Wall clock time and date at job start Sat Apr 11 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31689 * 119.63571 * 2 1 4 4 C 1.31856 * 121.95497 * 179.97438 * 3 2 1 5 5 C 1.39001 * 120.98126 * 359.97438 * 4 3 2 6 6 N 1.39904 * 120.42505 * 180.02562 * 5 4 3 7 7 C 1.34781 * 120.00257 * 214.69464 * 6 5 4 8 8 O 1.21600 * 119.99674 * 355.46428 * 7 6 5 9 9 C 1.47505 * 119.99943 * 175.46017 * 7 6 5 10 10 C 1.39678 * 120.19736 * 0.02562 * 9 7 6 11 11 C 1.37831 * 119.91475 * 180.02562 * 10 9 7 12 12 C 1.38572 * 120.32696 * 359.97438 * 11 10 9 13 13 C 1.38033 * 120.40532 * 0.02562 * 12 11 10 14 14 C 1.38841 * 120.06996 * 359.71837 * 13 12 11 15 15 O 1.35510 * 120.16017 * 180.29729 * 14 13 12 16 16 C 1.34812 * 117.00491 * 5.96641 * 15 14 13 17 17 H 1.08008 * 119.99558 * 5.43726 * 16 15 14 18 18 C 1.38698 * 120.00553 * 185.42772 * 16 15 14 19 19 N 1.31516 * 120.00128 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99790 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46906 * 89.99960 * 20 18 16 22 22 H 1.48493 * 109.47428 * 209.99881 * 20 18 16 23 23 H 1.48500 * 109.47029 * 330.00100 * 20 18 16 24 24 C 1.39011 * 119.15332 * 359.70657 * 5 4 3 25 25 C 1.39544 * 119.63009 * 179.97438 * 2 1 3 26 26 C 1.47856 * 120.52833 * 0.02562 * 25 2 1 27 27 N 1.34769 * 120.00102 * 173.81622 * 26 25 2 28 28 O 1.21550 * 119.99595 * 353.81335 * 26 25 2 29 29 H 1.08996 * 109.47510 * 262.91456 * 1 2 3 30 30 H 1.08997 * 109.47135 * 22.91525 * 1 2 3 31 31 H 1.08997 * 109.47232 * 142.90863 * 1 2 3 32 32 H 1.08006 * 119.50898 * 180.02562 * 4 3 2 33 33 H 0.96998 * 119.99795 * 34.69590 * 6 5 4 34 34 H 1.07995 * 120.04551 * 0.02562 * 10 9 7 35 35 H 1.07998 * 119.83692 * 179.97438 * 11 10 9 36 36 H 1.08000 * 119.79925 * 179.97438 * 12 11 10 37 37 H 1.07995 * 119.96655 * 180.02562 * 13 12 11 38 38 H 0.97002 * 120.00067 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.88689 * 180.31924 * 24 5 4 40 40 H 0.97007 * 119.99803 * 359.97438 * 27 26 25 41 41 H 0.96998 * 119.99810 * 179.72591 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1446 0.0000 4 6 3.4757 1.1980 0.0005 5 6 4.2389 0.0362 0.0016 6 7 5.6361 0.1064 0.0026 7 6 6.3579 -0.8185 -0.6608 8 8 5.7997 -1.7599 -1.1908 9 6 7.8249 -0.6889 -0.7439 10 6 8.4703 0.3905 -0.1362 11 6 9.8413 0.5063 -0.2180 12 6 10.5843 -0.4439 -0.9003 13 6 9.9602 -1.5159 -1.5058 14 6 8.5806 -1.6517 -1.4293 15 8 7.9666 -2.7066 -2.0179 16 6 8.7601 -3.6544 -2.5562 17 1 9.8313 -3.5974 -2.4299 18 6 8.2010 -4.7027 -3.2718 19 7 8.9750 -5.6275 -3.7964 20 14 6.3484 -4.8010 -3.4904 21 1 5.9567 -4.0761 -4.7259 22 1 5.9377 -6.2238 -3.6001 23 1 5.6782 -4.1812 -2.3192 24 6 3.5960 -1.1963 0.0084 25 6 2.1969 -1.2130 0.0005 26 6 1.4612 -2.4955 0.0005 27 7 2.1324 -3.6574 -0.1247 28 8 0.2510 -2.5018 0.1135 29 1 -0.3634 -0.1268 1.0198 30 1 -0.3633 0.9465 -0.4001 31 1 -0.3633 -0.8197 -0.6197 32 1 3.9692 2.1587 0.0009 33 1 6.0855 0.8207 0.4809 34 1 7.8959 1.1335 0.3971 35 1 10.3390 1.3416 0.2520 36 1 11.6581 -0.3446 -0.9594 37 1 10.5462 -2.2524 -2.0353 38 1 8.5840 -6.3605 -4.2972 39 1 4.1614 -2.1165 0.0145 40 1 3.0982 -3.6523 -0.2151 41 1 1.6501 -4.4990 -0.1206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438402630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:26 Heat of formation + Delta-G solvation = -50.114718 kcal Electronic energy + Delta-G solvation = -28984.148677 eV Core-core repulsion = 24829.230101 eV Total energy + Delta-G solvation = -4154.918576 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.26112 -41.34996 -40.35326 -39.57651 -38.18837 -36.32514 -35.18016 -34.52436 -33.28513 -33.11964 -31.65749 -30.80666 -28.37943 -27.25610 -25.96966 -25.02909 -23.62127 -22.96594 -22.10216 -21.58168 -19.91522 -19.83750 -19.09438 -18.51164 -17.87381 -17.42990 -17.35169 -16.84700 -16.61964 -16.38562 -16.14454 -15.91824 -15.78963 -15.46059 -15.33439 -15.07258 -14.90045 -14.58682 -14.32132 -14.22947 -14.04083 -13.60671 -13.42767 -13.15663 -13.06711 -12.81843 -12.60473 -12.39638 -11.99307 -11.86355 -11.61239 -11.42669 -11.01402 -10.96784 -10.86637 -10.78552 -10.40960 -9.94660 -9.36607 -9.13696 -8.57743 -6.27243 -0.52941 -0.15079 0.15050 0.65232 1.26745 1.31188 1.57478 1.63380 1.83458 1.94761 2.27382 2.37143 2.65396 2.76095 3.00755 3.12443 3.27993 3.46899 3.63594 3.70261 3.79631 4.01161 4.04601 4.24473 4.27570 4.48199 4.57765 4.64941 4.71408 4.78428 4.78851 4.94610 5.01577 5.05723 5.28345 5.28675 5.46899 5.59234 5.61400 5.69439 5.74105 5.82414 6.14306 6.14844 6.38022 6.74198 6.78405 7.08288 7.14870 7.55333 8.52369 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.004201 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.878458 B = 6663.786191 C = 9066.782892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.158 3.842 3 N -0.478 5.478 4 C 0.123 3.877 5 C 0.085 3.915 6 N -0.649 5.649 7 C 0.560 3.440 8 O -0.545 6.545 9 C -0.232 4.232 10 C -0.026 4.026 11 C -0.189 4.189 12 C -0.040 4.040 13 C -0.252 4.252 14 C 0.167 3.833 15 O -0.204 6.204 16 C -0.401 4.401 17 H 0.089 0.911 18 C 0.024 3.976 19 N -0.913 5.913 20 Si 0.952 3.048 21 H -0.283 1.283 22 H -0.271 1.271 23 H -0.244 1.244 24 C -0.056 4.056 25 C -0.191 4.191 26 C 0.568 3.432 27 N -0.837 5.837 28 O -0.557 6.557 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.206 0.794 33 H 0.431 0.569 34 H 0.173 0.827 35 H 0.167 0.833 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.285 0.715 39 H 0.143 0.857 40 H 0.408 0.592 41 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.527 15.741 11.573 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.020 3.980 3 N -0.187 5.187 4 C -0.038 4.038 5 C -0.012 4.012 6 N -0.298 5.298 7 C 0.352 3.648 8 O -0.422 6.422 9 C -0.237 4.237 10 C -0.045 4.045 11 C -0.208 4.208 12 C -0.058 4.058 13 C -0.271 4.271 14 C 0.113 3.887 15 O -0.108 6.108 16 C -0.477 4.477 17 H 0.106 0.894 18 C -0.176 4.176 19 N -0.552 5.552 20 Si 0.775 3.225 21 H -0.209 1.209 22 H -0.196 1.196 23 H -0.167 1.167 24 C -0.085 4.085 25 C -0.197 4.197 26 C 0.354 3.646 27 N -0.401 5.401 28 O -0.438 6.438 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.223 0.777 33 H 0.273 0.727 34 H 0.190 0.810 35 H 0.184 0.816 36 H 0.166 0.834 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.160 0.840 40 H 0.238 0.762 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.307 15.730 11.109 20.972 hybrid contribution 1.051 -1.897 -0.588 2.246 sum -7.256 13.833 10.521 18.834 Atomic orbital electron populations 1.20929 0.86743 1.03816 1.04099 1.21675 0.98290 0.86572 0.91470 1.67711 1.09328 1.27869 1.13781 1.23433 0.88725 0.98223 0.93418 1.18751 0.84659 0.94664 1.03166 1.43051 1.02834 1.31388 1.52548 1.18494 0.87531 0.81569 0.77218 1.90839 1.72374 1.32335 1.46689 1.19019 0.91214 1.01116 1.12332 1.21413 0.95495 0.93666 0.93891 1.21246 0.93515 1.01635 1.04356 1.21472 1.01128 0.91235 0.91987 1.21337 0.93601 1.03306 1.08894 1.19716 0.92043 0.86521 0.90401 1.83738 1.35350 1.27766 1.63941 1.20834 0.91653 1.02120 1.33068 0.89363 1.25096 1.03754 0.94209 0.94586 1.69691 1.37571 1.13183 1.34767 0.85454 0.79746 0.77274 0.79997 1.20893 1.19584 1.16705 1.21998 0.93038 0.99480 0.93945 1.20658 0.93572 0.95285 1.10162 1.18058 0.86573 0.84470 0.75465 1.43758 1.12596 1.08428 1.75287 1.90742 1.14112 1.87577 1.51365 0.89614 0.90003 0.89503 0.77707 0.72704 0.81024 0.81571 0.83424 0.86907 0.90540 0.83990 0.76162 0.75207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 8.84 71.24 0.63 -1.65 16 2 C 0.16 4.12 6.82 42.90 0.29 4.41 16 3 N -0.48 -11.29 10.25 -182.36 -1.87 -13.16 16 4 C 0.12 2.38 11.11 84.87 0.94 3.33 16 5 C 0.08 2.01 6.31 38.22 0.24 2.26 16 6 N -0.65 -14.14 5.29 -306.15 -1.62 -15.76 16 7 C 0.56 18.58 7.62 86.69 0.66 19.25 16 8 O -0.54 -23.33 12.45 16.87 0.21 -23.12 16 9 C -0.23 -7.71 5.89 -19.99 -0.12 -7.83 16 10 C -0.03 -0.56 9.53 22.52 0.21 -0.35 16 11 C -0.19 -3.86 10.02 22.25 0.22 -3.64 16 12 C -0.04 -1.08 10.03 22.30 0.22 -0.86 16 13 C -0.25 -9.77 9.12 22.37 0.20 -9.56 16 14 C 0.17 7.22 6.66 22.91 0.15 7.37 16 15 O -0.20 -10.80 6.67 0.97 0.01 -10.79 16 16 C -0.40 -22.96 9.90 67.93 0.67 -22.28 16 17 H 0.09 5.19 5.53 -2.91 -0.02 5.17 16 18 C 0.02 1.37 5.49 84.85 0.47 1.84 16 19 N -0.91 -53.78 13.96 21.62 0.30 -53.48 16 20 Si 0.95 46.85 28.62 68.60 1.96 48.81 16 21 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.24 -12.14 6.91 99.48 0.69 -11.45 16 24 C -0.06 -1.58 8.26 22.86 0.19 -1.39 16 25 C -0.19 -5.29 5.89 -20.01 -0.12 -5.41 16 26 C 0.57 15.99 7.98 86.79 0.69 16.68 16 27 N -0.84 -19.93 8.83 -175.60 -1.55 -21.48 16 28 O -0.56 -17.42 14.21 -3.87 -0.06 -17.48 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 2.25 5.88 -2.39 -0.01 2.24 16 32 H 0.21 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.43 5.20 6.87 -92.71 -0.64 4.56 16 34 H 0.17 1.72 6.41 -2.91 -0.02 1.70 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 37 H 0.11 4.91 5.72 -2.91 -0.02 4.90 16 38 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.14 4.43 4.83 -2.91 -0.01 4.42 16 40 H 0.41 9.90 6.98 -92.70 -0.65 9.25 16 41 H 0.42 8.15 8.93 -92.71 -0.83 7.32 16 Total: -1.00 -78.01 350.79 1.99 -76.03 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.97 Total: 28.28 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.57 Total: 2.15 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -4.74 Total: -103.88 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: 0.16 Total: -51.39 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.96 Total: 48.81 kcal Total: -78.01 1.99 -76.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438402630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.912 kcal (2) G-P(sol) polarization free energy of solvation -78.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds