Wall clock time and date at job start Sat Apr 11 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38135 * 120.03278 * 2 1 4 4 C 1.38265 * 120.06888 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.92870 * 180.02562 * 4 3 2 6 6 N 1.65606 * 107.21747 * 114.99902 * 5 4 3 7 7 O 1.42097 * 106.39986 * 228.53749 * 5 4 3 8 8 O 1.42100 * 106.40442 * 1.45827 * 5 4 3 9 9 C 1.38306 * 120.14098 * 359.97438 * 4 3 2 10 10 C 1.50699 * 119.96505 * 179.97438 * 9 4 3 11 11 C 1.38092 * 120.06737 * 359.75293 * 9 4 3 12 12 C 1.38846 * 120.03906 * 180.02562 * 2 1 3 13 13 N 1.39945 * 120.06633 * 359.95505 * 12 2 1 14 14 C 1.34775 * 119.99894 * 155.45775 * 13 12 2 15 15 O 1.21585 * 120.00251 * 354.38265 * 14 13 12 16 16 N 1.34772 * 120.00040 * 174.37446 * 14 13 12 17 17 C 1.46504 * 120.00272 * 180.27275 * 16 14 13 18 18 H 1.08996 * 109.47334 * 324.73471 * 17 16 14 19 19 C 1.53009 * 109.46670 * 84.73000 * 17 16 14 20 20 C 1.50697 * 109.47826 * 204.72735 * 17 16 14 21 21 H 1.08005 * 119.99518 * 0.02562 * 20 17 16 22 22 C 1.37873 * 120.00278 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99861 * 179.97438 * 22 20 17 24 24 Si 1.86797 * 119.99971 * 0.02562 * 22 20 17 25 25 H 1.48504 * 109.47154 * 89.99726 * 24 22 20 26 26 H 1.48497 * 109.46839 * 209.99552 * 24 22 20 27 27 H 1.48496 * 109.47187 * 329.99600 * 24 22 20 28 28 H 1.09000 * 109.47235 * 269.97521 * 1 2 3 29 29 H 1.08999 * 109.47556 * 29.97712 * 1 2 3 30 30 H 1.09007 * 109.47075 * 149.98017 * 1 2 3 31 31 H 1.08001 * 119.96947 * 359.97438 * 3 2 1 32 32 H 0.97003 * 119.99809 * 359.97438 * 6 5 4 33 33 H 0.96997 * 119.99933 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.46388 * 90.00428 * 10 9 4 35 35 H 1.08998 * 109.47234 * 210.00146 * 10 9 4 36 36 H 1.09000 * 109.47329 * 330.00674 * 10 9 4 37 37 H 1.07999 * 120.03350 * 180.27140 * 11 9 4 38 38 H 0.96999 * 120.00247 * 335.46270 * 13 12 2 39 39 H 0.96997 * 120.00076 * 0.02562 * 16 14 13 40 40 H 1.09000 * 109.46744 * 300.00248 * 19 17 16 41 41 H 1.08996 * 109.46857 * 60.00179 * 19 17 16 42 42 H 1.08993 * 109.46744 * 180.02562 * 19 17 16 43 43 H 0.96996 * 119.99780 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5810 1.1968 -0.0005 5 16 4.4591 2.7243 0.0001 6 7 5.2835 2.8152 1.4335 7 8 5.4412 2.6230 -1.0218 8 8 3.4777 3.7514 0.0359 9 6 4.2762 0.0011 -0.0005 10 6 5.7832 0.0067 -0.0017 11 6 3.5909 -1.1977 0.0051 12 6 2.2020 -1.2020 -0.0005 13 7 1.5045 -2.4152 -0.0001 14 6 2.0888 -3.5286 -0.4854 15 8 3.1805 -3.4602 -1.0162 16 7 1.4630 -4.7177 -0.3821 17 6 2.1008 -5.9289 -0.9043 18 1 2.6609 -5.6845 -1.8068 19 6 3.0538 -6.4979 0.1489 20 6 1.0440 -6.9525 -1.2307 21 1 0.0014 -6.7235 -1.0660 22 6 1.4080 -8.1811 -1.7394 23 7 0.4857 -9.0745 -2.0237 24 14 3.2112 -8.5773 -2.0234 25 1 3.7817 -9.1932 -0.7984 26 1 3.3366 -9.5261 -3.1588 27 1 3.9489 -7.3277 -2.3387 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8899 -0.5142 31 1 1.6583 2.1312 -0.0004 32 1 5.2159 2.0938 2.0785 33 1 5.8334 3.5901 1.6285 34 1 6.1472 0.0084 1.0257 35 1 6.1494 -0.8821 -0.5154 36 1 6.1429 0.8979 -0.5161 37 1 4.1343 -2.1310 0.0096 38 1 0.6005 -2.4549 0.3493 39 1 0.5920 -4.7723 0.0411 40 1 3.8182 -5.7576 0.3849 41 1 2.4937 -6.7424 1.0514 42 1 3.5286 -7.3987 -0.2397 43 1 0.7418 -9.9388 -2.3819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477070751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:53 Heat of formation + Delta-G solvation = -72.671268 kcal Electronic energy + Delta-G solvation = -27677.147288 eV Core-core repulsion = 23656.694537 eV Total energy + Delta-G solvation = -4020.452750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83069 -39.02275 -37.41574 -36.03051 -35.74655 -34.98213 -33.68359 -33.24308 -32.56796 -30.70844 -29.62315 -29.06568 -25.32256 -25.19383 -23.92164 -21.79888 -21.31406 -20.20529 -19.65680 -18.65216 -18.08898 -17.61975 -17.28518 -16.52090 -16.17834 -16.05333 -15.52303 -15.29403 -14.95822 -14.53209 -14.22370 -14.15587 -13.62557 -13.42921 -13.37656 -13.12715 -13.04373 -12.84224 -12.41460 -12.31512 -12.30005 -12.24552 -12.13128 -11.94339 -11.66522 -11.54513 -11.44260 -10.91001 -10.86484 -10.75551 -10.66347 -10.28837 -9.87420 -9.58459 -9.35717 -8.88002 -8.78468 -8.54606 -8.18709 -6.30063 -4.33816 0.22709 0.67734 1.16660 2.71562 2.89136 3.11395 3.16708 3.29811 3.33135 3.41886 3.64720 4.23206 4.30509 4.45000 4.56661 4.68054 4.83400 4.99848 5.04692 5.16568 5.28927 5.36365 5.39819 5.49562 5.68003 5.71061 5.75868 5.82870 6.02012 6.10546 6.14482 6.20344 6.24010 6.37272 6.43030 6.65742 6.71404 6.85491 6.87957 7.11800 7.25164 7.38953 8.10944 8.39909 8.65952 8.81226 9.29604 10.81938 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.002578 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.605542 B =10856.895389 C =11690.752467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.156 4.156 3 C 0.008 3.992 4 C -0.706 4.706 5 S 2.707 3.293 6 N -1.251 6.251 7 O -0.964 6.964 8 O -0.972 6.972 9 C 0.034 3.966 10 C -0.173 4.173 11 C -0.156 4.156 12 C 0.250 3.750 13 N -0.687 5.687 14 C 0.693 3.307 15 O -0.575 6.575 16 N -0.706 5.706 17 C 0.253 3.747 18 H 0.051 0.949 19 C -0.163 4.163 20 C -0.539 4.539 21 H 0.080 0.920 22 C 0.080 3.920 23 N -0.890 5.890 24 Si 0.886 3.114 25 H -0.275 1.275 26 H -0.293 1.293 27 H -0.261 1.261 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.145 0.855 32 H 0.417 0.583 33 H 0.419 0.581 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.161 0.839 38 H 0.409 0.591 39 H 0.394 0.606 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.066 21.713 10.461 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.161 4.161 3 C -0.012 4.012 4 C -0.796 4.796 5 S 2.798 3.202 6 N -0.925 5.925 7 O -0.953 6.953 8 O -0.961 6.961 9 C 0.032 3.968 10 C -0.229 4.229 11 C -0.177 4.177 12 C 0.150 3.850 13 N -0.332 5.332 14 C 0.393 3.607 15 O -0.452 6.452 16 N -0.357 5.357 17 C 0.149 3.851 18 H 0.069 0.931 19 C -0.221 4.221 20 C -0.577 4.577 21 H 0.098 0.902 22 C -0.124 4.124 23 N -0.526 5.526 24 Si 0.715 3.285 25 H -0.202 1.202 26 H -0.220 1.220 27 H -0.186 1.186 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.163 0.837 32 H 0.244 0.756 33 H 0.249 0.751 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.178 0.822 38 H 0.245 0.755 39 H 0.228 0.772 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.883 22.018 9.019 24.510 hybrid contribution -0.163 -1.300 0.844 1.558 sum 5.720 20.718 9.863 23.648 Atomic orbital electron populations 1.20726 0.90254 1.03537 1.02540 1.19622 0.96506 0.91444 1.08487 1.20520 0.91490 0.98073 0.91107 1.29949 1.05763 1.18061 1.25871 1.01247 0.73420 0.72972 0.72548 1.53072 1.67764 1.32697 1.39018 1.93551 1.59964 1.86135 1.55662 1.93562 1.61031 1.55408 1.86136 1.19416 0.95743 0.91193 0.90491 1.21632 0.90297 1.07227 1.03741 1.21541 0.92616 0.99663 1.03877 1.17726 0.91525 0.84222 0.91552 1.43071 1.18857 1.06802 1.64520 1.16146 0.84612 0.80461 0.79473 1.90864 1.20488 1.85051 1.48819 1.45543 1.22470 1.05793 1.61903 1.19086 0.92749 0.80688 0.92557 0.93109 1.22484 0.99209 0.99603 1.00810 1.20989 0.93844 0.97902 1.44929 0.90157 1.24815 0.97748 0.95691 0.94193 1.69858 1.33217 1.06573 1.43002 0.86870 0.85360 0.78846 0.77400 1.20226 1.22028 1.18592 0.90946 0.90698 0.91433 0.83691 0.75643 0.75146 0.89993 0.89330 0.87625 0.82186 0.75486 0.77213 0.94479 0.92758 0.93225 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.45 36.00 0.34 -0.60 16 2 C -0.16 -1.77 5.90 -104.44 -0.62 -2.38 16 3 C 0.01 0.09 9.20 -39.61 -0.36 -0.27 16 4 C -0.71 -7.91 5.88 -39.55 -0.23 -8.14 16 5 S 2.71 26.86 5.58 -107.50 -0.60 26.26 16 6 N -1.25 -6.87 9.39 60.35 0.57 -6.30 16 7 O -0.96 -12.43 15.37 -57.17 -0.88 -13.31 16 8 O -0.97 -12.07 16.96 -57.17 -0.97 -13.04 16 9 C 0.03 0.41 5.87 -104.65 -0.61 -0.20 16 10 C -0.17 -1.75 9.40 36.01 0.34 -1.41 16 11 C -0.16 -2.23 8.37 -39.39 -0.33 -2.56 16 12 C 0.25 3.37 6.41 -83.69 -0.54 2.83 16 13 N -0.69 -9.17 4.99 -14.23 -0.07 -9.24 16 14 C 0.69 12.28 8.33 -86.92 -0.72 11.55 16 15 O -0.57 -12.12 13.17 5.29 0.07 -12.05 16 16 N -0.71 -12.96 5.07 -59.81 -0.30 -13.26 16 17 C 0.25 5.72 2.15 -69.08 -0.15 5.57 16 18 H 0.05 1.28 6.64 -51.93 -0.34 0.94 16 19 C -0.16 -3.44 8.96 37.16 0.33 -3.11 16 20 C -0.54 -13.97 9.31 -34.44 -0.32 -14.29 16 21 H 0.08 2.19 7.98 -52.48 -0.42 1.77 16 22 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 23 N -0.89 -25.67 13.96 55.43 0.77 -24.90 16 24 Si 0.89 21.10 24.37 -169.99 -4.14 16.95 16 25 H -0.28 -6.33 6.87 56.52 0.39 -5.94 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.26 -6.17 6.53 56.52 0.37 -5.81 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.07 0.56 6.98 -51.93 -0.36 0.20 16 31 H 0.15 1.35 7.33 -52.49 -0.38 0.97 16 32 H 0.42 1.48 8.92 -34.47 -0.31 1.18 16 33 H 0.42 1.46 8.96 -34.47 -0.31 1.15 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.11 1.11 4.83 -51.93 -0.25 0.86 16 37 H 0.16 2.60 5.79 -52.49 -0.30 2.29 16 38 H 0.41 4.07 7.41 -40.82 -0.30 3.76 16 39 H 0.39 6.17 8.56 -40.82 -0.35 5.82 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -35.83 357.76 -8.35 -44.18 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.22 Total: 10.27 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.97 Total: -10.95 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.97 Total: -53.70 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.78 Total: -38.40 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.14 Total: 16.95 kcal Atomic # 16 Polarization: 26.86 SS G_CDS: -0.60 Total: 26.26 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.83 -8.35 -44.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477070751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.493 kcal (2) G-P(sol) polarization free energy of solvation -35.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds