Wall clock time and date at job start Sat Apr 11 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00233 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00429 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00538 * 3 2 1 7 7 C 1.38803 * 119.99752 * 180.28287 * 2 1 3 8 8 H 1.08002 * 119.99684 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99509 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46826 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00056 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00048 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00116 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47155 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.51351 * 59.90970 * 15 14 13 17 17 C 1.53101 * 109.50685 * 179.97438 * 15 14 13 18 18 N 1.47009 * 109.25803 * 176.78309 * 17 15 14 19 19 C 1.46900 * 111.00018 * 177.60799 * 18 17 15 20 20 C 1.50702 * 109.47556 * 169.99720 * 19 18 17 21 21 C 1.41382 * 126.80244 * 94.70418 * 20 19 18 22 22 C 1.35441 * 103.98762 * 179.89270 * 21 20 19 23 23 O 1.34048 * 106.44444 * 0.37218 * 22 21 20 24 24 N 1.20916 * 111.56537 * 359.74570 * 23 22 21 25 25 C 1.47015 * 110.75149 * 301.37932 * 18 17 15 26 26 C 1.53092 * 109.25979 * 58.62013 * 25 18 17 27 27 O 1.43013 * 109.50464 * 299.77674 * 15 14 13 28 28 H 0.97005 * 119.99723 * 359.71791 * 1 2 3 29 29 H 1.09000 * 109.47091 * 299.99657 * 10 9 7 30 30 H 1.09001 * 109.47322 * 60.00130 * 10 9 7 31 31 H 0.96998 * 120.00399 * 359.97438 * 13 11 10 32 32 H 1.09006 * 109.46793 * 299.99722 * 14 13 11 33 33 H 1.08993 * 109.47439 * 59.99212 * 14 13 11 34 34 H 1.09001 * 109.50228 * 296.71723 * 17 15 14 35 35 H 1.09000 * 109.50545 * 56.84161 * 17 15 14 36 36 H 1.09003 * 109.47075 * 289.99378 * 19 18 17 37 37 H 1.08994 * 109.47338 * 49.99150 * 19 18 17 38 38 H 1.08003 * 128.00527 * 0.02922 * 21 20 19 39 39 H 1.08002 * 126.77904 * 180.09725 * 22 21 20 40 40 H 1.09004 * 109.50788 * 178.55553 * 25 18 17 41 41 H 1.08999 * 109.50847 * 298.63772 * 25 18 17 42 42 H 1.08997 * 109.50937 * 63.08201 * 26 25 18 43 43 H 1.08995 * 109.51145 * 183.22036 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5479 1.4401 -0.7001 6 1 1.4479 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0064 9 16 1.1292 -2.7280 -0.0128 10 6 2.5158 -3.8914 -0.0180 11 6 1.9872 -5.3027 -0.0250 12 8 0.7909 -5.5022 -0.0268 13 7 2.8439 -6.3431 -0.0292 14 6 2.3301 -7.7151 -0.0366 15 6 3.5021 -8.6985 -0.0409 16 1 4.1116 -8.5425 0.8492 17 6 2.9661 -10.1326 -0.0479 18 7 4.0943 -11.0716 -0.1299 19 6 3.6257 -12.4630 -0.0821 20 6 4.7675 -13.3893 -0.4128 21 6 5.6256 -14.0373 0.5052 22 6 6.4696 -14.7475 -0.2808 23 8 6.1067 -14.5007 -1.5474 24 7 5.1628 -13.7468 -1.6004 25 6 4.8902 -10.8251 -1.3411 26 6 5.4070 -9.3841 -1.3212 27 8 4.2990 -8.4866 -1.2094 28 1 -0.4850 0.8401 0.0041 29 1 3.1243 -3.7274 -0.9073 30 1 3.1244 -3.7354 0.8727 31 1 3.8007 -6.1836 -0.0282 32 1 1.7206 -7.8795 0.8520 33 1 1.7224 -7.8707 -0.9278 34 1 2.4057 -10.3161 0.8688 35 1 2.3126 -10.2727 -0.9090 36 1 3.2541 -12.6871 0.9179 37 1 2.8238 -12.6015 -0.8071 38 1 5.6102 -13.9809 1.5837 39 1 7.2784 -15.3833 0.0479 40 1 5.7344 -11.5141 -1.3685 41 1 4.2677 -10.9770 -2.2229 42 1 6.0726 -9.2479 -0.4689 43 1 5.9496 -9.1792 -2.2441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482181895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:42 Heat of formation + Delta-G solvation = -3.722373 kcal Electronic energy + Delta-G solvation = -26239.267052 eV Core-core repulsion = 22221.804150 eV Total energy + Delta-G solvation = -4017.462902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.47699 -40.26963 -38.93794 -36.89201 -34.67992 -34.21454 -32.39804 -32.24380 -31.83298 -29.72127 -29.08330 -26.60219 -25.43867 -24.80350 -23.75752 -22.87281 -21.33925 -20.93145 -20.14083 -18.27291 -18.19427 -17.83672 -16.91143 -16.73282 -16.30335 -16.10749 -15.81057 -15.48264 -14.98829 -14.82865 -14.77718 -14.66659 -14.26945 -13.90719 -13.80197 -13.25637 -13.13530 -12.92094 -12.82222 -12.63752 -12.45914 -11.86840 -11.80044 -11.70366 -11.56400 -11.03760 -10.99671 -10.97304 -10.74041 -10.68550 -10.17624 -10.02318 -9.78238 -9.36421 -9.04034 -8.95089 -8.83325 -8.19772 -6.46223 -6.18666 -3.88770 0.97856 1.63899 2.75322 3.00143 3.15064 3.24212 3.25152 3.31427 3.36641 3.39367 3.61428 3.77987 3.97217 4.23549 4.47514 4.48899 4.53033 4.64456 4.70234 4.74184 4.81899 4.90808 5.01142 5.05224 5.13108 5.16459 5.22341 5.23335 5.30429 5.36171 5.45573 5.47910 5.59924 5.68494 5.86306 5.95331 6.19913 6.29410 6.34048 6.62983 6.83142 7.62784 7.73254 7.77568 8.38461 8.66481 9.26670 10.88781 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.039689 B = 0.001617 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.313165 B =17314.581239 C =17723.242112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.533 3.467 12 O -0.521 6.521 13 N -0.732 5.732 14 C 0.132 3.868 15 C 0.085 3.915 16 H 0.076 0.924 17 C 0.026 3.974 18 N -0.529 5.529 19 C 0.132 3.868 20 C 0.017 3.983 21 C -0.218 4.218 22 C -0.061 4.061 23 O 0.101 5.899 24 N -0.360 5.360 25 C 0.017 3.983 26 C 0.066 3.934 27 O -0.373 6.373 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.402 0.598 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.174 0.826 39 H 0.218 0.782 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.272 -31.763 1.751 35.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.208 1.208 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.319 3.681 12 O -0.395 6.395 13 N -0.387 5.387 14 C 0.007 3.993 15 C 0.026 3.974 16 H 0.094 0.906 17 C -0.102 4.102 18 N -0.255 5.255 19 C 0.004 3.996 20 C -0.141 4.141 21 C -0.240 4.240 22 C -0.142 4.142 23 O 0.034 5.966 24 N -0.064 5.064 25 C -0.111 4.111 26 C -0.011 4.011 27 O -0.292 6.292 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.236 0.764 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.191 0.809 39 H 0.234 0.766 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.926 -31.483 0.763 34.042 hybrid contribution 2.226 0.711 0.443 2.379 sum 15.152 -30.771 1.205 34.321 Atomic orbital electron populations 1.70025 1.05944 1.27401 1.46957 1.24992 0.95025 0.99008 0.94573 0.86166 0.79422 0.81586 0.78314 1.20297 1.19702 1.20767 1.22882 0.94937 0.91684 1.58824 0.90915 1.85378 1.05026 0.96308 1.96713 1.23521 1.06504 0.95301 1.04979 1.20298 0.86457 0.86278 0.75085 1.90699 1.15377 1.85629 1.47815 1.45824 1.10228 1.04915 1.77693 1.21223 0.94180 0.80734 1.03175 1.22390 0.92728 0.92930 0.89350 0.90576 1.22736 0.92382 0.92098 1.03014 1.62343 1.22220 1.02214 1.38744 1.20456 0.91340 0.85135 1.02683 1.23441 1.00718 1.01241 0.88749 1.22748 0.97563 1.01303 1.02337 1.26072 1.02356 1.02703 0.83114 1.84858 1.35719 1.47403 1.28657 1.73933 1.01818 1.07516 1.23115 1.22865 0.98617 0.98438 0.91218 1.22655 0.88635 0.87230 1.02598 1.88087 1.41092 1.56492 1.43533 0.92221 0.89160 0.89217 0.76405 0.89922 0.90888 0.88713 0.92953 0.87899 0.92527 0.80902 0.76596 0.89888 0.93406 0.92193 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 11 C 0.53 10.25 7.85 -10.99 -0.09 10.16 16 12 O -0.52 -12.05 15.86 5.55 0.09 -11.96 16 13 N -0.73 -10.35 5.45 -60.29 -0.33 -10.68 16 14 C 0.13 1.57 5.37 -4.04 -0.02 1.55 16 15 C 0.08 0.80 2.89 -26.68 -0.08 0.72 16 16 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 17 C 0.03 0.21 4.91 -3.71 -0.02 0.19 16 18 N -0.53 -4.19 4.87 -235.75 -1.15 -5.34 16 19 C 0.13 0.90 5.87 -4.98 -0.03 0.87 16 20 C 0.02 0.13 5.31 -82.10 -0.44 -0.31 16 21 C -0.22 -1.09 11.12 -39.38 -0.44 -1.53 16 22 C -0.06 -0.24 12.30 29.73 0.37 0.13 16 23 O 0.10 0.72 11.20 17.16 0.19 0.91 16 24 N -0.36 -3.18 10.89 33.42 0.36 -2.82 16 25 C 0.02 0.15 5.00 -3.71 -0.02 0.13 16 26 C 0.07 0.57 7.01 37.20 0.26 0.83 16 27 O -0.37 -4.05 10.23 -35.23 -0.36 -4.41 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 30 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.40 4.79 8.36 -40.82 -0.34 4.44 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 38 H 0.17 0.50 8.06 -52.48 -0.42 0.08 16 39 H 0.22 -0.10 8.06 -52.49 -0.42 -0.52 16 40 H 0.08 0.74 6.06 -51.93 -0.31 0.42 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -36.77 376.22 -8.22 -44.98 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.12 Total: -0.04 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.08 Total: -3.34 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.38 Total: -44.53 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.08 Total: -15.45 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.77 -8.22 -44.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482181895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.262 kcal (2) G-P(sol) polarization free energy of solvation -36.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds