Wall clock time and date at job start Sat Apr 11 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38133 * 120.03184 * 2 1 4 4 C 1.38264 * 120.06615 * 180.02562 * 3 2 1 5 5 S 1.76198 * 119.92889 * 180.02562 * 4 3 2 6 6 N 1.65596 * 107.22189 * 114.99770 * 5 4 3 7 7 O 1.42101 * 106.40171 * 228.54099 * 5 4 3 8 8 O 1.42102 * 106.40239 * 1.45731 * 5 4 3 9 9 C 1.38300 * 120.13878 * 359.97438 * 4 3 2 10 10 C 1.50704 * 119.96203 * 180.02562 * 9 4 3 11 11 C 1.38089 * 120.07461 * 359.74627 * 9 4 3 12 12 C 1.38843 * 120.03399 * 180.02562 * 2 1 3 13 13 N 1.39946 * 120.07392 * 359.95387 * 12 2 1 14 14 C 1.34767 * 119.99993 * 155.46208 * 13 12 2 15 15 O 1.21586 * 120.00318 * 354.38126 * 14 13 12 16 16 N 1.34785 * 120.00050 * 174.38279 * 14 13 12 17 17 C 1.46497 * 120.00238 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.46984 * 34.99568 * 17 16 14 19 19 C 1.53005 * 109.46897 * 274.99569 * 17 16 14 20 20 C 1.50691 * 109.47295 * 155.00058 * 17 16 14 21 21 H 1.08000 * 120.00263 * 359.97438 * 20 17 16 22 22 C 1.37872 * 120.00349 * 180.02562 * 20 17 16 23 23 N 1.31514 * 119.99782 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 120.00453 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47120 * 89.99470 * 24 22 20 26 26 H 1.48496 * 109.47075 * 209.99307 * 24 22 20 27 27 H 1.48498 * 109.46988 * 329.99559 * 24 22 20 28 28 H 1.09000 * 109.46856 * 269.97613 * 1 2 3 29 29 H 1.08998 * 109.46818 * 29.98011 * 1 2 3 30 30 H 1.08998 * 109.46553 * 149.97760 * 1 2 3 31 31 H 1.07992 * 119.96761 * 359.97438 * 3 2 1 32 32 H 0.97007 * 119.99692 * 0.02562 * 6 5 4 33 33 H 0.96995 * 120.00558 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47326 * 90.00227 * 10 9 4 35 35 H 1.09005 * 109.46846 * 210.00385 * 10 9 4 36 36 H 1.08998 * 109.47028 * 329.99712 * 10 9 4 37 37 H 1.08001 * 120.04001 * 180.26857 * 11 9 4 38 38 H 0.97004 * 119.99287 * 335.46296 * 13 12 2 39 39 H 0.97000 * 119.99462 * 359.97438 * 16 14 13 40 40 H 1.09001 * 109.47191 * 300.00339 * 19 17 16 41 41 H 1.08997 * 109.46959 * 179.97438 * 19 17 16 42 42 H 1.09003 * 109.46865 * 60.00284 * 19 17 16 43 43 H 0.97002 * 120.00326 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5811 1.1967 -0.0005 5 16 4.4593 2.7242 0.0001 6 7 5.2836 2.8152 1.4334 7 8 5.4413 2.6230 -1.0219 8 8 3.4778 3.7513 0.0359 9 6 4.2762 0.0011 -0.0005 10 6 5.7832 0.0066 -0.0005 11 6 3.5909 -1.1978 0.0053 12 6 2.2020 -1.2020 -0.0005 13 7 1.5046 -2.4153 -0.0001 14 6 2.0889 -3.5286 -0.4853 15 8 3.1806 -3.4603 -1.0161 16 7 1.4630 -4.7178 -0.3821 17 6 2.0984 -5.9282 -0.9090 18 1 3.1772 -5.8632 -0.7673 19 6 1.7869 -6.0594 -2.4012 20 6 1.5672 -7.1336 -0.1772 21 1 0.8304 -7.0106 0.6027 22 6 2.0227 -8.3936 -0.5025 23 7 2.9204 -8.5435 -1.4518 24 14 1.3648 -9.8879 0.4051 25 1 0.1673 -10.4089 -0.3019 26 1 2.4110 -10.9408 0.4487 27 1 0.9930 -9.5018 1.7900 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3632 -0.8898 -0.5142 31 1 1.6585 2.1311 -0.0004 32 1 5.2166 2.0934 2.0781 33 1 5.8341 3.5897 1.6281 34 1 6.1466 0.0079 1.0271 35 1 6.1498 -0.8820 -0.5145 36 1 6.1432 0.8979 -0.5144 37 1 4.1343 -2.1311 0.0097 38 1 0.6006 -2.4548 0.3494 39 1 0.5922 -4.7724 0.0417 40 1 0.7081 -6.1242 -2.5429 41 1 2.2600 -6.9596 -2.7933 42 1 2.1711 -5.1874 -2.9306 43 1 3.2406 -9.4300 -1.6810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477070752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:56 Heat of formation + Delta-G solvation = -81.271948 kcal Electronic energy + Delta-G solvation = -27581.298857 eV Core-core repulsion = 23560.473154 eV Total energy + Delta-G solvation = -4020.825704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.71145 -38.87957 -37.36318 -35.97462 -35.56189 -34.82839 -33.60946 -33.17460 -32.57528 -30.30486 -29.47261 -28.48218 -25.36039 -25.14005 -23.79469 -21.71135 -21.20916 -20.05751 -19.60507 -18.48075 -18.03406 -17.56825 -17.22987 -16.28259 -16.08606 -15.92175 -15.42357 -15.07412 -14.87233 -14.36745 -14.17122 -14.03758 -13.55696 -13.37556 -13.32529 -13.02926 -12.78217 -12.53262 -12.36515 -12.26745 -12.19745 -12.11172 -11.84902 -11.57421 -11.46764 -11.19625 -11.09516 -10.88112 -10.80266 -10.69626 -10.55515 -10.37753 -10.32787 -9.57882 -9.16115 -8.71843 -8.67416 -8.38584 -8.00113 -6.22158 -4.32183 0.28324 0.75197 1.23791 2.83768 2.96994 3.17741 3.20034 3.25371 3.27142 3.49684 3.76873 4.23083 4.38248 4.55957 4.68623 4.76926 4.89467 5.06242 5.10769 5.23069 5.36102 5.39620 5.47311 5.55872 5.73300 5.78653 5.81030 5.90106 6.09123 6.19585 6.24209 6.46572 6.66538 6.76385 6.85365 6.94805 6.96090 7.06588 7.28281 7.50733 7.67944 7.83807 8.03768 8.54481 8.68665 8.99931 9.35653 10.83847 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.002404 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.755101 B =11645.637579 C =12204.905614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.159 4.159 3 C 0.008 3.992 4 C -0.707 4.707 5 S 2.707 3.293 6 N -1.251 6.251 7 O -0.964 6.964 8 O -0.973 6.973 9 C 0.034 3.966 10 C -0.173 4.173 11 C -0.155 4.155 12 C 0.251 3.749 13 N -0.689 5.689 14 C 0.690 3.310 15 O -0.573 6.573 16 N -0.713 5.713 17 C 0.280 3.720 18 H 0.051 0.949 19 C -0.149 4.149 20 C -0.537 4.537 21 H 0.061 0.939 22 C 0.067 3.933 23 N -0.882 5.882 24 Si 0.904 3.096 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.145 0.855 32 H 0.417 0.583 33 H 0.418 0.582 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.162 0.838 38 H 0.407 0.593 39 H 0.388 0.612 40 H 0.027 0.973 41 H 0.092 0.908 42 H 0.015 0.985 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 19.944 7.597 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.163 4.163 3 C -0.012 4.012 4 C -0.798 4.798 5 S 2.798 3.202 6 N -0.926 5.926 7 O -0.953 6.953 8 O -0.962 6.962 9 C 0.032 3.968 10 C -0.229 4.229 11 C -0.176 4.176 12 C 0.151 3.849 13 N -0.334 5.334 14 C 0.390 3.610 15 O -0.450 6.450 16 N -0.364 5.364 17 C 0.178 3.822 18 H 0.069 0.931 19 C -0.208 4.208 20 C -0.575 4.575 21 H 0.080 0.920 22 C -0.136 4.136 23 N -0.519 5.519 24 Si 0.731 3.269 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.162 0.838 32 H 0.244 0.756 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.179 0.821 38 H 0.243 0.757 39 H 0.220 0.780 40 H 0.046 0.954 41 H 0.111 0.889 42 H 0.035 0.965 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.197 20.275 6.129 21.182 hybrid contribution -1.375 -1.727 1.393 2.610 sum -1.177 18.548 7.522 20.050 Atomic orbital electron populations 1.20711 0.90377 1.03379 1.02456 1.19607 0.96421 0.91490 1.08815 1.20496 0.91497 0.98014 0.91228 1.29920 1.05738 1.18011 1.26106 1.01233 0.73417 0.72984 0.72543 1.53071 1.67721 1.32696 1.39066 1.93551 1.59969 1.86155 1.55670 1.93559 1.61049 1.55474 1.86159 1.19421 0.95754 0.91187 0.90438 1.21634 0.90302 1.07226 1.03749 1.21581 0.92659 0.99720 1.03690 1.17742 0.91560 0.84287 0.91313 1.43155 1.18740 1.06900 1.64627 1.16210 0.84715 0.80486 0.79587 1.90867 1.20412 1.84825 1.48879 1.45961 1.22490 1.06417 1.61540 1.18746 0.94451 0.78324 0.90630 0.93118 1.22120 0.99098 1.01329 0.98256 1.21168 1.25562 0.90730 1.20068 0.92034 1.24880 0.94712 0.98986 0.95060 1.69896 1.29105 1.23491 1.29381 0.86413 0.78603 0.81950 0.79919 1.20489 1.20986 1.19860 0.91023 0.90789 0.91550 0.83782 0.75618 0.75176 0.89992 0.89249 0.87686 0.82070 0.75727 0.77994 0.95427 0.88942 0.96540 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.45 36.01 0.34 -0.63 16 2 C -0.16 -1.89 5.90 -104.43 -0.62 -2.50 16 3 C 0.01 0.09 9.20 -39.61 -0.36 -0.27 16 4 C -0.71 -8.36 5.88 -39.55 -0.23 -8.59 16 5 S 2.71 28.24 5.58 -107.50 -0.60 27.64 16 6 N -1.25 -7.53 9.39 60.35 0.57 -6.96 16 7 O -0.96 -12.91 15.37 -57.17 -0.88 -13.79 16 8 O -0.97 -12.49 16.96 -57.17 -0.97 -13.46 16 9 C 0.03 0.45 5.87 -104.65 -0.61 -0.17 16 10 C -0.17 -1.89 9.40 36.01 0.34 -1.55 16 11 C -0.16 -2.38 8.37 -39.39 -0.33 -2.71 16 12 C 0.25 3.59 6.41 -83.69 -0.54 3.05 16 13 N -0.69 -9.77 4.99 -14.22 -0.07 -9.84 16 14 C 0.69 13.03 8.33 -86.92 -0.72 12.30 16 15 O -0.57 -12.93 13.17 5.29 0.07 -12.86 16 16 N -0.71 -13.84 5.07 -59.82 -0.30 -14.14 16 17 C 0.28 6.79 2.56 -69.09 -0.18 6.62 16 18 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 19 C -0.15 -3.60 9.26 37.16 0.34 -3.25 16 20 C -0.54 -13.61 8.73 -34.45 -0.30 -13.91 16 21 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 22 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 23 N -0.88 -24.09 11.32 55.43 0.63 -23.46 16 24 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.07 0.56 6.98 -51.93 -0.36 0.20 16 31 H 0.14 1.41 7.32 -52.49 -0.38 1.03 16 32 H 0.42 1.73 8.92 -34.47 -0.31 1.42 16 33 H 0.42 1.65 8.96 -34.47 -0.31 1.34 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 36 H 0.10 1.17 4.83 -51.93 -0.25 0.92 16 37 H 0.16 2.83 5.79 -52.49 -0.30 2.53 16 38 H 0.41 4.32 7.41 -40.82 -0.30 4.02 16 39 H 0.39 6.31 8.56 -40.82 -0.35 5.96 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -34.74 364.58 -9.40 -44.15 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -5.35 Total: 12.25 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.97 Total: -9.95 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.82 Total: -54.41 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.78 Total: -40.11 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 28.24 SS G_CDS: -0.60 Total: 27.64 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.74 -9.40 -44.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477070752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.124 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds