Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35239 * 126.06661 * 2 1 4 4 C 1.40407 * 107.86731 * 179.97438 * 3 2 1 5 5 N 1.40156 * 125.97630 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99816 * 0.02562 * 5 4 3 7 7 O 1.21290 * 119.99705 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00297 * 179.97438 * 6 5 4 9 9 C 1.53005 * 110.28009 * 302.11368 * 8 6 5 10 10 C 1.54167 * 110.31612 * 64.33245 * 8 6 5 11 11 C 1.53878 * 108.70371 * 91.00106 * 10 8 6 12 12 C 1.55052 * 106.62556 * 47.17242 * 11 10 8 13 13 S 1.82915 * 110.32160 * 179.97438 * 8 6 5 14 14 O 1.42104 * 109.35348 * 356.61949 * 13 8 6 15 15 O 1.42101 * 109.35190 * 129.82248 * 13 8 6 16 16 N 1.31223 * 108.05085 * 359.75934 * 4 3 2 17 17 N 1.34972 * 126.07030 * 179.97438 * 2 1 3 18 18 C 1.46499 * 125.97476 * 359.96744 * 17 2 1 19 19 C 1.50701 * 109.46992 * 89.99778 * 18 17 2 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47094 * 90.00289 * 23 21 19 25 25 H 1.48505 * 109.47195 * 210.00171 * 23 21 19 26 26 H 1.48493 * 109.47449 * 330.00136 * 23 21 19 27 27 H 1.09000 * 109.47512 * 269.99795 * 1 2 3 28 28 H 1.08995 * 109.47170 * 30.00661 * 1 2 3 29 29 H 1.09001 * 109.46744 * 150.00471 * 1 2 3 30 30 H 1.07999 * 126.06885 * 359.97438 * 3 2 1 31 31 H 0.97001 * 120.00375 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.47175 * 59.30215 * 9 8 6 33 33 H 1.08996 * 109.46826 * 179.29736 * 9 8 6 34 34 H 1.08992 * 109.46922 * 299.29637 * 9 8 6 35 35 H 1.09000 * 109.64359 * 210.84638 * 10 8 6 36 36 H 1.08992 * 109.65147 * 331.14302 * 10 8 6 37 37 H 1.09000 * 110.02638 * 287.88728 * 11 10 8 38 38 H 1.08999 * 110.02895 * 166.47122 * 11 10 8 39 39 H 1.08993 * 110.78840 * 199.29788 * 12 11 10 40 40 H 1.09003 * 110.78316 * 75.83805 * 12 11 10 41 41 H 1.09002 * 109.47391 * 329.99768 * 18 17 2 42 42 H 1.09001 * 109.46813 * 209.99825 * 18 17 2 43 43 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6547 0.0006 5 7 4.7735 1.4750 0.0003 6 6 4.6367 2.8158 -0.0001 7 8 3.5301 3.3125 -0.0007 8 6 5.8585 3.6980 0.0001 9 6 6.7346 3.3902 1.2162 10 6 6.6595 3.5032 -1.3026 11 6 6.1644 4.5227 -2.3434 12 6 6.1000 5.8950 -1.6245 13 16 5.3694 5.4605 -0.0014 14 8 3.9539 5.5564 -0.0814 15 8 6.0702 6.1445 1.0284 16 7 3.6337 -0.6576 0.0062 17 7 2.3017 -1.0910 0.0005 18 6 1.8501 -2.4846 0.0018 19 6 1.6946 -2.9636 -1.4186 20 1 1.9109 -2.2967 -2.2401 21 6 1.2771 -4.2535 -1.6694 22 7 1.0141 -5.0657 -0.6690 23 14 1.0850 -4.8473 -3.4300 24 1 2.3661 -5.4359 -3.8964 25 1 0.0160 -5.8764 -3.4915 26 1 0.7200 -3.7019 -4.3017 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.9719 2.1211 -0.0004 31 1 5.6584 1.0778 0.0004 32 1 7.0384 2.3437 1.1895 33 1 7.6196 4.0261 1.1966 34 1 6.1698 3.5815 2.1285 35 1 7.7200 3.6637 -1.1082 36 1 6.5070 2.4918 -1.6790 37 1 5.1736 4.2411 -2.6998 38 1 6.8622 4.5716 -3.1794 39 1 5.4545 6.5858 -2.1668 40 1 7.0986 6.3136 -1.4999 41 1 0.8917 -2.5556 0.5161 42 1 2.5851 -3.1042 0.5158 43 1 0.7200 -5.9730 -0.8454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411322624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = -47.509579 kcal Electronic energy + Delta-G solvation = -28095.983595 eV Core-core repulsion = 24076.621938 eV Total energy + Delta-G solvation = -4019.361658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.41758 -41.06995 -38.12758 -37.53685 -36.95106 -36.40639 -35.32406 -33.59365 -32.81506 -32.51966 -28.66630 -27.91805 -27.89375 -25.90934 -24.83544 -23.39116 -22.53526 -21.32527 -20.81254 -19.58848 -18.81840 -18.43189 -17.74795 -17.63148 -17.27876 -16.76840 -16.57046 -16.45147 -16.11898 -15.71864 -15.40190 -15.21684 -14.75909 -14.71135 -14.34870 -14.05091 -13.84464 -13.72946 -13.64573 -13.60717 -13.36183 -13.17492 -13.10335 -13.00385 -12.86751 -12.73627 -12.69666 -12.51435 -12.26840 -12.12412 -11.99771 -11.65671 -11.58663 -11.38048 -11.16518 -10.81342 -10.73856 -9.62798 -9.19359 -8.33821 -6.51539 -1.02105 0.79959 1.21210 1.30316 1.38206 1.39230 1.50832 1.54594 2.09996 2.13221 2.35269 2.63367 2.95613 2.96806 3.27195 3.42316 3.54536 3.66137 3.83463 3.90537 4.11652 4.13323 4.43216 4.51912 4.57750 4.62815 4.68293 4.72263 4.74281 4.85134 4.94909 4.96324 4.97271 4.98112 5.08977 5.10808 5.11539 5.21690 5.52626 5.79545 5.87848 6.14096 6.22436 6.60297 6.85146 7.02307 7.19597 8.72445 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021466 B = 0.002666 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.089509 B =10501.081033 C =10802.626868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.089 3.911 3 C -0.303 4.303 4 C 0.272 3.728 5 N -0.610 5.610 6 C 0.539 3.461 7 O -0.512 6.512 8 C -0.545 4.545 9 C -0.131 4.131 10 C -0.108 4.108 11 C -0.127 4.127 12 C -0.554 4.554 13 S 2.385 3.615 14 O -0.948 6.948 15 O -0.959 6.959 16 N -0.351 5.351 17 N -0.341 5.341 18 C 0.275 3.725 19 C -0.553 4.553 20 H 0.050 0.950 21 C 0.023 3.977 22 N -0.918 5.918 23 Si 0.972 3.028 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.269 1.269 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.164 0.836 31 H 0.426 0.574 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.058 0.942 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.138 0.862 39 H 0.154 0.846 40 H 0.176 0.824 41 H 0.051 0.949 42 H 0.026 0.974 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.750 20.345 -2.831 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C -0.334 4.334 4 C 0.018 3.982 5 N -0.261 5.261 6 C 0.323 3.677 7 O -0.385 6.385 8 C -0.636 4.636 9 C -0.189 4.189 10 C -0.146 4.146 11 C -0.165 4.165 12 C -0.688 4.688 13 S 2.569 3.431 14 O -0.945 6.945 15 O -0.956 6.956 16 N -0.182 5.182 17 N -0.123 5.123 18 C 0.156 3.844 19 C -0.591 4.591 20 H 0.069 0.931 21 C -0.178 4.178 22 N -0.556 5.556 23 Si 0.796 3.204 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.194 1.194 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.182 0.818 31 H 0.265 0.735 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.077 0.923 35 H 0.161 0.839 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.172 0.828 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.072 19.886 -2.044 24.447 hybrid contribution -0.095 -0.843 -0.922 1.253 sum 13.977 19.043 -2.966 23.808 Atomic orbital electron populations 1.20507 0.85446 1.04404 1.04114 1.21718 0.96656 0.86436 0.99333 1.21463 0.90241 0.99947 1.21705 1.19254 0.88571 0.89239 1.01127 1.42347 1.07042 1.04544 1.72146 1.19997 0.89950 0.81714 0.76025 1.90936 1.27060 1.73360 1.47122 1.30427 1.02777 1.21982 1.08396 1.21760 0.99299 1.06242 0.91566 1.22389 1.01829 1.02897 0.87496 1.22367 1.04992 0.89099 1.00057 1.30519 1.15518 1.06580 1.16188 1.09459 0.75787 0.77445 0.80389 1.93670 1.29168 1.84378 1.87316 1.93558 1.75583 1.69747 1.56721 1.77166 1.00005 1.09673 1.31326 1.48807 1.01731 1.07500 1.54267 1.19262 0.94916 0.72293 0.97883 1.21432 1.47639 0.98368 0.91707 0.93123 1.25741 0.93903 0.95928 1.02256 1.70003 1.45035 1.07574 1.33027 0.85342 0.78291 0.78180 0.78605 1.19862 1.19637 1.19378 0.88940 0.88082 0.91221 0.81833 0.73479 0.88349 0.86481 0.92315 0.83928 0.88304 0.91005 0.84357 0.82784 0.80575 0.93135 0.95628 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.98 9.89 71.24 0.70 -2.27 16 2 C 0.09 3.81 6.92 41.39 0.29 4.10 16 3 C -0.30 -12.65 9.52 22.11 0.21 -12.44 16 4 C 0.27 10.92 8.11 133.32 1.08 12.00 16 5 N -0.61 -17.57 5.08 -307.51 -1.56 -19.13 16 6 C 0.54 14.66 6.46 87.66 0.57 15.23 16 7 O -0.51 -18.57 11.08 20.07 0.22 -18.35 16 8 C -0.55 -8.77 0.93 -11.14 -0.01 -8.78 16 9 C -0.13 -1.59 7.82 71.98 0.56 -1.03 16 10 C -0.11 -0.79 5.46 31.29 0.17 -0.62 16 11 C -0.13 -0.87 6.48 31.59 0.20 -0.67 16 12 C -0.55 -3.95 7.30 72.68 0.53 -3.41 16 13 S 2.39 45.75 5.78 -56.49 -0.33 45.42 16 14 O -0.95 -29.38 15.22 -118.41 -1.80 -31.19 16 15 O -0.96 -22.06 17.22 -127.49 -2.20 -24.26 16 16 N -0.35 -16.19 12.59 -54.45 -0.69 -16.88 16 17 N -0.34 -16.46 3.59 -338.44 -1.22 -17.67 16 18 C 0.28 14.50 5.81 85.63 0.50 15.00 16 19 C -0.55 -30.76 9.39 25.60 0.24 -30.52 16 20 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 21 C 0.02 1.24 5.46 84.66 0.46 1.70 16 22 N -0.92 -51.56 13.29 21.45 0.28 -51.28 16 23 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.07 2.58 7.71 -2.39 -0.02 2.56 16 30 H 0.16 6.79 5.92 -2.91 -0.02 6.77 16 31 H 0.43 9.15 8.04 -92.71 -0.74 8.41 16 32 H 0.10 0.87 7.50 -2.39 -0.02 0.85 16 33 H 0.12 0.76 8.00 -2.39 -0.02 0.74 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.14 -0.11 7.83 -2.39 -0.02 -0.13 16 36 H 0.10 0.82 7.54 -2.39 -0.02 0.80 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.18 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.05 2.65 7.65 -2.39 -0.02 2.63 16 42 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -84.69 365.69 0.55 -84.14 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.30 Total: 16.34 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 5.51 Total: -11.72 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -3.18 Total: -104.96 kcal Atomic # 8 Polarization: -70.02 SS G_CDS: -3.77 Total: -73.79 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 45.75 SS G_CDS: -0.33 Total: 45.42 kcal Total: -84.69 0.55 -84.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411322624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.627 kcal (2) G-P(sol) polarization free energy of solvation -84.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds