Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35245 * 126.07071 * 2 1 4 4 C 1.40404 * 107.86826 * 180.02562 * 3 2 1 5 5 N 1.40155 * 125.97199 * 180.02562 * 4 3 2 6 6 C 1.34781 * 120.00154 * 359.97438 * 5 4 3 7 7 O 1.21297 * 119.99961 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00316 * 180.02562 * 6 5 4 9 9 C 1.52995 * 110.28368 * 57.88268 * 8 6 5 10 10 C 1.54171 * 110.31669 * 295.66310 * 8 6 5 11 11 C 1.53880 * 108.70426 * 269.00127 * 10 8 6 12 12 C 1.55047 * 106.62283 * 312.82347 * 11 10 8 13 13 S 1.82910 * 110.32156 * 180.02562 * 8 6 5 14 14 O 1.42102 * 109.35416 * 3.37962 * 13 8 6 15 15 O 1.42107 * 109.35444 * 230.17932 * 13 8 6 16 16 N 1.31218 * 108.05386 * 0.26050 * 4 3 2 17 17 N 1.34970 * 126.07185 * 180.02562 * 2 1 3 18 18 C 1.46493 * 125.97259 * 359.97438 * 17 2 1 19 19 C 1.50704 * 109.47408 * 89.99384 * 18 17 2 20 20 H 1.07997 * 119.99804 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99850 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99432 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00495 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46975 * 89.99341 * 23 21 19 25 25 H 1.48490 * 109.47439 * 209.99872 * 23 21 19 26 26 H 1.48501 * 109.46867 * 330.00110 * 23 21 19 27 27 H 1.09004 * 109.46777 * 89.97523 * 1 2 3 28 28 H 1.08994 * 109.47288 * 209.97156 * 1 2 3 29 29 H 1.09004 * 109.47635 * 329.97646 * 1 2 3 30 30 H 1.08003 * 126.05952 * 0.02562 * 3 2 1 31 31 H 0.97000 * 120.00197 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47351 * 182.11563 * 9 8 6 33 33 H 1.09002 * 109.47509 * 302.11750 * 9 8 6 34 34 H 1.09004 * 109.46919 * 62.11264 * 9 8 6 35 35 H 1.09003 * 109.64318 * 149.15216 * 10 8 6 36 36 H 1.08998 * 109.64398 * 28.85897 * 10 8 6 37 37 H 1.09000 * 110.02434 * 193.52750 * 11 10 8 38 38 H 1.08998 * 110.01939 * 72.11461 * 11 10 8 39 39 H 1.08999 * 110.78520 * 160.70277 * 12 11 10 40 40 H 1.09002 * 110.78994 * 283.96773 * 12 11 10 41 41 H 1.09001 * 109.47205 * 209.99245 * 18 17 2 42 42 H 1.09004 * 109.47491 * 329.99651 * 18 17 2 43 43 H 0.97003 * 119.99088 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0006 5 7 4.7734 1.4749 -0.0003 6 6 4.6366 2.8158 0.0001 7 8 3.5301 3.3125 0.0007 8 6 5.8585 3.6979 -0.0001 9 6 6.7346 3.3901 -1.2160 10 6 6.6595 3.5032 1.3027 11 6 6.1644 4.5228 2.3435 12 6 6.1001 5.8949 1.6245 13 16 5.3695 5.4604 0.0014 14 8 3.9540 5.5564 0.0814 15 8 6.0703 6.1444 -1.0284 16 7 3.6336 -0.6576 -0.0066 17 7 2.3016 -1.0909 -0.0005 18 6 1.8500 -2.4845 -0.0006 19 6 1.6945 -2.9621 -1.4214 20 1 1.9109 -2.2945 -2.2423 21 6 1.2770 -4.2518 -1.6734 22 7 1.1418 -4.6687 -2.9134 23 14 0.9034 -5.4069 -0.2537 24 1 -0.5276 -5.2817 0.1229 25 1 1.1864 -6.8052 -0.6655 26 1 1.7544 -5.0518 0.9104 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3634 0.8898 0.5142 30 1 1.9718 2.1211 0.0004 31 1 5.6584 1.0777 -0.0004 32 1 7.6319 4.0082 -1.1832 33 1 7.0178 2.3376 -1.2028 34 1 6.1784 3.6052 -2.1284 35 1 7.7200 3.6636 1.1082 36 1 6.5069 2.4917 1.6790 37 1 6.8622 4.5716 3.1794 38 1 5.1735 4.2411 2.6997 39 1 5.4546 6.5859 2.1667 40 1 7.0984 6.3152 1.5029 41 1 2.5849 -3.1046 0.5128 42 1 0.8916 -2.5560 0.5136 43 1 0.8477 -5.5760 -3.0906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411322645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -43.872796 kcal Electronic energy + Delta-G solvation = -28106.147215 eV Core-core repulsion = 24086.943260 eV Total energy + Delta-G solvation = -4019.203955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.45270 -41.09353 -38.12964 -37.53945 -36.95254 -36.43000 -35.26190 -33.66891 -32.84779 -32.80040 -29.07928 -27.94488 -27.89908 -25.86487 -24.54209 -23.36422 -22.54418 -21.30727 -20.83596 -19.58934 -19.25057 -18.45541 -17.79171 -17.63500 -17.30966 -16.74774 -16.66214 -16.40500 -16.13979 -15.60994 -15.41340 -15.20948 -14.95398 -14.69260 -14.49760 -14.08162 -13.94964 -13.79917 -13.74726 -13.59788 -13.45130 -13.24826 -13.09198 -13.01543 -12.87087 -12.76660 -12.54098 -12.52593 -12.28789 -11.99910 -11.85004 -11.65899 -11.61535 -11.47233 -11.16674 -10.90350 -10.81718 -9.65468 -9.17576 -8.41446 -6.53038 -1.02277 0.76544 1.15644 1.28954 1.34934 1.38695 1.47952 1.54818 2.06217 2.11939 2.26224 2.63784 2.90811 2.94929 3.27108 3.41472 3.54070 3.66810 3.79564 3.90517 4.06066 4.14519 4.35581 4.49480 4.50686 4.57547 4.61288 4.68214 4.70390 4.76704 4.80843 4.93911 4.97194 4.98988 5.06619 5.08487 5.12246 5.17048 5.22057 5.81053 5.95935 6.10513 6.33227 6.50617 6.81688 6.98419 7.11014 8.75393 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.002612 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.322270 B =10716.085312 C =10869.409487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.091 3.909 3 C -0.303 4.303 4 C 0.274 3.726 5 N -0.611 5.611 6 C 0.539 3.461 7 O -0.512 6.512 8 C -0.545 4.545 9 C -0.132 4.132 10 C -0.107 4.107 11 C -0.125 4.125 12 C -0.553 4.553 13 S 2.382 3.618 14 O -0.949 6.949 15 O -0.962 6.962 16 N -0.348 5.348 17 N -0.340 5.340 18 C 0.241 3.759 19 C -0.552 4.552 20 H 0.022 0.978 21 C 0.021 3.979 22 N -0.938 5.938 23 Si 0.953 3.047 24 H -0.251 1.251 25 H -0.279 1.279 26 H -0.242 1.242 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.165 0.835 31 H 0.427 0.573 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.074 0.926 39 H 0.155 0.845 40 H 0.176 0.824 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.297 19.094 15.242 28.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.039 4.039 3 C -0.333 4.333 4 C 0.020 3.980 5 N -0.261 5.261 6 C 0.323 3.677 7 O -0.384 6.384 8 C -0.636 4.636 9 C -0.190 4.190 10 C -0.145 4.145 11 C -0.163 4.163 12 C -0.687 4.687 13 S 2.567 3.433 14 O -0.946 6.946 15 O -0.959 6.959 16 N -0.179 5.179 17 N -0.123 5.123 18 C 0.122 3.878 19 C -0.590 4.590 20 H 0.040 0.960 21 C -0.179 4.179 22 N -0.577 5.577 23 Si 0.773 3.227 24 H -0.175 1.175 25 H -0.204 1.204 26 H -0.166 1.166 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.182 0.818 31 H 0.266 0.734 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.120 0.880 37 H 0.158 0.842 38 H 0.093 0.907 39 H 0.173 0.827 40 H 0.194 0.806 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.636 18.681 14.402 27.246 hybrid contribution -0.107 -0.875 -0.095 0.886 sum 13.529 17.806 14.308 26.548 Atomic orbital electron populations 1.20519 0.85199 1.04828 1.03808 1.21731 0.96711 0.86373 0.99035 1.21492 0.90279 1.00070 1.21506 1.19255 0.88608 0.89260 1.00898 1.42353 1.07068 1.04556 1.72150 1.20004 0.89959 0.81715 0.75990 1.90938 1.27063 1.73359 1.47076 1.30423 1.02755 1.21999 1.08427 1.21760 0.99419 1.06134 0.91669 1.22400 1.01727 1.03076 0.87331 1.22370 1.05137 0.88870 0.99958 1.30515 1.15500 1.06753 1.15917 1.09539 0.75822 0.77462 0.80526 1.93669 1.29170 1.84368 1.87360 1.93558 1.75605 1.69780 1.56921 1.77164 0.99698 1.09686 1.31314 1.48456 1.01864 1.07084 1.54876 1.19795 0.96558 0.74477 0.97009 1.21252 1.47860 0.98731 0.91163 0.95981 1.25862 0.93672 0.99244 0.99120 1.70046 1.46874 1.19053 1.21690 0.85655 0.80509 0.77603 0.78917 1.17472 1.20378 1.16567 0.90511 0.90068 0.87460 0.81804 0.73435 0.86354 0.88503 0.92660 0.84042 0.88005 0.84182 0.90741 0.82676 0.80597 0.92996 0.90898 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.79 10.11 71.23 0.72 -2.07 16 2 C 0.09 3.79 6.92 41.38 0.29 4.08 16 3 C -0.30 -12.45 9.52 22.11 0.21 -12.24 16 4 C 0.27 10.83 8.11 133.33 1.08 11.91 16 5 N -0.61 -17.40 5.08 -307.51 -1.56 -18.96 16 6 C 0.54 14.60 6.46 87.66 0.57 15.17 16 7 O -0.51 -18.49 11.08 20.05 0.22 -18.27 16 8 C -0.55 -8.78 0.93 -11.15 -0.01 -8.79 16 9 C -0.13 -1.75 7.82 71.98 0.56 -1.18 16 10 C -0.11 -0.67 5.46 31.29 0.17 -0.50 16 11 C -0.12 -0.67 6.48 31.59 0.20 -0.46 16 12 C -0.55 -3.51 7.30 72.68 0.53 -2.98 16 13 S 2.38 45.88 5.78 -56.49 -0.33 45.55 16 14 O -0.95 -29.40 15.22 -118.41 -1.80 -31.20 16 15 O -0.96 -22.76 17.25 -127.49 -2.20 -24.96 16 16 N -0.35 -15.63 12.59 -54.46 -0.69 -16.32 16 17 N -0.34 -15.73 3.59 -338.45 -1.22 -16.95 16 18 C 0.24 11.39 5.06 85.64 0.43 11.82 16 19 C -0.55 -31.66 9.94 25.60 0.25 -31.40 16 20 H 0.02 1.47 8.06 -2.91 -0.02 1.45 16 21 C 0.02 1.16 5.47 84.65 0.46 1.62 16 22 N -0.94 -57.16 13.96 21.45 0.30 -56.86 16 23 Si 0.95 40.40 27.47 68.60 1.88 42.28 16 24 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 27 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 28 H 0.08 2.47 7.07 -2.39 -0.02 2.45 16 29 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 30 H 0.16 6.72 5.92 -2.91 -0.02 6.71 16 31 H 0.43 9.03 8.01 -92.71 -0.74 8.28 16 32 H 0.12 0.85 8.02 -2.39 -0.02 0.83 16 33 H 0.10 0.98 7.46 -2.39 -0.02 0.97 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.14 -0.21 7.81 -2.39 -0.02 -0.23 16 36 H 0.10 0.66 7.54 -2.39 -0.02 0.64 16 37 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.18 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.05 2.41 7.20 -2.39 -0.02 2.40 16 42 H 0.07 3.03 6.47 -2.38 -0.02 3.02 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -91.41 361.20 0.34 -91.07 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.25 Total: 19.64 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 5.47 Total: -15.02 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -3.16 Total: -109.09 kcal Atomic # 8 Polarization: -70.65 SS G_CDS: -3.78 Total: -74.43 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.88 Total: 42.28 kcal Atomic # 16 Polarization: 45.88 SS G_CDS: -0.33 Total: 45.55 kcal Total: -91.41 0.34 -91.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411322645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.194 kcal (2) G-P(sol) polarization free energy of solvation -91.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds