Wall clock time and date at job start Sat Apr 11 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35239 * 126.06661 * 2 1 4 4 C 1.40407 * 107.86731 * 179.97438 * 3 2 1 5 5 N 1.40156 * 125.97630 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99816 * 0.02562 * 5 4 3 7 7 O 1.21290 * 119.99705 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00297 * 179.97438 * 6 5 4 9 9 C 1.53005 * 110.28009 * 302.11368 * 8 6 5 10 10 C 1.54167 * 110.31612 * 64.33245 * 8 6 5 11 11 C 1.53878 * 108.70371 * 91.00106 * 10 8 6 12 12 C 1.55052 * 106.62556 * 47.17242 * 11 10 8 13 13 S 1.82915 * 110.32160 * 179.97438 * 8 6 5 14 14 O 1.42104 * 109.35348 * 356.61949 * 13 8 6 15 15 O 1.42101 * 109.35190 * 129.82248 * 13 8 6 16 16 N 1.31223 * 108.05085 * 359.75934 * 4 3 2 17 17 N 1.34972 * 126.07030 * 179.97438 * 2 1 3 18 18 C 1.46499 * 125.97476 * 359.96744 * 17 2 1 19 19 C 1.50701 * 109.46992 * 89.99778 * 18 17 2 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47094 * 90.00289 * 23 21 19 25 25 H 1.48505 * 109.47195 * 210.00171 * 23 21 19 26 26 H 1.48493 * 109.47449 * 330.00136 * 23 21 19 27 27 H 1.09000 * 109.47512 * 269.99795 * 1 2 3 28 28 H 1.08995 * 109.47170 * 30.00661 * 1 2 3 29 29 H 1.09001 * 109.46744 * 150.00471 * 1 2 3 30 30 H 1.07999 * 126.06885 * 359.97438 * 3 2 1 31 31 H 0.97001 * 120.00375 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.47175 * 59.30215 * 9 8 6 33 33 H 1.08996 * 109.46826 * 179.29736 * 9 8 6 34 34 H 1.08992 * 109.46922 * 299.29637 * 9 8 6 35 35 H 1.09000 * 109.64359 * 210.84638 * 10 8 6 36 36 H 1.08992 * 109.65147 * 331.14302 * 10 8 6 37 37 H 1.09000 * 110.02638 * 287.88728 * 11 10 8 38 38 H 1.08999 * 110.02895 * 166.47122 * 11 10 8 39 39 H 1.08993 * 110.78840 * 199.29788 * 12 11 10 40 40 H 1.09003 * 110.78316 * 75.83805 * 12 11 10 41 41 H 1.09002 * 109.47391 * 329.99768 * 18 17 2 42 42 H 1.09001 * 109.46813 * 209.99825 * 18 17 2 43 43 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6547 0.0006 5 7 4.7735 1.4750 0.0003 6 6 4.6367 2.8158 -0.0001 7 8 3.5301 3.3125 -0.0007 8 6 5.8585 3.6980 0.0001 9 6 6.7346 3.3902 1.2162 10 6 6.6595 3.5032 -1.3026 11 6 6.1644 4.5227 -2.3434 12 6 6.1000 5.8950 -1.6245 13 16 5.3694 5.4605 -0.0014 14 8 3.9539 5.5564 -0.0814 15 8 6.0702 6.1445 1.0284 16 7 3.6337 -0.6576 0.0062 17 7 2.3017 -1.0910 0.0005 18 6 1.8501 -2.4846 0.0018 19 6 1.6946 -2.9636 -1.4186 20 1 1.9109 -2.2967 -2.2401 21 6 1.2771 -4.2535 -1.6694 22 7 1.0141 -5.0657 -0.6690 23 14 1.0850 -4.8473 -3.4300 24 1 2.3661 -5.4359 -3.8964 25 1 0.0160 -5.8764 -3.4915 26 1 0.7200 -3.7019 -4.3017 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.9719 2.1211 -0.0004 31 1 5.6584 1.0778 0.0004 32 1 7.0384 2.3437 1.1895 33 1 7.6196 4.0261 1.1966 34 1 6.1698 3.5815 2.1285 35 1 7.7200 3.6637 -1.1082 36 1 6.5070 2.4918 -1.6790 37 1 5.1736 4.2411 -2.6998 38 1 6.8622 4.5716 -3.1794 39 1 5.4545 6.5858 -2.1668 40 1 7.0986 6.3136 -1.4999 41 1 0.8917 -2.5556 0.5161 42 1 2.5851 -3.1042 0.5158 43 1 0.7200 -5.9730 -0.8454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411322624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:09 Heat of formation + Delta-G solvation = -21.020948 kcal Electronic energy + Delta-G solvation = -28094.834962 eV Core-core repulsion = 24076.621938 eV Total energy + Delta-G solvation = -4018.213024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.94581 -39.79283 -37.30100 -36.82627 -36.09573 -34.95738 -33.47959 -32.72214 -31.36525 -30.79434 -27.42118 -26.80183 -26.37689 -24.91612 -23.22604 -22.49069 -21.50733 -19.86584 -19.49225 -18.65656 -17.42927 -16.98909 -16.72595 -16.46881 -15.91168 -15.70858 -15.34342 -15.20785 -14.74502 -14.55141 -14.31657 -14.17393 -13.94632 -13.39704 -13.20769 -13.04865 -12.75032 -12.50507 -12.37680 -12.29725 -12.26127 -12.16773 -12.13091 -11.91990 -11.70252 -11.55528 -11.44041 -11.11767 -10.95015 -10.86982 -10.54415 -10.50225 -10.27381 -9.98002 -9.61180 -9.57086 -8.67830 -7.99504 -7.51934 -6.28941 -4.36831 -0.31101 2.09177 2.22307 2.52280 2.81980 3.18955 3.25380 3.27603 3.29623 3.53409 3.62555 3.86716 3.89921 4.10980 4.18435 4.24866 4.29919 4.47003 4.55288 4.93615 5.02282 5.04755 5.13298 5.16666 5.28435 5.37585 5.39806 5.48361 5.61176 5.67554 5.91359 6.09069 6.17521 6.44777 6.48476 6.64584 6.90192 7.01409 7.35179 7.53578 7.63632 7.85095 8.00163 8.06190 8.58752 8.71061 9.29709 10.78373 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021466 B = 0.002666 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.089509 B =10501.081033 C =10802.626868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.094 3.906 3 C -0.290 4.290 4 C 0.260 3.740 5 N -0.619 5.619 6 C 0.541 3.459 7 O -0.473 6.473 8 C -0.560 4.560 9 C -0.124 4.124 10 C -0.108 4.108 11 C -0.122 4.122 12 C -0.592 4.592 13 S 2.409 3.591 14 O -0.884 6.884 15 O -0.931 6.931 16 N -0.319 5.319 17 N -0.315 5.315 18 C 0.258 3.742 19 C -0.537 4.537 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.162 0.838 31 H 0.410 0.590 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.414 19.268 -0.809 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.321 4.321 4 C 0.008 3.992 5 N -0.267 5.267 6 C 0.323 3.677 7 O -0.343 6.343 8 C -0.650 4.650 9 C -0.182 4.182 10 C -0.146 4.146 11 C -0.160 4.160 12 C -0.722 4.722 13 S 2.587 3.413 14 O -0.881 6.881 15 O -0.928 6.928 16 N -0.149 5.149 17 N -0.098 5.098 18 C 0.141 3.859 19 C -0.576 4.576 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.734 3.266 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.196 1.196 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.180 0.820 31 H 0.246 0.754 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.732 18.788 -0.077 22.150 hybrid contribution 0.550 -0.625 -1.550 1.759 sum 12.281 18.163 -1.627 21.986 Atomic orbital electron populations 1.20392 0.87812 1.03956 1.02622 1.21080 0.94995 0.87045 1.00672 1.21309 0.89666 1.00052 1.21084 1.18933 0.86999 0.89587 1.03672 1.42226 1.07699 1.04533 1.72271 1.19090 0.88697 0.82045 0.77894 1.90951 1.24743 1.72809 1.45833 1.30527 1.04593 1.24523 1.05358 1.21581 0.98875 1.04444 0.93273 1.22162 1.00061 1.02714 0.89690 1.22219 1.04915 0.89695 0.99179 1.30705 1.13966 1.05867 1.21655 1.09064 0.76720 0.77166 0.78389 1.93742 1.25101 1.83438 1.85801 1.93602 1.75890 1.69266 1.54015 1.77244 1.00098 1.08342 1.29239 1.49015 1.00886 1.07840 1.52025 1.19705 0.96019 0.71246 0.98971 1.21317 1.46931 0.97963 0.91349 0.91735 1.24931 0.94643 0.96069 0.98135 1.69919 1.44825 1.07128 1.31021 0.86349 0.78014 0.78597 0.83688 1.20360 1.20852 1.19637 0.91003 0.90495 0.89878 0.82038 0.75410 0.89999 0.89457 0.90524 0.88325 0.88351 0.89060 0.87975 0.84159 0.84424 0.92732 0.92995 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.01 0.36 -1.17 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -5.92 9.52 -39.83 -0.38 -6.30 16 4 C 0.26 5.13 8.11 -154.39 -1.25 3.88 16 5 N -0.62 -9.01 5.08 -11.13 -0.06 -9.06 16 6 C 0.54 7.40 6.46 -10.98 -0.07 7.33 16 7 O -0.47 -8.29 11.08 -18.65 -0.21 -8.49 16 8 C -0.56 -4.99 0.93 -91.16 -0.08 -5.08 16 9 C -0.12 -0.89 7.82 37.16 0.29 -0.60 16 10 C -0.11 -0.61 5.46 -25.66 -0.14 -0.75 16 11 C -0.12 -0.67 6.48 -25.19 -0.16 -0.83 16 12 C -0.59 -3.26 7.30 38.24 0.28 -2.98 16 13 S 2.41 24.03 5.78 -107.50 -0.62 23.40 16 14 O -0.88 -13.06 15.22 -67.20 -1.02 -14.08 16 15 O -0.93 -11.00 17.22 -57.71 -0.99 -11.99 16 16 N -0.32 -7.15 12.59 31.44 0.40 -6.75 16 17 N -0.32 -7.36 3.59 -58.32 -0.21 -7.57 16 18 C 0.26 6.53 5.81 -5.19 -0.03 6.50 16 19 C -0.54 -14.57 9.39 -34.44 -0.32 -14.90 16 20 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 21 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 23 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 30 H 0.16 3.25 5.92 -52.49 -0.31 2.94 16 31 H 0.41 4.64 8.04 -40.82 -0.33 4.31 16 32 H 0.08 0.47 7.50 -51.93 -0.39 0.08 16 33 H 0.09 0.44 8.00 -51.93 -0.42 0.03 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.27 7.83 -51.93 -0.41 -0.13 16 36 H 0.10 0.58 7.54 -51.93 -0.39 0.19 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 42 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -36.69 365.69 -9.64 -46.33 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.97 Total: 2.79 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -2.18 Total: -11.84 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.87 Total: -47.42 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -2.22 Total: -34.57 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 24.03 SS G_CDS: -0.62 Total: 23.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.69 -9.64 -46.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411322624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.309 kcal (2) G-P(sol) polarization free energy of solvation -36.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds