Wall clock time and date at job start Sat Apr 11 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48501 * 109.46988 * 239.99832 * 3 2 1 5 5 H 1.48496 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47219 * 120.00244 * 3 2 1 7 7 C 1.37879 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00163 * 172.22840 * 7 2 1 9 9 C 1.50699 * 120.00096 * 352.22807 * 7 2 1 10 10 C 1.52998 * 115.55104 * 84.78119 * 9 7 2 11 11 S 1.81400 * 109.47051 * 65.19901 * 10 9 7 12 12 O 1.42100 * 110.54607 * 62.18606 * 11 10 9 13 13 O 1.42109 * 110.54038 * 285.43472 * 11 10 9 14 14 N 1.65598 * 104.45160 * 173.81500 * 11 10 9 15 15 C 1.46501 * 120.00366 * 64.99504 * 14 11 10 16 16 C 1.52997 * 109.47406 * 165.00202 * 15 14 11 17 17 C 1.52999 * 109.47224 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.46935 * 179.97438 * 17 16 15 19 19 C 1.35861 * 119.94275 * 269.97774 * 18 17 16 20 20 C 1.36025 * 119.19357 * 180.02562 * 19 18 17 21 21 C 1.39800 * 119.08180 * 0.02763 * 20 19 18 22 22 N 1.31767 * 119.82990 * 359.97242 * 21 20 19 23 23 C 1.33513 * 120.81758 * 0.02562 * 22 21 20 24 24 O 1.21955 * 119.52684 * 179.97438 * 23 22 21 25 25 C 1.53004 * 117.50040 * 230.45621 * 9 7 2 26 26 C 1.53004 * 117.49576 * 299.11294 * 9 7 2 27 27 H 0.96993 * 120.00029 * 5.02565 * 1 2 3 28 28 H 1.08997 * 109.47066 * 305.19797 * 10 9 7 29 29 H 1.08997 * 109.47228 * 185.19631 * 10 9 7 30 30 H 0.96998 * 119.99488 * 245.00015 * 14 11 10 31 31 H 1.09003 * 109.46966 * 44.99642 * 15 14 11 32 32 H 1.09003 * 109.46987 * 285.00340 * 15 14 11 33 33 H 1.09003 * 109.46790 * 59.99943 * 16 15 14 34 34 H 1.08995 * 109.47096 * 300.00400 * 16 15 14 35 35 H 1.09002 * 109.46715 * 60.00461 * 17 16 15 36 36 H 1.08995 * 109.47483 * 300.00252 * 17 16 15 37 37 H 1.08003 * 120.40238 * 0.02562 * 19 18 17 38 38 H 1.08001 * 120.45432 * 180.02562 * 20 19 18 39 39 H 1.08005 * 120.08716 * 180.25688 * 21 20 19 40 40 H 1.08995 * 117.50120 * 215.00264 * 25 9 7 41 41 H 1.08999 * 117.49465 * 0.02562 * 25 9 7 42 42 H 1.09001 * 117.50354 * 359.97438 * 26 9 7 43 43 H 1.09004 * 117.49886 * 144.97487 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0771 -1.1984 -0.1259 9 6 1.2615 -2.4931 0.1776 10 6 0.6669 -3.0924 -1.0984 11 16 2.0070 -3.5644 -2.2262 12 8 2.8267 -4.5640 -1.6361 13 8 2.5777 -2.4126 -2.8321 14 7 1.2436 -4.3449 -3.4713 15 6 0.3175 -3.6113 -4.3376 16 6 0.0444 -4.4296 -5.6012 17 6 -0.9234 -3.6638 -6.5055 18 7 -1.1844 -4.4471 -7.7157 19 6 -0.3945 -4.2885 -8.8096 20 6 -0.6509 -5.0232 -9.9253 21 6 -1.7216 -5.9220 -9.9158 22 7 -2.4637 -6.0460 -8.8340 23 6 -2.2072 -5.3221 -7.7419 24 8 -2.9095 -5.4554 -6.7538 25 6 1.7806 -3.4649 1.2393 26 6 0.4828 -2.6896 1.4799 27 1 -0.4850 0.8368 -0.0736 28 1 0.0274 -2.3545 -1.5826 29 1 0.0776 -3.9738 -0.8454 30 1 1.4097 -5.2878 -3.6271 31 1 0.7591 -2.6536 -4.6132 32 1 -0.6187 -3.4401 -3.8062 33 1 -0.3973 -5.3873 -5.3254 34 1 0.9805 -4.6009 -6.1325 35 1 -0.4821 -2.7060 -6.7813 36 1 -1.8595 -3.4929 -5.9739 37 1 0.4270 -3.5875 -8.7937 38 1 -0.0358 -4.9137 -10.8062 39 1 -1.9373 -6.5166 -10.7913 40 1 1.6986 -4.5312 1.0287 41 1 2.6593 -3.1644 1.8099 42 1 0.5083 -1.8796 2.2088 43 1 -0.4533 -3.2456 1.4276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475444099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:50 Heat of formation + Delta-G solvation = -65.272898 kcal Electronic energy + Delta-G solvation = -27282.912913 eV Core-core repulsion = 23262.780980 eV Total energy + Delta-G solvation = -4020.131933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.69119 -38.57302 -38.18936 -38.08186 -37.75847 -36.80075 -36.17291 -34.08257 -32.62517 -31.52641 -29.85896 -27.50489 -27.27617 -25.49800 -24.29648 -23.00879 -22.87185 -21.50272 -20.24811 -19.34356 -18.62654 -18.45226 -18.31831 -17.77505 -17.12391 -16.99378 -16.83833 -16.66064 -16.20917 -15.89617 -15.67577 -15.40333 -14.92099 -14.75715 -14.43318 -14.04803 -13.75115 -13.69567 -13.55056 -13.29633 -13.13230 -12.96458 -12.91020 -12.85709 -12.82870 -12.60664 -12.43497 -12.24972 -12.17261 -11.94818 -11.91438 -11.83889 -11.54907 -10.88180 -10.58204 -10.55895 -10.51260 -9.88059 -9.51828 -8.18384 -6.33806 -0.52474 -0.26050 0.73851 1.41153 1.41451 1.42258 1.49798 2.02803 2.40485 2.78926 2.92590 3.08455 3.35276 3.36898 3.43592 3.64525 3.74778 3.79255 3.82288 3.96218 4.02516 4.22115 4.30466 4.41934 4.46876 4.49624 4.54012 4.59051 4.64828 4.78012 4.84273 4.93810 4.96294 4.97532 5.12519 5.20102 5.40141 5.46054 5.55336 5.57061 5.71903 6.11147 6.22716 6.72454 6.75287 7.13269 7.38599 8.88419 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002579 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.844021 B =10853.398505 C =11300.826466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.043 3.957 3 Si 0.937 3.063 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.013 3.987 10 C -0.557 4.557 11 S 2.630 3.370 12 O -0.996 6.996 13 O -0.986 6.986 14 N -1.116 6.116 15 C 0.110 3.890 16 C -0.127 4.127 17 C 0.088 3.912 18 N -0.511 5.511 19 C 0.182 3.818 20 C -0.282 4.282 21 C 0.246 3.754 22 N -0.606 5.606 23 C 0.610 3.390 24 O -0.597 6.597 25 C -0.197 4.197 26 C -0.142 4.142 27 H 0.266 0.734 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.422 0.578 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.087 0.913 37 H 0.222 0.778 38 H 0.204 0.796 39 H 0.209 0.791 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 -7.833 -22.788 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.161 4.161 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.069 0.931 9 C 0.011 3.989 10 C -0.689 4.689 11 S 2.727 3.273 12 O -0.986 6.986 13 O -0.976 6.976 14 N -0.877 5.877 15 C -0.016 4.016 16 C -0.166 4.166 17 C -0.035 4.035 18 N -0.223 5.223 19 C 0.045 3.955 20 C -0.306 4.306 21 C 0.068 3.932 22 N -0.341 5.341 23 C 0.313 3.687 24 O -0.477 6.477 25 C -0.234 4.234 26 C -0.181 4.181 27 H 0.075 0.925 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.257 0.743 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.159 0.841 36 H 0.106 0.894 37 H 0.238 0.762 38 H 0.221 0.779 39 H 0.226 0.774 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.503 -7.921 -21.656 23.064 hybrid contribution 0.073 0.992 0.500 1.113 sum -0.429 -6.929 -21.156 22.266 Atomic orbital electron populations 1.70025 1.06696 1.27909 1.48209 1.25541 0.95604 1.01627 0.93282 0.85927 0.79072 0.79726 0.79040 1.19775 1.20019 1.19566 1.20676 0.93208 0.90508 1.52897 0.93098 1.18416 1.00098 0.94328 0.86064 1.29912 1.17031 1.09368 1.12602 1.04179 0.75963 0.72898 0.74302 1.93469 1.66535 1.59763 1.78838 1.93482 1.75964 1.52807 1.75318 1.55458 1.62240 1.23089 1.46946 1.21338 0.93181 0.95886 0.91221 1.21954 1.00404 0.99145 0.95135 1.22164 1.01649 0.95368 0.84310 1.46498 1.26256 1.34565 1.14976 1.23619 0.92428 0.95420 0.84033 1.22175 1.04175 1.02646 1.01634 1.24468 0.85419 0.88797 0.94506 1.69885 1.33681 1.28426 1.02089 1.18513 0.81100 0.80448 0.88665 1.90958 1.51176 1.69764 1.35778 1.23245 0.98095 0.96899 1.05205 1.22511 0.93798 1.00893 1.00872 0.92517 0.85666 0.85341 0.74282 0.89338 0.90974 0.91960 0.88414 0.84148 0.89436 0.76189 0.77947 0.77426 0.88467 0.89836 0.91528 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.47 12.98 21.45 0.28 -48.19 16 2 C 0.04 2.29 5.38 84.65 0.46 2.74 16 3 Si 0.94 42.99 29.55 68.60 2.03 45.02 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.54 -29.18 8.18 25.60 0.21 -28.97 16 8 H 0.05 2.86 7.83 -2.91 -0.02 2.84 16 9 C 0.01 0.63 1.32 -52.93 -0.07 0.56 16 10 C -0.56 -22.50 5.93 71.98 0.43 -22.07 16 11 S 2.63 100.24 5.19 -56.49 -0.29 99.95 16 12 O -1.00 -41.88 18.08 -127.65 -2.31 -44.19 16 13 O -0.99 -44.55 17.17 -127.65 -2.19 -46.74 16 14 N -1.12 -29.54 5.89 -187.49 -1.10 -30.64 16 15 C 0.11 2.44 6.13 86.38 0.53 2.97 16 16 C -0.13 -2.12 5.68 30.59 0.17 -1.95 16 17 C 0.09 1.31 5.35 86.38 0.46 1.77 16 18 N -0.51 -8.10 2.59 -657.25 -1.70 -9.80 16 19 C 0.18 0.97 10.41 83.55 0.87 1.84 16 20 C -0.28 -0.85 10.07 22.13 0.22 -0.63 16 21 C 0.25 2.33 11.30 85.08 0.96 3.29 16 22 N -0.61 -13.96 10.48 -325.24 -3.41 -17.37 16 23 C 0.61 16.29 8.35 179.49 1.50 17.79 16 24 O -0.60 -22.18 16.74 -5.17 -0.09 -22.27 16 25 C -0.20 -8.50 9.96 30.62 0.30 -8.19 16 26 C -0.14 -6.40 9.49 30.62 0.29 -6.10 16 27 H 0.27 13.74 8.32 -92.71 -0.77 12.97 16 28 H 0.13 5.26 8.14 -2.39 -0.02 5.24 16 29 H 0.13 4.32 8.09 -2.39 -0.02 4.30 16 30 H 0.42 9.27 8.62 -96.75 -0.83 8.44 16 31 H 0.09 1.94 7.69 -2.39 -0.02 1.92 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.14 0.97 8.03 -2.39 -0.02 0.95 16 36 H 0.09 1.75 7.39 -2.39 -0.02 1.73 16 37 H 0.22 -0.91 8.06 -2.91 -0.02 -0.94 16 38 H 0.20 -1.16 8.06 -2.91 -0.02 -1.18 16 39 H 0.21 0.19 8.06 -2.91 -0.02 0.17 16 40 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 41 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 42 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.08 3.46 8.14 -2.38 -0.02 3.44 16 Total: -1.00 -89.16 382.82 -2.26 -91.42 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.19 Total: 19.77 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 6.34 Total: -36.96 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -5.94 Total: -106.00 kcal Atomic # 8 Polarization: -108.61 SS G_CDS: -4.59 Total: -113.19 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 100.24 SS G_CDS: -0.29 Total: 99.95 kcal Total: -89.16 -2.26 -91.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475444099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.143 kcal (2) G-P(sol) polarization free energy of solvation -89.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds