10 9 8 36 36 H 1.08009 * 119.96111 * 179.74169 * 11 10 9 37 37 H 0.97000 * 119.99552 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.06991 * 359.97438 * 22 8 7 39 39 H 1.07999 * 119.63503 * 179.97438 * 24 23 4 40 40 H 0.97003 * 119.99704 * 359.97438 * 27 26 25 41 41 H 0.96994 * 119.99883 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1891 0.0000 4 6 3.6088 1.1495 -0.0051 5 6 4.3771 2.4178 -0.0103 6 8 3.7918 3.4826 -0.0150 7 7 5.7245 2.3895 -0.0098 8 6 6.4489 3.5836 0.0566 9 6 5.9748 4.7215 -0.5856 10 6 6.6871 5.9031 -0.5156 11 6 7.8781 5.9548 0.1830 12 6 8.3603 4.8196 0.8222 13 8 9.5308 4.8714 1.5078 14 6 10.0081 3.7074 1.9929 15 1 9.4234 2.8040 1.9012 16 6 11.2494 3.6704 2.6094 17 7 11.7153 2.5344 3.0822 18 14 12.2609 5.2328 2.7675 19 1 11.9239 5.9136 4.0434 20 1 13.7058 4.8904 2.7556 21 1 11.9568 6.1365 1.6289 22 6 7.6445 3.6325 0.7587 23 7 4.2570 -0.0091 -0.0001 24 6 3.6204 -1.1585 0.0051 25 6 2.2234 -1.2010 0.0049 26 6 1.5123 -2.4988 0.0113 27 7 2.2111 -3.6499 0.0677 28 8 0.2981 -2.5267 -0.0343 29 1 -0.3633 -0.1334 1.0189 30 1 -0.3634 0.9492 -0.3939 31 1 -0.3634 -0.8157 -0.6250 32 1 1.6967 2.1358 -0.0004 33 1 6.1919 1.5410 -0.0594 34 1 5.0462 4.6831 -1.1357 35 1 6.3144 6.7871 -1.0115 36 1 8.4347 6.8791 0.2324 37 1 12.5835 2.5086 3.5138 38 1 8.0171 2.7488 1.2552 39 1 4.1829 -2.0805 0.0087 40 1 3.1802 -3.6277 0.1037 41 1 1.7450 -4.5005 0.0715 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411276087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:03 Heat of formation + Delta-G solvation = -51.790731 kcal Electronic energy + Delta-G solvation = -27635.511922 eV Core-core repulsion = 23480.520668 eV Total energy + Delta-G solvation = -4154.991254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.29807 -41.42445 -40.53292 -39.70624 -38.21612 -35.92536 -35.33013 -34.74585 -34.38250 -32.65445 -31.09913 -30.40382 -29.06163 -27.30540 -26.56682 -24.32661 -23.51917 -23.42433 -22.34156 -21.34431 -20.00586 -19.48705 -19.02368 -18.96106 -18.26439 -17.36605 -17.00715 -16.87041 -16.62570 -16.46198 -16.19053 -16.09840 -15.81563 -15.67256 -15.44805 -15.07652 -14.73695 -14.68680 -14.22258 -14.03331 -14.02748 -13.86975 -13.75337 -13.33594 -13.27563 -12.89107 -12.73752 -12.46915 -12.08383 -11.62121 -11.41298 -11.32621 -11.20055 -10.89086 -10.83969 -10.68975 -10.58430 -10.48937 -9.43945 -8.98733 -8.48855 -6.21920 -1.02135 -0.03158 0.34485 0.62851 1.21953 1.34240 1.38338 1.53951 1.73993 1.90329 2.29736 2.34644 2.62623 2.76309 2.80809 3.03503 3.15223 3.42803 3.45675 3.57547 3.85413 3.86192 4.09255 4.29171 4.38230 4.40059 4.52170 4.52465 4.60036 4.65097 4.72938 4.90426 4.96794 5.18644 5.31229 5.34525 5.35254 5.42813 5.60681 5.74809 5.84461 5.87290 6.14511 6.22077 6.30116 6.48904 6.84828 6.85668 7.19146 7.57640 8.62404 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.002305 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.127094 B =12143.657297 C =13635.654276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.013 3.987 3 C -0.119 4.119 4 C 0.095 3.905 5 C 0.568 3.432 6 O -0.533 6.533 7 N -0.644 5.644 8 C 0.174 3.826 9 C -0.189 4.189 10 C -0.052 4.052 11 C -0.196 4.196 12 C 0.140 3.860 13 O -0.239 6.239 14 C -0.399 4.399 15 H 0.083 0.917 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.269 1.269 21 H -0.260 1.260 22 C -0.250 4.250 23 N -0.480 5.480 24 C 0.148 3.852 25 C -0.179 4.179 26 C 0.570 3.430 27 N -0.825 5.825 28 O -0.561 6.561 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.426 0.574 34 H 0.137 0.863 35 H 0.163 0.837 36 H 0.137 0.863 37 H 0.285 0.715 38 H 0.119 0.881 39 H 0.207 0.793 40 H 0.417 0.583 41 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.449 -10.015 -8.659 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.004 3.996 3 C -0.140 4.140 4 C -0.041 4.041 5 C 0.355 3.645 6 O -0.409 6.409 7 N -0.288 5.288 8 C 0.080 3.920 9 C -0.209 4.209 10 C -0.070 4.070 11 C -0.215 4.215 12 C 0.090 3.910 13 O -0.146 6.146 14 C -0.475 4.475 15 H 0.100 0.900 16 C -0.186 4.186 17 N -0.562 5.562 18 Si 0.791 3.209 19 H -0.193 1.193 20 H -0.193 1.193 21 H -0.184 1.184 22 C -0.272 4.272 23 N -0.191 5.191 24 C -0.014 4.014 25 C -0.185 4.185 26 C 0.355 3.645 27 N -0.390 5.390 28 O -0.441 6.441 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.179 0.821 33 H 0.264 0.736 34 H 0.155 0.845 35 H 0.181 0.819 36 H 0.155 0.845 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.224 0.776 40 H 0.249 0.751 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -19.408 -9.029 -8.527 23.041 hybrid contribution 0.435 -0.726 0.505 0.986 sum -18.973 -9.755 -8.022 22.792 Atomic orbital electron populations 1.21171 0.87488 1.04789 1.04457 1.20715 0.98611 0.90715 0.89525 1.22113 0.92827 1.00480 0.98550 1.20954 0.91945 0.91487 0.99757 1.18296 0.81761 0.88362 0.76110 1.90772 1.69782 1.30956 1.49373 1.43248 1.06008 1.09076 1.70503 1.17506 0.91285 0.87102 0.96100 1.21060 1.02709 0.92621 1.04559 1.21022 0.91992 0.98068 0.95943 1.20605 0.99745 0.97228 1.03965 1.19338 0.86033 0.94396 0.91261 1.83548 1.34084 1.33473 1.63473 1.20699 1.03492 0.85899 1.37449 0.89967 1.25249 0.96915 1.01219 0.95262 1.69726 1.20721 1.26892 1.38854 0.85244 0.77474 0.78603 0.79611 1.19267 1.19329 1.18420 1.20906 0.98704 0.99655 1.07900 1.67557 1.41083 0.98125 1.12370 1.23531 0.90277 0.96653 0.90933 1.21149 0.95550 0.94640 1.07121 1.17931 0.86429 0.84449 0.75687 1.43596 1.12243 1.07753 1.75425 1.90775 1.14607 1.87528 1.51199 0.89588 0.89796 0.88443 0.82111 0.73580 0.84540 0.81913 0.84529 0.90583 0.86350 0.77615 0.75067 0.74868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 8.92 71.24 0.64 -1.22 16 2 C 0.01 0.23 5.95 -19.42 -0.12 0.11 16 3 C -0.12 -2.43 9.30 22.58 0.21 -2.22 16 4 C 0.09 2.28 6.75 41.93 0.28 2.57 16 5 C 0.57 17.19 7.64 86.92 0.66 17.85 16 6 O -0.53 -18.22 13.82 -3.73 -0.05 -18.27 16 7 N -0.64 -20.53 5.32 -305.79 -1.63 -22.16 16 8 C 0.17 6.55 6.28 38.17 0.24 6.79 16 9 C -0.19 -6.56 8.68 22.43 0.19 -6.37 16 10 C -0.05 -1.67 10.03 22.23 0.22 -1.45 16 11 C -0.20 -7.44 9.99 22.42 0.22 -7.22 16 12 C 0.14 6.48 6.64 22.56 0.15 6.63 16 13 O -0.24 -12.72 8.58 -22.78 -0.20 -12.92 16 14 C -0.40 -23.06 9.95 67.92 0.68 -22.38 16 15 H 0.08 4.95 5.44 -2.91 -0.02 4.94 16 16 C 0.01 0.69 5.49 84.83 0.47 1.16 16 17 N -0.92 -54.06 13.96 21.61 0.30 -53.76 16 18 Si 0.97 44.69 28.62 68.60 1.96 46.65 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 22 C -0.25 -11.03 9.08 22.52 0.20 -10.82 16 23 N -0.48 -10.01 9.52 -183.92 -1.75 -11.76 16 24 C 0.15 2.04 10.70 85.13 0.91 2.95 16 25 C -0.18 -2.72 5.90 -19.93 -0.12 -2.83 16 26 C 0.57 7.89 8.04 86.83 0.70 8.58 16 27 N -0.83 -4.22 8.83 -175.50 -1.55 -5.77 16 28 O -0.56 -11.43 14.23 -3.83 -0.05 -11.48 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.00 8.06 -2.39 -0.02 0.98 16 31 H 0.10 1.69 5.79 -2.39 -0.01 1.68 16 32 H 0.16 3.10 7.63 -2.91 -0.02 3.08 16 33 H 0.43 12.23 8.15 -92.71 -0.76 11.48 16 34 H 0.14 4.50 6.30 -2.91 -0.02 4.48 16 35 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 36 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.12 5.61 5.65 -2.91 -0.02 5.59 16 39 H 0.21 0.92 6.42 -2.91 -0.02 0.90 16 40 H 0.42 -0.20 6.90 -92.71 -0.64 -0.83 16 41 H 0.42 1.15 8.93 -92.71 -0.83 0.32 16 Total: -1.00 -75.33 355.37 1.52 -73.81 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -1.06 Total: 23.52 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.55 Total: -7.87 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -4.62 Total: -93.44 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.30 Total: -42.68 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.96 Total: 46.65 kcal Total: -75.33 1.52 -73.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411276087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.024 kcal (2) G-P(sol) polarization free energy of solvation -75.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds