Wall clock time and date at job start Sat Apr 11 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38888 * 120.03938 * 2 1 4 4 N 1.39940 * 120.06810 * 0.02562 * 3 2 1 5 5 C 1.34775 * 120.00104 * 148.73290 * 4 3 2 6 6 O 1.21589 * 120.00048 * 3.38304 * 5 4 3 7 7 N 1.34775 * 120.00136 * 183.38117 * 5 4 3 8 8 C 1.46499 * 120.00182 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47556 * 179.97438 * 8 7 5 10 10 H 1.07996 * 119.99709 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00360 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99881 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00097 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47412 * 60.00194 * 13 11 9 15 15 H 1.48507 * 109.47377 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47190 * 299.99864 * 13 11 9 17 17 C 1.38842 * 119.86208 * 180.02562 * 3 2 1 18 18 C 1.38145 * 119.92980 * 0.02562 * 17 3 2 19 19 C 1.38252 * 120.06730 * 0.02562 * 18 17 3 20 20 C 1.38096 * 120.03053 * 180.02562 * 2 1 3 21 21 S 1.76198 * 119.96592 * 359.97438 * 20 2 1 22 22 O 1.42100 * 106.40234 * 177.00443 * 21 20 2 23 23 O 1.42097 * 106.40581 * 309.92796 * 21 20 2 24 24 N 1.65603 * 107.21608 * 63.46657 * 21 20 2 25 25 C 1.46495 * 120.00000 * 81.65883 * 24 21 20 26 26 C 1.46501 * 120.00107 * 261.65902 * 24 21 20 27 27 H 1.09005 * 109.47243 * 91.91112 * 1 2 3 28 28 H 1.08994 * 109.47648 * 211.91359 * 1 2 3 29 29 H 1.09003 * 109.47201 * 331.91460 * 1 2 3 30 30 H 0.97003 * 119.99977 * 328.73070 * 4 3 2 31 31 H 0.96997 * 120.00203 * 359.97438 * 7 5 4 32 32 H 1.09001 * 109.47194 * 299.99814 * 8 7 5 33 33 H 1.09002 * 109.47427 * 59.99917 * 8 7 5 34 34 H 0.96999 * 119.99916 * 180.02562 * 12 11 9 35 35 H 1.08001 * 120.03787 * 180.02562 * 17 3 2 36 36 H 1.07997 * 119.96281 * 179.97438 * 18 17 3 37 37 H 1.08002 * 119.92776 * 179.72730 * 19 18 17 38 38 H 1.09008 * 109.47273 * 65.11138 * 25 24 21 39 39 H 1.08999 * 109.47603 * 185.10881 * 25 24 21 40 40 H 1.08997 * 109.47278 * 305.11219 * 25 24 21 41 41 H 1.08997 * 109.47201 * 94.56494 * 26 24 21 42 42 H 1.08997 * 109.47203 * 214.57108 * 26 24 21 43 43 H 1.09008 * 109.46559 * 334.56921 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2022 1.2023 0.0000 4 7 1.5048 2.4155 0.0005 5 6 2.0341 3.4969 0.6064 6 8 3.1441 3.4353 1.0989 7 7 1.3331 4.6464 0.6663 8 6 1.9087 5.8219 1.3243 9 6 0.9307 6.9663 1.2539 10 1 -0.0242 6.8314 0.7679 11 6 1.2547 8.1853 1.8107 12 7 2.4174 8.3495 2.4029 13 14 0.0421 9.6036 1.7240 14 1 -1.2183 9.2199 2.4091 15 1 0.6251 10.7949 2.3920 16 1 -0.2447 9.9235 0.3025 17 6 3.5906 1.1980 -0.0005 18 6 4.2762 -0.0013 -0.0016 19 6 3.5812 -1.1964 -0.0027 20 6 2.1981 -1.1956 -0.0005 21 16 1.3170 -2.7214 -0.0005 22 8 2.2952 -3.7496 -0.0724 23 8 0.3591 -2.6317 1.0452 24 7 0.4594 -2.7922 -1.4154 25 6 1.1192 -3.2206 -2.6512 26 6 -0.9591 -2.4265 -1.4313 27 1 -0.3634 -0.0343 -1.0271 28 1 -0.3634 -0.8723 0.5432 29 1 -0.3634 0.9067 0.4838 30 1 0.6404 2.4783 -0.4352 31 1 0.4478 4.6957 0.2730 32 1 2.1195 5.5875 2.3677 33 1 2.8337 6.1036 0.8212 34 1 2.6452 9.2070 2.7950 35 1 4.1342 2.1313 -0.0001 36 1 5.3562 -0.0053 -0.0024 37 1 4.1194 -2.1328 -0.0080 38 1 1.4239 -4.2631 -2.5580 39 1 0.4273 -3.1178 -3.4871 40 1 1.9975 -2.5998 -2.8282 41 1 -1.0613 -1.3797 -1.7173 42 1 -1.4878 -3.0528 -2.1499 43 1 -1.3837 -2.5749 -0.4383 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466834067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:44 Heat of formation + Delta-G solvation = -88.481898 kcal Electronic energy + Delta-G solvation = -27687.142723 eV Core-core repulsion = 23666.004372 eV Total energy + Delta-G solvation = -4021.138351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87677 -39.98203 -38.55663 -37.19110 -36.97628 -36.39441 -35.92792 -34.40794 -33.83108 -31.20000 -29.33225 -28.91687 -27.75862 -25.62616 -25.20754 -24.21326 -22.71088 -22.04049 -20.27918 -19.84511 -19.22930 -18.61851 -18.12985 -17.35424 -17.23176 -17.05491 -16.69092 -16.56573 -16.14403 -15.72550 -15.61770 -15.32673 -15.06754 -14.70336 -14.54415 -14.16067 -14.11893 -14.06044 -13.89448 -13.74304 -13.51479 -13.33865 -12.94397 -12.93114 -12.78162 -12.70662 -12.61835 -12.55277 -12.34545 -12.24381 -11.99196 -11.63681 -11.52455 -11.12513 -10.81430 -10.27003 -10.00886 -9.93142 -9.14824 -8.30087 -6.46723 -0.72914 -0.24798 0.14353 1.42747 1.47480 1.53785 1.59232 1.87373 2.00864 2.37880 2.46502 2.66238 3.05443 3.23177 3.34325 3.59700 3.82747 3.89784 3.96178 4.24241 4.32146 4.40527 4.53281 4.53943 4.60154 4.67125 4.88013 4.96216 4.99512 5.00563 5.03245 5.08557 5.12561 5.21384 5.22964 5.27450 5.32067 5.43421 5.58819 5.59503 5.80135 5.85583 6.08196 6.63696 7.08548 7.23228 7.50763 8.81861 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023032 B = 0.002392 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.414288 B =11704.523474 C =12401.957438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.012 4.012 3 C 0.134 3.866 4 N -0.668 5.668 5 C 0.691 3.309 6 O -0.624 6.624 7 N -0.712 5.712 8 C 0.285 3.715 9 C -0.556 4.556 10 H 0.086 0.914 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.985 3.015 14 H -0.262 1.262 15 H -0.287 1.287 16 H -0.261 1.261 17 C -0.091 4.091 18 C -0.127 4.127 19 C -0.045 4.045 20 C -0.669 4.669 21 S 2.714 3.286 22 O -0.979 6.979 23 O -0.977 6.977 24 N -0.997 5.997 25 C 0.079 3.921 26 C 0.062 3.938 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.424 0.576 31 H 0.408 0.592 32 H -0.012 1.012 33 H -0.009 1.009 34 H 0.269 0.731 35 H 0.129 0.871 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.130 -23.881 -14.112 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.016 4.016 3 C 0.038 3.962 4 N -0.318 5.318 5 C 0.391 3.609 6 O -0.505 6.505 7 N -0.365 5.365 8 C 0.162 3.838 9 C -0.594 4.594 10 H 0.104 0.896 11 C -0.195 4.195 12 N -0.569 5.569 13 Si 0.808 3.192 14 H -0.187 1.187 15 H -0.212 1.212 16 H -0.185 1.185 17 C -0.112 4.112 18 C -0.146 4.146 19 C -0.066 4.066 20 C -0.755 4.755 21 S 2.804 3.196 22 O -0.970 6.970 23 O -0.967 6.967 24 N -0.839 5.839 25 C -0.065 4.065 26 C -0.082 4.082 27 H 0.141 0.859 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.263 0.737 31 H 0.244 0.756 32 H 0.006 0.994 33 H 0.009 0.991 34 H 0.078 0.922 35 H 0.147 0.853 36 H 0.173 0.827 37 H 0.177 0.823 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.084 -24.307 -12.928 28.428 hybrid contribution -0.212 1.936 -0.124 1.951 sum -7.296 -22.371 -13.051 26.908 Atomic orbital electron populations 1.21944 0.88537 1.06943 1.06035 1.19370 0.97079 0.89631 0.95566 1.17597 0.91498 0.84630 1.02475 1.42369 1.24220 1.07180 1.58029 1.16260 0.84318 0.81044 0.79265 1.90838 1.21230 1.84117 1.54315 1.45319 1.20680 1.10040 1.60487 1.18479 0.93541 0.81324 0.90431 1.21557 1.03260 0.95861 1.38745 0.89613 1.26047 0.97465 1.02022 0.93963 1.70130 1.23428 1.26074 1.37249 0.85201 0.78197 0.76757 0.79019 1.18701 1.21246 1.18546 1.21832 0.93653 1.00155 0.95537 1.21414 1.01609 0.91008 1.00569 1.21137 0.91974 0.99827 0.93618 1.30723 1.06502 1.18885 1.19432 1.01251 0.72460 0.72913 0.72928 1.93519 1.62128 1.54620 1.86684 1.93504 1.61270 1.87083 1.54824 1.57041 1.20157 1.81916 1.24760 1.21822 0.98668 1.00318 0.85728 1.22234 0.78271 1.02790 1.04905 0.85892 0.87876 0.89517 0.73680 0.75579 0.99428 0.99122 0.92214 0.85324 0.82733 0.82339 0.91610 0.87075 0.91661 0.90254 0.87995 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 7.73 71.23 0.55 -2.42 16 2 C -0.01 -0.29 5.89 -19.74 -0.12 -0.40 16 3 C 0.13 3.92 6.34 38.15 0.24 4.16 16 4 N -0.67 -19.29 4.83 -317.18 -1.53 -20.82 16 5 C 0.69 27.69 8.42 179.06 1.51 29.20 16 6 O -0.62 -30.68 13.58 -4.00 -0.05 -30.73 16 7 N -0.71 -29.09 5.55 -482.30 -2.68 -31.77 16 8 C 0.29 15.27 5.43 85.63 0.46 15.74 16 9 C -0.56 -29.38 9.28 25.60 0.24 -29.14 16 10 H 0.09 4.03 7.60 -2.91 -0.02 4.01 16 11 C 0.00 0.27 5.46 84.65 0.46 0.73 16 12 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 13 Si 0.99 41.33 29.54 68.60 2.03 43.35 16 14 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 15 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 17 C -0.09 -2.87 8.72 22.39 0.20 -2.67 16 18 C -0.13 -3.20 10.04 22.25 0.22 -2.98 16 19 C -0.05 -1.05 9.55 22.29 0.21 -0.83 16 20 C -0.67 -15.35 5.90 22.25 0.13 -15.22 16 21 S 2.71 55.78 5.06 -56.49 -0.29 55.49 16 22 O -0.98 -24.26 16.36 -128.00 -2.09 -26.35 16 23 O -0.98 -24.47 14.01 -128.00 -1.79 -26.26 16 24 N -1.00 -12.29 3.50 -562.69 -1.97 -14.26 16 25 C 0.08 0.65 10.35 127.77 1.32 1.97 16 26 C 0.06 0.47 8.92 127.77 1.14 1.61 16 27 H 0.12 1.11 5.79 -2.38 -0.01 1.10 16 28 H 0.10 1.83 4.10 -2.39 -0.01 1.82 16 29 H 0.09 1.41 7.01 -2.39 -0.02 1.40 16 30 H 0.42 8.51 7.66 -92.71 -0.71 7.80 16 31 H 0.41 13.29 8.34 -92.71 -0.77 12.52 16 32 H -0.01 -0.75 8.14 -2.39 -0.02 -0.76 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.13 4.79 5.97 -2.91 -0.02 4.77 16 36 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.16 3.00 7.33 -2.91 -0.02 2.98 16 38 H 0.07 0.58 8.12 -2.38 -0.02 0.56 16 39 H 0.11 0.28 7.90 -2.39 -0.02 0.26 16 40 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 0.33 5.60 -2.39 -0.01 0.31 16 42 H 0.10 0.27 8.06 -2.39 -0.02 0.25 16 43 H 0.08 0.77 6.57 -2.38 -0.02 0.75 16 Total: -1.00 -80.39 359.91 -1.93 -82.32 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.40 Total: 24.33 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 6.57 Total: -0.26 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -5.90 Total: -121.87 kcal Atomic # 8 Polarization: -79.41 SS G_CDS: -3.94 Total: -83.35 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 55.78 SS G_CDS: -0.29 Total: 55.49 kcal Total: -80.39 -1.93 -82.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466834067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.166 kcal (2) G-P(sol) polarization free energy of solvation -80.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds