Wall clock time and date at job start Sat Apr 11 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38044 * 126.29605 * 2 1 4 4 C 1.47428 * 126.41409 * 359.97438 * 3 2 1 5 5 O 1.21609 * 119.99826 * 0.02562 * 4 3 2 6 6 N 1.34768 * 120.00396 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00168 * 180.02562 * 6 4 3 8 8 C 1.52595 * 109.24067 * 154.99938 * 7 6 4 9 9 C 1.53041 * 109.89880 * 190.23459 * 8 7 6 10 10 S 1.81664 * 108.99789 * 296.40409 * 9 8 7 11 11 O 1.42099 * 108.66292 * 168.63001 * 10 9 8 12 12 O 1.42106 * 108.66529 * 299.87339 * 10 9 8 13 13 C 1.81669 * 101.30753 * 54.30064 * 10 9 8 14 14 C 1.52400 * 109.09098 * 276.18297 * 7 6 4 15 15 C 1.41289 * 107.17452 * 180.24971 * 3 2 1 16 16 N 1.30449 * 108.02049 * 359.61119 * 15 3 2 17 17 N 1.34265 * 126.29160 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75116 * 359.95779 * 17 2 1 19 19 C 1.50701 * 109.47200 * 89.99860 * 18 17 2 20 20 H 1.08003 * 119.99927 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00147 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00211 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47490 * 89.99499 * 23 21 19 25 25 H 1.48499 * 109.47382 * 209.99889 * 23 21 19 26 26 H 1.48500 * 109.47048 * 330.00058 * 23 21 19 27 27 H 1.09000 * 109.47432 * 89.97473 * 1 2 3 28 28 H 1.09003 * 109.47492 * 209.97917 * 1 2 3 29 29 H 1.09002 * 109.47613 * 329.98038 * 1 2 3 30 30 H 0.97008 * 119.99960 * 0.02562 * 6 4 3 31 31 H 1.08999 * 109.20753 * 35.57892 * 7 6 4 32 32 H 1.09002 * 109.38625 * 70.12864 * 8 7 6 33 33 H 1.09006 * 109.38226 * 310.33881 * 8 7 6 34 34 H 1.09002 * 109.54739 * 56.26351 * 9 8 7 35 35 H 1.08999 * 109.54601 * 176.45454 * 9 8 7 36 36 H 1.08997 * 109.54979 * 65.55859 * 13 10 9 37 37 H 1.09001 * 109.54929 * 185.74912 * 13 10 9 38 38 H 1.09003 * 109.41896 * 49.52055 * 14 7 6 39 39 H 1.09004 * 109.33065 * 289.74001 * 14 7 6 40 40 H 1.07994 * 125.99375 * 179.74116 * 15 3 2 41 41 H 1.08995 * 109.47065 * 210.00294 * 18 17 2 42 42 H 1.09002 * 109.47090 * 330.00108 * 18 17 2 43 43 H 0.97001 * 120.00505 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.7999 3.5106 -0.0010 7 6 2.3645 4.9094 -0.0009 8 6 3.4619 5.7777 0.6074 9 6 2.9322 7.1929 0.8499 10 16 2.5032 7.9453 -0.7470 11 8 1.7733 9.1403 -0.5051 12 8 3.6714 7.9954 -1.5546 13 6 1.3711 6.7017 -1.4342 14 6 2.0676 5.3391 -1.4327 15 6 3.6590 0.6498 -0.0059 16 7 3.6339 -0.6545 -0.0007 17 7 2.3016 -1.0822 -0.0005 18 6 1.8499 -2.4759 -0.0002 19 6 1.6942 -2.9537 -1.4210 20 1 1.9104 -2.2862 -2.2420 21 6 1.2756 -4.2430 -1.6727 22 7 1.0117 -5.0558 -0.6729 23 14 1.0832 -4.8356 -3.4337 24 1 2.3639 -5.4249 -3.9005 25 1 0.0135 -5.8637 -3.4960 26 1 0.7194 -3.6893 -4.3047 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 3.7463 3.2972 -0.0013 31 1 1.4588 5.0030 0.5983 32 1 4.3098 5.8209 -0.0763 33 1 3.7828 5.3442 1.5547 34 1 2.0451 7.1469 1.4816 35 1 3.6997 7.7903 1.3418 36 1 0.4700 6.6515 -0.8230 37 1 1.1047 6.9755 -2.4550 38 1 1.4198 4.6010 -1.9056 39 1 3.0022 5.4098 -1.9893 40 1 4.5448 1.2674 -0.0113 41 1 2.5848 -3.0958 0.5132 42 1 0.8916 -2.5471 0.5142 43 1 0.7176 -5.9630 -0.8500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433615621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:21 Heat of formation + Delta-G solvation = -45.958707 kcal Electronic energy + Delta-G solvation = -27313.179257 eV Core-core repulsion = 23293.884850 eV Total energy + Delta-G solvation = -4019.294407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.90974 -39.54643 -37.58095 -36.95916 -36.39091 -34.01997 -33.29908 -32.33054 -32.08389 -31.17547 -28.10722 -26.90864 -26.30591 -24.15864 -23.52281 -22.28148 -21.27493 -20.01568 -19.29840 -18.99517 -17.53215 -17.06161 -16.80078 -16.74378 -16.33773 -16.03392 -15.31363 -15.14909 -14.66450 -14.55722 -14.25736 -14.19636 -13.92288 -13.50808 -13.44243 -13.19161 -12.79143 -12.61481 -12.51551 -12.49036 -12.37694 -12.30462 -12.16589 -11.98964 -11.84851 -11.54713 -11.44751 -11.17027 -11.10979 -10.92885 -10.47336 -10.41647 -10.26415 -9.98909 -9.53915 -9.21219 -8.75435 -8.66509 -8.00987 -6.38082 -4.46186 -0.38847 2.07704 2.24860 2.70863 2.90136 3.15149 3.21777 3.23940 3.25941 3.36446 3.67909 3.76051 3.98918 4.08929 4.20376 4.25987 4.45709 4.47113 4.70637 4.76722 4.95561 5.03993 5.08985 5.15554 5.19215 5.31382 5.40173 5.46140 5.62561 5.69626 5.78070 5.85835 6.05315 6.31133 6.42025 6.49730 6.72823 6.85024 7.08480 7.50413 7.56772 7.71319 7.72658 8.29744 8.45255 8.59143 9.21020 10.70137 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025661 B = 0.002172 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.885777 B =12885.797064 C =13144.633552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.167 3.833 3 C -0.336 4.336 4 C 0.607 3.393 5 O -0.553 6.553 6 N -0.729 5.729 7 C 0.132 3.868 8 C -0.121 4.121 9 C -0.600 4.600 10 S 2.414 3.586 11 O -0.945 6.945 12 O -0.936 6.936 13 C -0.596 4.596 14 C -0.125 4.125 15 C 0.058 3.942 16 N -0.295 5.295 17 N -0.313 5.313 18 C 0.251 3.749 19 C -0.541 4.541 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.908 3.092 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.271 1.271 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.401 0.599 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.176 0.824 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 21.995 3.504 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.030 3.970 3 C -0.351 4.351 4 C 0.398 3.602 5 O -0.432 6.432 6 N -0.381 5.381 7 C 0.026 3.974 8 C -0.159 4.159 9 C -0.729 4.729 10 S 2.596 3.404 11 O -0.942 6.942 12 O -0.933 6.933 13 C -0.726 4.726 14 C -0.165 4.165 15 C -0.129 4.129 16 N -0.114 5.114 17 N -0.090 5.090 18 C 0.134 3.866 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.196 1.196 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.236 0.764 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.193 0.807 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.748 21.520 3.208 21.930 hybrid contribution -0.312 -0.571 -0.586 0.876 sum 2.436 20.949 2.622 21.252 Atomic orbital electron populations 1.20575 0.86794 1.03810 1.03957 1.21487 0.94969 0.86545 0.94036 1.19617 0.93174 0.92316 1.29993 1.17329 0.84959 0.83912 0.74036 1.90698 1.16639 1.84382 1.51497 1.45668 1.10099 1.04361 1.77988 1.20937 0.98598 0.81960 0.95891 1.21561 0.98743 0.91256 1.04387 1.30174 1.12155 1.07734 1.22883 1.08193 0.76943 0.76926 0.78385 1.93600 1.73317 1.42016 1.85248 1.93597 1.46941 1.86539 1.66207 1.30162 1.15658 1.12775 1.14031 1.21723 1.02043 0.94461 0.98229 1.23731 0.96304 0.92655 1.00225 1.77155 0.98621 1.12289 1.23376 1.49397 1.02479 1.08360 1.48736 1.19869 0.96427 0.70847 0.99495 1.21233 1.47533 0.98190 0.90948 0.91665 1.24923 0.94397 0.95992 0.98337 1.69909 1.44411 1.07194 1.31148 0.86317 0.78121 0.78654 0.83395 1.20224 1.20765 1.19594 0.89806 0.90835 0.88826 0.76377 0.88351 0.88963 0.88413 0.84499 0.84301 0.84502 0.84466 0.88374 0.89470 0.80702 0.92488 0.92531 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.57 36.00 0.34 -1.25 16 2 C 0.17 3.21 7.01 -81.60 -0.57 2.64 16 3 C -0.34 -5.61 6.13 -105.07 -0.64 -6.25 16 4 C 0.61 8.71 7.68 -12.52 -0.10 8.61 16 5 O -0.55 -9.18 14.50 5.27 0.08 -9.10 16 6 N -0.73 -7.05 5.05 -55.38 -0.28 -7.33 16 7 C 0.13 1.00 2.19 -68.44 -0.15 0.85 16 8 C -0.12 -0.60 5.19 -26.92 -0.14 -0.74 16 9 C -0.60 -2.49 6.34 37.18 0.24 -2.25 16 10 S 2.41 16.27 5.30 -107.50 -0.57 15.70 16 11 O -0.94 -9.79 18.10 -57.82 -1.05 -10.83 16 12 O -0.94 -9.43 17.95 -57.82 -1.04 -10.47 16 13 C -0.60 -3.47 6.35 37.18 0.24 -3.24 16 14 C -0.13 -0.95 5.27 -27.02 -0.14 -1.09 16 15 C 0.06 0.93 11.50 -16.98 -0.20 0.73 16 16 N -0.29 -6.04 12.50 30.86 0.39 -5.65 16 17 N -0.31 -6.79 3.56 -57.78 -0.21 -7.00 16 18 C 0.25 6.06 5.97 -5.19 -0.03 6.03 16 19 C -0.54 -14.24 9.39 -34.44 -0.32 -14.56 16 20 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -24.17 13.29 55.43 0.74 -23.43 16 23 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.07 1.23 7.05 -51.93 -0.37 0.87 16 29 H 0.09 1.50 6.50 -51.93 -0.34 1.16 16 30 H 0.40 2.93 7.55 -40.82 -0.31 2.62 16 31 H 0.10 0.79 7.53 -51.93 -0.39 0.40 16 32 H 0.09 0.39 8.01 -51.93 -0.42 -0.02 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.14 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.14 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.14 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 39 H 0.09 0.59 8.01 -51.93 -0.42 0.17 16 40 H 0.18 1.90 7.50 -52.49 -0.39 1.51 16 41 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.06 1.36 7.02 -51.93 -0.36 0.99 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -35.83 369.48 -8.88 -44.71 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.92 Total: 1.22 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.57 Total: -8.83 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.64 Total: -43.41 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -2.01 Total: -30.41 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 16.27 SS G_CDS: -0.57 Total: 15.70 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.83 -8.88 -44.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433615621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.246 kcal (2) G-P(sol) polarization free energy of solvation -35.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds