Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48501 * 109.46988 * 239.99832 * 3 2 1 5 5 H 1.48496 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47219 * 120.00244 * 3 2 1 7 7 C 1.37879 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00163 * 172.22840 * 7 2 1 9 9 C 1.50699 * 120.00096 * 352.22807 * 7 2 1 10 10 C 1.52998 * 115.55104 * 84.78119 * 9 7 2 11 11 S 1.81400 * 109.47051 * 65.19901 * 10 9 7 12 12 O 1.42100 * 110.54607 * 62.18606 * 11 10 9 13 13 O 1.42109 * 110.54038 * 285.43472 * 11 10 9 14 14 N 1.65598 * 104.45160 * 173.81500 * 11 10 9 15 15 C 1.46501 * 120.00366 * 64.99504 * 14 11 10 16 16 C 1.52997 * 109.47406 * 165.00202 * 15 14 11 17 17 C 1.52999 * 109.47224 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.46935 * 179.97438 * 17 16 15 19 19 C 1.35861 * 119.94275 * 269.97774 * 18 17 16 20 20 C 1.36025 * 119.19357 * 180.02562 * 19 18 17 21 21 C 1.39800 * 119.08180 * 0.02763 * 20 19 18 22 22 N 1.31767 * 119.82990 * 359.97242 * 21 20 19 23 23 C 1.33513 * 120.81758 * 0.02562 * 22 21 20 24 24 O 1.21955 * 119.52684 * 179.97438 * 23 22 21 25 25 C 1.53004 * 117.50040 * 230.45621 * 9 7 2 26 26 C 1.53004 * 117.49576 * 299.11294 * 9 7 2 27 27 H 0.96993 * 120.00029 * 5.02565 * 1 2 3 28 28 H 1.08997 * 109.47066 * 305.19797 * 10 9 7 29 29 H 1.08997 * 109.47228 * 185.19631 * 10 9 7 30 30 H 0.96998 * 119.99488 * 245.00015 * 14 11 10 31 31 H 1.09003 * 109.46966 * 44.99642 * 15 14 11 32 32 H 1.09003 * 109.46987 * 285.00340 * 15 14 11 33 33 H 1.09003 * 109.46790 * 59.99943 * 16 15 14 34 34 H 1.08995 * 109.47096 * 300.00400 * 16 15 14 35 35 H 1.09002 * 109.46715 * 60.00461 * 17 16 15 36 36 H 1.08995 * 109.47483 * 300.00252 * 17 16 15 37 37 H 1.08003 * 120.40238 * 0.02562 * 19 18 17 38 38 H 1.08001 * 120.45432 * 180.02562 * 20 19 18 39 39 H 1.08005 * 120.08716 * 180.25688 * 21 20 19 40 40 H 1.08995 * 117.50120 * 215.00264 * 25 9 7 41 41 H 1.08999 * 117.49465 * 0.02562 * 25 9 7 42 42 H 1.09001 * 117.50354 * 359.97438 * 26 9 7 43 43 H 1.09004 * 117.49886 * 144.97487 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0771 -1.1984 -0.1259 9 6 1.2615 -2.4931 0.1776 10 6 0.6669 -3.0924 -1.0984 11 16 2.0070 -3.5644 -2.2262 12 8 2.8267 -4.5640 -1.6361 13 8 2.5777 -2.4126 -2.8321 14 7 1.2436 -4.3449 -3.4713 15 6 0.3175 -3.6113 -4.3376 16 6 0.0444 -4.4296 -5.6012 17 6 -0.9234 -3.6638 -6.5055 18 7 -1.1844 -4.4471 -7.7157 19 6 -0.3945 -4.2885 -8.8096 20 6 -0.6509 -5.0232 -9.9253 21 6 -1.7216 -5.9220 -9.9158 22 7 -2.4637 -6.0460 -8.8340 23 6 -2.2072 -5.3221 -7.7419 24 8 -2.9095 -5.4554 -6.7538 25 6 1.7806 -3.4649 1.2393 26 6 0.4828 -2.6896 1.4799 27 1 -0.4850 0.8368 -0.0736 28 1 0.0274 -2.3545 -1.5826 29 1 0.0776 -3.9738 -0.8454 30 1 1.4097 -5.2878 -3.6271 31 1 0.7591 -2.6536 -4.6132 32 1 -0.6187 -3.4401 -3.8062 33 1 -0.3973 -5.3873 -5.3254 34 1 0.9805 -4.6009 -6.1325 35 1 -0.4821 -2.7060 -6.7813 36 1 -1.8595 -3.4929 -5.9739 37 1 0.4270 -3.5875 -8.7937 38 1 -0.0358 -4.9137 -10.8062 39 1 -1.9373 -6.5166 -10.7913 40 1 1.6986 -4.5312 1.0287 41 1 2.6593 -3.1644 1.8099 42 1 0.5083 -1.8796 2.2088 43 1 -0.4533 -3.2456 1.4276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475444099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = -34.557277 kcal Electronic energy + Delta-G solvation = -27281.580983 eV Core-core repulsion = 23262.780980 eV Total energy + Delta-G solvation = -4018.800004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05315 -37.40231 -37.11436 -36.77091 -36.28166 -35.36677 -35.06624 -32.07055 -31.90735 -30.82033 -28.19368 -26.58043 -25.47996 -24.89065 -23.59109 -22.09787 -21.22785 -19.74339 -18.72820 -18.72515 -17.98143 -17.16248 -17.02608 -16.47299 -16.30516 -15.84340 -15.52366 -15.10433 -15.02176 -14.72822 -14.40494 -14.20919 -13.81707 -13.54980 -13.37647 -13.14376 -12.94990 -12.41681 -12.12409 -11.95783 -11.86078 -11.55873 -11.44848 -11.31480 -11.21290 -11.12713 -11.08168 -11.00048 -10.93539 -10.63025 -10.48004 -10.14907 -9.93425 -9.76322 -9.29853 -8.98578 -8.89064 -8.58897 -8.11622 -6.16521 -4.27377 0.19928 1.01947 1.27291 2.02933 3.29879 3.31879 3.34702 3.38139 3.46773 3.87307 3.94292 4.22495 4.34391 4.40329 4.45644 4.56458 4.66609 4.71046 4.90281 4.99095 5.10714 5.11886 5.18743 5.22081 5.34836 5.41592 5.52186 5.72496 5.74165 5.85691 5.94381 6.05095 6.08387 6.24692 6.35553 6.59242 6.70862 6.96966 7.15266 7.23516 7.37674 7.43230 7.77511 7.81136 8.17970 8.77960 9.43702 10.91048 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002579 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.844021 B =10853.398505 C =11300.826466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.082 3.918 3 Si 0.891 3.109 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.553 4.553 11 S 2.607 3.393 12 O -0.973 6.973 13 O -0.950 6.950 14 N -1.134 6.134 15 C 0.120 3.880 16 C -0.140 4.140 17 C 0.089 3.911 18 N -0.512 5.512 19 C 0.188 3.812 20 C -0.301 4.301 21 C 0.246 3.754 22 N -0.550 5.550 23 C 0.622 3.378 24 O -0.526 6.526 25 C -0.208 4.208 26 C -0.141 4.141 27 H 0.264 0.736 28 H 0.133 0.867 29 H 0.100 0.900 30 H 0.409 0.591 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.176 0.824 38 H 0.158 0.842 39 H 0.173 0.827 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -7.853 -20.148 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.123 4.123 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.041 3.959 10 C -0.687 4.687 11 S 2.705 3.295 12 O -0.964 6.964 13 O -0.940 6.940 14 N -0.890 5.890 15 C -0.007 4.007 16 C -0.179 4.179 17 C -0.034 4.034 18 N -0.226 5.226 19 C 0.050 3.950 20 C -0.327 4.327 21 C 0.063 3.937 22 N -0.282 5.282 23 C 0.325 3.675 24 O -0.400 6.400 25 C -0.246 4.246 26 C -0.180 4.180 27 H 0.073 0.927 28 H 0.152 0.848 29 H 0.118 0.882 30 H 0.242 0.758 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.193 0.807 38 H 0.176 0.824 39 H 0.190 0.810 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.799 -7.946 -18.962 20.638 hybrid contribution 0.395 1.040 -0.155 1.123 sum -1.403 -6.907 -19.116 20.374 Atomic orbital electron populations 1.69969 1.06027 1.27315 1.47657 1.24956 0.94807 0.99209 0.93332 0.86650 0.79898 0.82403 0.79264 1.19488 1.21132 1.19884 1.20487 0.93662 0.88611 1.52641 0.91398 1.18273 0.99035 0.94326 0.84302 1.29971 1.16453 1.08555 1.13694 1.05147 0.76451 0.73699 0.74235 1.93510 1.65514 1.59471 1.77887 1.93531 1.74962 1.50939 1.74577 1.55985 1.62287 1.22493 1.48262 1.21092 0.93709 0.95507 0.90405 1.22095 0.99363 1.00424 0.96029 1.22130 1.02796 0.94142 0.84379 1.46661 1.26663 1.35479 1.13750 1.22727 0.92267 0.94744 0.85303 1.21636 1.05406 1.04956 1.00654 1.23712 0.85980 0.88783 0.95179 1.69957 1.30901 1.26570 1.00748 1.18296 0.80591 0.79782 0.88851 1.91033 1.48372 1.67145 1.33471 1.23200 0.98689 0.96052 1.06613 1.22558 0.92595 1.01031 1.01852 0.92654 0.84835 0.88168 0.75830 0.89659 0.91185 0.90183 0.90514 0.87930 0.87062 0.80716 0.82407 0.80969 0.90670 0.89520 0.89572 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.66 12.98 55.43 0.72 -22.94 16 2 C 0.08 2.20 5.38 -17.82 -0.10 2.11 16 3 Si 0.89 20.97 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.93 8.18 -34.44 -0.28 -14.21 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 9 C 0.04 1.04 1.32 -155.66 -0.21 0.83 16 10 C -0.55 -11.34 5.93 37.16 0.22 -11.12 16 11 S 2.61 50.60 5.19 -107.50 -0.56 50.04 16 12 O -0.97 -20.91 18.08 -57.54 -1.04 -21.95 16 13 O -0.95 -21.57 17.17 -57.54 -0.99 -22.56 16 14 N -1.13 -15.77 5.89 -10.61 -0.06 -15.83 16 15 C 0.12 1.40 6.13 -4.04 -0.02 1.38 16 16 C -0.14 -1.27 5.68 -26.73 -0.15 -1.42 16 17 C 0.09 0.71 5.35 -4.04 -0.02 0.69 16 18 N -0.51 -4.42 2.59 -121.73 -0.32 -4.74 16 19 C 0.19 0.88 10.41 -16.56 -0.17 0.71 16 20 C -0.30 -1.12 10.07 -39.79 -0.40 -1.52 16 21 C 0.25 1.47 11.30 -17.00 -0.19 1.28 16 22 N -0.55 -6.32 10.48 -16.60 -0.17 -6.49 16 23 C 0.62 8.08 8.35 -88.18 -0.74 7.34 16 24 O -0.53 -9.06 16.74 4.96 0.08 -8.97 16 25 C -0.21 -4.56 9.96 -26.69 -0.27 -4.83 16 26 C -0.14 -3.21 9.49 -26.69 -0.25 -3.46 16 27 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 28 H 0.13 2.80 8.14 -51.93 -0.42 2.38 16 29 H 0.10 1.76 8.09 -51.93 -0.42 1.34 16 30 H 0.41 4.84 8.62 -34.46 -0.30 4.55 16 31 H 0.09 1.00 7.69 -51.93 -0.40 0.60 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.52 8.03 -51.93 -0.42 0.10 16 36 H 0.11 1.07 7.39 -51.93 -0.38 0.68 16 37 H 0.18 0.17 8.06 -52.48 -0.42 -0.26 16 38 H 0.16 0.07 8.06 -52.49 -0.42 -0.35 16 39 H 0.17 0.37 8.06 -52.48 -0.42 -0.06 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 42 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -38.77 382.82 -10.28 -49.06 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.11 Total: 4.91 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -2.58 Total: -22.24 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.17 Total: -50.00 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -1.94 Total: -53.48 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 50.60 SS G_CDS: -0.56 Total: 50.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.77 -10.28 -49.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475444099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.498 kcal (2) G-P(sol) polarization free energy of solvation -38.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds