Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35245 * 126.07071 * 2 1 4 4 C 1.40404 * 107.86826 * 180.02562 * 3 2 1 5 5 N 1.40155 * 125.97199 * 180.02562 * 4 3 2 6 6 C 1.34781 * 120.00154 * 359.97438 * 5 4 3 7 7 O 1.21297 * 119.99961 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00316 * 180.02562 * 6 5 4 9 9 C 1.52995 * 110.28368 * 57.88268 * 8 6 5 10 10 C 1.54171 * 110.31669 * 295.66310 * 8 6 5 11 11 C 1.53880 * 108.70426 * 269.00127 * 10 8 6 12 12 C 1.55047 * 106.62283 * 312.82347 * 11 10 8 13 13 S 1.82910 * 110.32156 * 180.02562 * 8 6 5 14 14 O 1.42102 * 109.35416 * 3.37962 * 13 8 6 15 15 O 1.42107 * 109.35444 * 230.17932 * 13 8 6 16 16 N 1.31218 * 108.05386 * 0.26050 * 4 3 2 17 17 N 1.34970 * 126.07185 * 180.02562 * 2 1 3 18 18 C 1.46493 * 125.97259 * 359.97438 * 17 2 1 19 19 C 1.50704 * 109.47408 * 89.99384 * 18 17 2 20 20 H 1.07997 * 119.99804 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99850 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99432 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00495 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46975 * 89.99341 * 23 21 19 25 25 H 1.48490 * 109.47439 * 209.99872 * 23 21 19 26 26 H 1.48501 * 109.46867 * 330.00110 * 23 21 19 27 27 H 1.09004 * 109.46777 * 89.97523 * 1 2 3 28 28 H 1.08994 * 109.47288 * 209.97156 * 1 2 3 29 29 H 1.09004 * 109.47635 * 329.97646 * 1 2 3 30 30 H 1.08003 * 126.05952 * 0.02562 * 3 2 1 31 31 H 0.97000 * 120.00197 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47351 * 182.11563 * 9 8 6 33 33 H 1.09002 * 109.47509 * 302.11750 * 9 8 6 34 34 H 1.09004 * 109.46919 * 62.11264 * 9 8 6 35 35 H 1.09003 * 109.64318 * 149.15216 * 10 8 6 36 36 H 1.08998 * 109.64398 * 28.85897 * 10 8 6 37 37 H 1.09000 * 110.02434 * 193.52750 * 11 10 8 38 38 H 1.08998 * 110.01939 * 72.11461 * 11 10 8 39 39 H 1.08999 * 110.78520 * 160.70277 * 12 11 10 40 40 H 1.09002 * 110.78994 * 283.96773 * 12 11 10 41 41 H 1.09001 * 109.47205 * 209.99245 * 18 17 2 42 42 H 1.09004 * 109.47491 * 329.99651 * 18 17 2 43 43 H 0.97003 * 119.99088 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0006 5 7 4.7734 1.4749 -0.0003 6 6 4.6366 2.8158 0.0001 7 8 3.5301 3.3125 0.0007 8 6 5.8585 3.6979 -0.0001 9 6 6.7346 3.3901 -1.2160 10 6 6.6595 3.5032 1.3027 11 6 6.1644 4.5228 2.3435 12 6 6.1001 5.8949 1.6245 13 16 5.3695 5.4604 0.0014 14 8 3.9540 5.5564 0.0814 15 8 6.0703 6.1444 -1.0284 16 7 3.6336 -0.6576 -0.0066 17 7 2.3016 -1.0909 -0.0005 18 6 1.8500 -2.4845 -0.0006 19 6 1.6945 -2.9621 -1.4214 20 1 1.9109 -2.2945 -2.2423 21 6 1.2770 -4.2518 -1.6734 22 7 1.1418 -4.6687 -2.9134 23 14 0.9034 -5.4069 -0.2537 24 1 -0.5276 -5.2817 0.1229 25 1 1.1864 -6.8052 -0.6655 26 1 1.7544 -5.0518 0.9104 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3634 0.8898 0.5142 30 1 1.9718 2.1211 0.0004 31 1 5.6584 1.0777 -0.0004 32 1 7.6319 4.0082 -1.1832 33 1 7.0178 2.3376 -1.2028 34 1 6.1784 3.6052 -2.1284 35 1 7.7200 3.6636 1.1082 36 1 6.5069 2.4917 1.6790 37 1 6.8622 4.5716 3.1794 38 1 5.1735 4.2411 2.6997 39 1 5.4546 6.5859 2.1667 40 1 7.0984 6.3152 1.5029 41 1 2.5849 -3.1046 0.5128 42 1 0.8916 -2.5560 0.5136 43 1 0.8477 -5.5760 -3.0906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411322645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -14.614140 kcal Electronic energy + Delta-G solvation = -28104.878465 eV Core-core repulsion = 24086.943260 eV Total energy + Delta-G solvation = -4017.935204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.01522 -39.85811 -37.30958 -36.85405 -36.10681 -35.02006 -33.43409 -32.72355 -31.46458 -31.11334 -27.45001 -27.24362 -26.46242 -24.93977 -23.04936 -22.38723 -21.51902 -19.87677 -19.54829 -18.67377 -17.45310 -17.15553 -17.00640 -16.52516 -15.97548 -15.74198 -15.38089 -15.24822 -14.78516 -14.54509 -14.46559 -14.14327 -13.83435 -13.40830 -13.31669 -13.13707 -12.79126 -12.62133 -12.44624 -12.34645 -12.29524 -12.26262 -12.16741 -12.02119 -11.90031 -11.61141 -11.57803 -11.26963 -10.96490 -10.82446 -10.62891 -10.54903 -10.06660 -9.99689 -9.66249 -9.61551 -8.81255 -8.06889 -7.56473 -6.29034 -4.32431 -0.32507 2.04874 2.21139 2.45836 2.74674 3.12001 3.19849 3.20541 3.25868 3.46143 3.56338 3.82096 3.87274 4.08261 4.15777 4.18709 4.24390 4.44467 4.52476 4.91893 4.99021 5.00455 5.13140 5.16820 5.24392 5.30856 5.33874 5.44123 5.56603 5.63798 5.78154 6.02161 6.11105 6.30377 6.39859 6.46852 6.54597 6.68117 7.25308 7.27689 7.44918 7.79723 8.01355 8.27745 8.48923 8.76263 9.25864 10.83486 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.002612 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.322270 B =10716.085312 C =10869.409487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.097 3.903 3 C -0.287 4.287 4 C 0.265 3.735 5 N -0.619 5.619 6 C 0.542 3.458 7 O -0.472 6.472 8 C -0.560 4.560 9 C -0.124 4.124 10 C -0.108 4.108 11 C -0.121 4.121 12 C -0.593 4.593 13 S 2.410 3.590 14 O -0.884 6.884 15 O -0.930 6.930 16 N -0.315 5.315 17 N -0.315 5.315 18 C 0.232 3.768 19 C -0.542 4.542 20 H 0.081 0.919 21 C 0.079 3.921 22 N -0.886 5.886 23 Si 0.873 3.127 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.264 1.264 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.164 0.836 31 H 0.411 0.589 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.256 18.750 11.699 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C -0.318 4.318 4 C 0.012 3.988 5 N -0.268 5.268 6 C 0.324 3.676 7 O -0.343 6.343 8 C -0.650 4.650 9 C -0.183 4.183 10 C -0.146 4.146 11 C -0.160 4.160 12 C -0.723 4.723 13 S 2.587 3.413 14 O -0.881 6.881 15 O -0.927 6.927 16 N -0.146 5.146 17 N -0.097 5.097 18 C 0.113 3.887 19 C -0.580 4.580 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.523 5.523 23 Si 0.699 3.301 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.188 1.188 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.182 0.818 31 H 0.247 0.753 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.589 18.298 10.903 24.249 hybrid contribution 0.428 -0.928 1.061 1.473 sum 12.017 17.370 11.964 24.275 Atomic orbital electron populations 1.20370 0.87661 1.02796 1.03591 1.21080 0.94998 0.86905 1.00449 1.21322 0.89620 1.00093 1.20786 1.18922 0.87087 0.89527 1.03224 1.42229 1.07673 1.04548 1.72314 1.19103 0.88734 0.82008 0.77804 1.90953 1.24758 1.72798 1.45753 1.30529 1.04551 1.24533 1.05382 1.21593 0.98871 1.04484 0.93305 1.22164 1.00125 1.02611 0.89696 1.22213 1.04816 0.89764 0.99164 1.30716 1.14022 1.05813 1.21717 1.09063 0.76721 0.77155 0.78371 1.93741 1.25092 1.83435 1.85798 1.93608 1.75871 1.69217 1.53955 1.77251 0.99511 1.08465 1.29337 1.48532 1.01192 1.07075 1.52931 1.20008 0.95311 0.73657 0.99767 1.21169 1.47465 0.99009 0.90340 0.90108 1.24812 0.94462 0.97449 0.95811 1.69879 1.45554 1.18176 1.18660 0.86898 0.79451 0.80977 0.82775 1.19582 1.20490 1.18828 0.89975 0.91086 0.90506 0.81825 0.75329 0.89438 0.89965 0.90425 0.88295 0.88421 0.88013 0.89121 0.84176 0.84389 0.93218 0.93592 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 10.11 36.00 0.36 -1.05 16 2 C 0.10 1.97 6.92 -82.28 -0.57 1.40 16 3 C -0.29 -5.75 9.52 -39.83 -0.38 -6.13 16 4 C 0.27 5.13 8.11 -154.39 -1.25 3.88 16 5 N -0.62 -8.84 5.08 -11.13 -0.06 -8.90 16 6 C 0.54 7.29 6.46 -10.98 -0.07 7.22 16 7 O -0.47 -8.16 11.08 -18.65 -0.21 -8.36 16 8 C -0.56 -4.91 0.93 -91.16 -0.08 -4.99 16 9 C -0.12 -0.92 7.82 37.15 0.29 -0.63 16 10 C -0.11 -0.55 5.46 -25.66 -0.14 -0.69 16 11 C -0.12 -0.59 6.48 -25.19 -0.16 -0.75 16 12 C -0.59 -3.04 7.30 38.24 0.28 -2.76 16 13 S 2.41 23.72 5.78 -107.50 -0.62 23.10 16 14 O -0.88 -12.91 15.22 -67.20 -1.02 -13.93 16 15 O -0.93 -11.05 17.25 -57.71 -1.00 -12.04 16 16 N -0.32 -6.93 12.59 31.44 0.40 -6.54 16 17 N -0.32 -7.16 3.59 -58.33 -0.21 -7.37 16 18 C 0.23 5.48 5.06 -5.20 -0.03 5.45 16 19 C -0.54 -15.02 9.94 -34.44 -0.34 -15.36 16 20 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 21 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 22 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 23 Si 0.87 19.89 27.47 -169.99 -4.67 15.22 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 27 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.07 1.12 7.07 -51.93 -0.37 0.76 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.16 3.22 5.92 -52.48 -0.31 2.91 16 31 H 0.41 4.54 8.01 -40.82 -0.33 4.21 16 32 H 0.09 0.45 8.02 -51.93 -0.42 0.03 16 33 H 0.08 0.50 7.46 -51.93 -0.39 0.12 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.24 7.81 -51.93 -0.41 -0.17 16 36 H 0.10 0.50 7.54 -51.93 -0.39 0.11 16 37 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.14 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 1.18 7.20 -51.93 -0.37 0.81 16 42 H 0.05 1.00 6.47 -51.93 -0.34 0.66 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -38.26 361.20 -9.22 -47.48 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.86 Total: 3.63 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.19 Total: -12.34 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.90 Total: -48.20 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -2.22 Total: -34.34 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.67 Total: 15.22 kcal Atomic # 16 Polarization: 23.72 SS G_CDS: -0.62 Total: 23.10 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.26 -9.22 -47.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411322645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.866 kcal (2) G-P(sol) polarization free energy of solvation -38.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds