Wall clock time and date at job start Sat Apr 11 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31689 * 119.63571 * 2 1 4 4 C 1.31856 * 121.95497 * 179.97438 * 3 2 1 5 5 C 1.39001 * 120.98126 * 359.97438 * 4 3 2 6 6 N 1.39904 * 120.42505 * 180.02562 * 5 4 3 7 7 C 1.34781 * 120.00257 * 214.69464 * 6 5 4 8 8 O 1.21600 * 119.99674 * 355.46428 * 7 6 5 9 9 C 1.47505 * 119.99943 * 175.46017 * 7 6 5 10 10 C 1.39678 * 120.19736 * 0.02562 * 9 7 6 11 11 C 1.37831 * 119.91475 * 180.02562 * 10 9 7 12 12 C 1.38572 * 120.32696 * 359.97438 * 11 10 9 13 13 C 1.38033 * 120.40532 * 0.02562 * 12 11 10 14 14 C 1.38841 * 120.06996 * 359.71837 * 13 12 11 15 15 O 1.35510 * 120.16017 * 180.29729 * 14 13 12 16 16 C 1.34812 * 117.00491 * 5.96641 * 15 14 13 17 17 H 1.08008 * 119.99558 * 5.43726 * 16 15 14 18 18 C 1.38698 * 120.00553 * 185.42772 * 16 15 14 19 19 N 1.31516 * 120.00128 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99790 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46906 * 89.99960 * 20 18 16 22 22 H 1.48493 * 109.47428 * 209.99881 * 20 18 16 23 23 H 1.48500 * 109.47029 * 330.00100 * 20 18 16 24 24 C 1.39011 * 119.15332 * 359.70657 * 5 4 3 25 25 C 1.39544 * 119.63009 * 179.97438 * 2 1 3 26 26 C 1.47856 * 120.52833 * 0.02562 * 25 2 1 27 27 N 1.34769 * 120.00102 * 173.81622 * 26 25 2 28 28 O 1.21550 * 119.99595 * 353.81335 * 26 25 2 29 29 H 1.08996 * 109.47510 * 262.91456 * 1 2 3 30 30 H 1.08997 * 109.47135 * 22.91525 * 1 2 3 31 31 H 1.08997 * 109.47232 * 142.90863 * 1 2 3 32 32 H 1.08006 * 119.50898 * 180.02562 * 4 3 2 33 33 H 0.96998 * 119.99795 * 34.69590 * 6 5 4 34 34 H 1.07995 * 120.04551 * 0.02562 * 10 9 7 35 35 H 1.07998 * 119.83692 * 179.97438 * 11 10 9 36 36 H 1.08000 * 119.79925 * 179.97438 * 12 11 10 37 37 H 1.07995 * 119.96655 * 180.02562 * 13 12 11 38 38 H 0.97002 * 120.00067 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.88689 * 180.31924 * 24 5 4 40 40 H 0.97007 * 119.99803 * 359.97438 * 27 26 25 41 41 H 0.96998 * 119.99810 * 179.72591 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1446 0.0000 4 6 3.4757 1.1980 0.0005 5 6 4.2389 0.0362 0.0016 6 7 5.6361 0.1064 0.0026 7 6 6.3579 -0.8185 -0.6608 8 8 5.7997 -1.7599 -1.1908 9 6 7.8249 -0.6889 -0.7439 10 6 8.4703 0.3905 -0.1362 11 6 9.8413 0.5063 -0.2180 12 6 10.5843 -0.4439 -0.9003 13 6 9.9602 -1.5159 -1.5058 14 6 8.5806 -1.6517 -1.4293 15 8 7.9666 -2.7066 -2.0179 16 6 8.7601 -3.6544 -2.5562 17 1 9.8313 -3.5974 -2.4299 18 6 8.2010 -4.7027 -3.2718 19 7 8.9750 -5.6275 -3.7964 20 14 6.3484 -4.8010 -3.4904 21 1 5.9567 -4.0761 -4.7259 22 1 5.9377 -6.2238 -3.6001 23 1 5.6782 -4.1812 -2.3192 24 6 3.5960 -1.1963 0.0084 25 6 2.1969 -1.2130 0.0005 26 6 1.4612 -2.4955 0.0005 27 7 2.1324 -3.6574 -0.1247 28 8 0.2510 -2.5018 0.1135 29 1 -0.3634 -0.1268 1.0198 30 1 -0.3633 0.9465 -0.4001 31 1 -0.3633 -0.8197 -0.6197 32 1 3.9692 2.1587 0.0009 33 1 6.0855 0.8207 0.4809 34 1 7.8959 1.1335 0.3971 35 1 10.3390 1.3416 0.2520 36 1 11.6581 -0.3446 -0.9594 37 1 10.5462 -2.2524 -2.0353 38 1 8.5840 -6.3605 -4.2972 39 1 4.1614 -2.1165 0.0145 40 1 3.0982 -3.6523 -0.2151 41 1 1.6501 -4.4990 -0.1206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438402630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:27 Heat of formation + Delta-G solvation = -26.242695 kcal Electronic energy + Delta-G solvation = -28983.113508 eV Core-core repulsion = 24829.230101 eV Total energy + Delta-G solvation = -4153.883408 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14904 -40.02286 -39.07667 -38.31596 -36.73897 -35.09946 -34.11278 -32.62806 -32.26116 -31.93210 -30.43726 -29.39133 -27.28868 -25.47220 -24.93166 -23.75798 -22.45001 -21.62578 -20.93788 -20.32269 -18.68228 -18.11007 -17.90903 -17.21762 -16.57582 -16.39461 -16.22841 -15.75782 -15.32216 -15.02433 -14.75622 -14.53660 -14.34517 -14.04414 -13.95004 -13.85134 -13.67200 -13.34097 -13.10401 -12.59567 -12.53161 -12.44530 -12.35373 -12.06914 -11.60873 -11.45294 -11.00988 -10.90325 -10.72205 -10.37489 -10.21660 -9.92608 -9.80204 -9.77551 -9.59830 -9.20964 -9.05351 -8.62617 -8.27099 -7.66728 -6.63341 -4.28491 0.49827 1.01699 1.39371 2.01484 2.71453 3.00416 3.16083 3.20714 3.24770 3.38141 3.46741 3.70476 4.17105 4.22232 4.29597 4.51274 4.53379 4.68772 4.71741 4.91442 4.94686 5.10293 5.20016 5.24448 5.47793 5.66250 5.69037 5.73261 5.75155 5.85911 5.94956 6.03743 6.17902 6.29445 6.36540 6.62133 6.66499 6.68472 6.82610 6.98076 7.18617 7.29696 7.40490 7.55892 7.76140 7.77686 8.10707 8.40433 8.70846 9.31703 10.41523 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.004201 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.878458 B = 6663.786191 C = 9066.782892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.164 3.836 3 N -0.470 5.470 4 C 0.103 3.897 5 C 0.098 3.902 6 N -0.676 5.676 7 C 0.563 3.437 8 O -0.503 6.503 9 C -0.233 4.233 10 C -0.038 4.038 11 C -0.219 4.219 12 C -0.047 4.047 13 C -0.224 4.224 14 C 0.203 3.797 15 O -0.163 6.163 16 C -0.397 4.397 17 H 0.109 0.891 18 C 0.072 3.928 19 N -0.864 5.864 20 Si 0.898 3.102 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.236 1.236 24 C -0.046 4.046 25 C -0.178 4.178 26 C 0.573 3.427 27 N -0.847 5.847 28 O -0.537 6.537 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.410 0.590 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.284 0.716 39 H 0.157 0.843 40 H 0.407 0.593 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 10.993 9.143 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.025 3.975 3 N -0.179 5.179 4 C -0.058 4.058 5 C 0.000 4.000 6 N -0.324 5.324 7 C 0.355 3.645 8 O -0.378 6.378 9 C -0.237 4.237 10 C -0.057 4.057 11 C -0.238 4.238 12 C -0.065 4.065 13 C -0.243 4.243 14 C 0.144 3.856 15 O -0.063 6.063 16 C -0.472 4.472 17 H 0.127 0.873 18 C -0.134 4.134 19 N -0.498 5.498 20 Si 0.722 3.278 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.158 1.158 24 C -0.074 4.074 25 C -0.184 4.184 26 C 0.358 3.642 27 N -0.410 5.410 28 O -0.416 6.416 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.180 0.820 33 H 0.247 0.753 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.157 0.843 38 H 0.094 0.906 39 H 0.174 0.826 40 H 0.237 0.763 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -8.273 10.916 8.618 16.183 hybrid contribution 0.920 -0.912 -0.120 1.301 sum -7.353 10.004 8.498 15.046 Atomic orbital electron populations 1.20968 0.87556 1.03609 1.03940 1.21405 0.97525 0.86499 0.92098 1.67602 1.08616 1.28379 1.13317 1.22825 0.89376 0.97257 0.96318 1.18639 0.84606 0.94497 1.02211 1.43461 1.03115 1.32110 1.53711 1.18413 0.87378 0.81409 0.77275 1.90836 1.71704 1.30386 1.44845 1.18589 0.90736 1.01063 1.13357 1.20760 0.94754 0.94606 0.95596 1.20562 0.93605 1.01967 1.07639 1.21020 0.99161 0.92732 0.93636 1.21316 0.94164 1.01743 1.07073 1.18980 0.90560 0.86067 0.89952 1.83758 1.35597 1.26290 1.60633 1.20937 0.92184 1.00974 1.33059 0.87345 1.24518 1.00784 0.94052 0.94051 1.69628 1.36539 1.11827 1.31847 0.86242 0.83292 0.77080 0.81178 1.19997 1.21018 1.15842 1.22013 0.92824 0.99115 0.93457 1.20636 0.93633 0.94988 1.09136 1.17947 0.86743 0.83924 0.75567 1.43819 1.12569 1.08382 1.76280 1.90755 1.13435 1.87249 1.50127 0.90175 0.91384 0.88274 0.81991 0.75275 0.86730 0.86757 0.86624 0.84255 0.90626 0.82572 0.76259 0.76281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 8.84 36.01 0.32 -0.94 16 2 C 0.16 2.26 6.82 -82.16 -0.56 1.70 16 3 N -0.47 -6.28 10.25 -8.99 -0.09 -6.37 16 4 C 0.10 1.21 11.11 -17.26 -0.19 1.02 16 5 C 0.10 1.31 6.31 -83.60 -0.53 0.78 16 6 N -0.68 -8.66 5.29 -10.74 -0.06 -8.71 16 7 C 0.56 9.83 7.62 -12.48 -0.10 9.74 16 8 O -0.50 -10.64 12.45 -16.58 -0.21 -10.85 16 9 C -0.23 -4.13 5.89 -104.81 -0.62 -4.75 16 10 C -0.04 -0.52 9.53 -39.19 -0.37 -0.90 16 11 C -0.22 -2.96 10.02 -39.61 -0.40 -3.36 16 12 C -0.05 -0.72 10.03 -39.53 -0.40 -1.11 16 13 C -0.22 -4.29 9.12 -39.43 -0.36 -4.65 16 14 C 0.20 4.32 6.66 -38.59 -0.26 4.06 16 15 O -0.16 -4.08 6.67 -21.02 -0.14 -4.22 16 16 C -0.40 -10.55 9.90 30.90 0.31 -10.24 16 17 H 0.11 2.89 5.53 -52.48 -0.29 2.60 16 18 C 0.07 1.95 5.49 -17.52 -0.10 1.85 16 19 N -0.86 -23.78 13.96 55.48 0.77 -23.01 16 20 Si 0.90 21.29 28.62 -169.99 -4.86 16.43 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.24 -5.63 6.91 56.52 0.39 -5.24 16 24 C -0.05 -0.66 8.26 -38.67 -0.32 -0.98 16 25 C -0.18 -2.52 5.89 -104.85 -0.62 -3.14 16 26 C 0.57 8.02 7.98 -12.33 -0.10 7.92 16 27 N -0.85 -9.90 8.83 30.53 0.27 -9.63 16 28 O -0.54 -8.36 14.21 5.32 0.08 -8.29 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.10 1.30 5.88 -51.93 -0.31 1.00 16 32 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.41 3.72 6.87 -40.82 -0.28 3.44 16 34 H 0.11 1.08 6.41 -52.49 -0.34 0.74 16 35 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.14 2.81 5.72 -52.49 -0.30 2.51 16 38 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.16 2.39 4.83 -52.48 -0.25 2.14 16 40 H 0.41 4.76 6.98 -40.82 -0.28 4.47 16 41 H 0.41 3.92 8.93 -40.82 -0.36 3.56 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -32.08 350.79 -6.91 -38.99 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -3.68 Total: 13.38 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -4.28 Total: -3.01 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.90 Total: -47.72 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.27 Total: -23.36 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.86 Total: 16.43 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.08 -6.91 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438402630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.745 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds