Wall clock time and date at job start Sat Apr 11 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00233 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00429 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00538 * 3 2 1 7 7 C 1.38803 * 119.99752 * 180.28287 * 2 1 3 8 8 H 1.08002 * 119.99684 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99509 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46826 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00056 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00048 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00116 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47155 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.51351 * 59.90970 * 15 14 13 17 17 C 1.53101 * 109.50685 * 179.97438 * 15 14 13 18 18 N 1.47009 * 109.25803 * 176.78309 * 17 15 14 19 19 C 1.46900 * 111.00018 * 177.60799 * 18 17 15 20 20 C 1.50702 * 109.47556 * 169.99720 * 19 18 17 21 21 C 1.41382 * 126.80244 * 94.70418 * 20 19 18 22 22 C 1.35441 * 103.98762 * 179.89270 * 21 20 19 23 23 O 1.34048 * 106.44444 * 0.37218 * 22 21 20 24 24 N 1.20916 * 111.56537 * 359.74570 * 23 22 21 25 25 C 1.47015 * 110.75149 * 301.37932 * 18 17 15 26 26 C 1.53092 * 109.25979 * 58.62013 * 25 18 17 27 27 O 1.43013 * 109.50464 * 299.77674 * 15 14 13 28 28 H 0.97005 * 119.99723 * 359.71791 * 1 2 3 29 29 H 1.09000 * 109.47091 * 299.99657 * 10 9 7 30 30 H 1.09001 * 109.47322 * 60.00130 * 10 9 7 31 31 H 0.96998 * 120.00399 * 359.97438 * 13 11 10 32 32 H 1.09006 * 109.46793 * 299.99722 * 14 13 11 33 33 H 1.08993 * 109.47439 * 59.99212 * 14 13 11 34 34 H 1.09001 * 109.50228 * 296.71723 * 17 15 14 35 35 H 1.09000 * 109.50545 * 56.84161 * 17 15 14 36 36 H 1.09003 * 109.47075 * 289.99378 * 19 18 17 37 37 H 1.08994 * 109.47338 * 49.99150 * 19 18 17 38 38 H 1.08003 * 128.00527 * 0.02922 * 21 20 19 39 39 H 1.08002 * 126.77904 * 180.09725 * 22 21 20 40 40 H 1.09004 * 109.50788 * 178.55553 * 25 18 17 41 41 H 1.08999 * 109.50847 * 298.63772 * 25 18 17 42 42 H 1.08997 * 109.50937 * 63.08201 * 26 25 18 43 43 H 1.08995 * 109.51145 * 183.22036 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5479 1.4401 -0.7001 6 1 1.4479 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0064 9 16 1.1292 -2.7280 -0.0128 10 6 2.5158 -3.8914 -0.0180 11 6 1.9872 -5.3027 -0.0250 12 8 0.7909 -5.5022 -0.0268 13 7 2.8439 -6.3431 -0.0292 14 6 2.3301 -7.7151 -0.0366 15 6 3.5021 -8.6985 -0.0409 16 1 4.1116 -8.5425 0.8492 17 6 2.9661 -10.1326 -0.0479 18 7 4.0943 -11.0716 -0.1299 19 6 3.6257 -12.4630 -0.0821 20 6 4.7675 -13.3893 -0.4128 21 6 5.6256 -14.0373 0.5052 22 6 6.4696 -14.7475 -0.2808 23 8 6.1067 -14.5007 -1.5474 24 7 5.1628 -13.7468 -1.6004 25 6 4.8902 -10.8251 -1.3411 26 6 5.4070 -9.3841 -1.3212 27 8 4.2990 -8.4866 -1.2094 28 1 -0.4850 0.8401 0.0041 29 1 3.1243 -3.7274 -0.9073 30 1 3.1244 -3.7354 0.8727 31 1 3.8007 -6.1836 -0.0282 32 1 1.7206 -7.8795 0.8520 33 1 1.7224 -7.8707 -0.9278 34 1 2.4057 -10.3161 0.8688 35 1 2.3126 -10.2727 -0.9090 36 1 3.2541 -12.6871 0.9179 37 1 2.8238 -12.6015 -0.8071 38 1 5.6102 -13.9809 1.5837 39 1 7.2784 -15.3833 0.0479 40 1 5.7344 -11.5141 -1.3685 41 1 4.2677 -10.9770 -2.2229 42 1 6.0726 -9.2479 -0.4689 43 1 5.9496 -9.1792 -2.2441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482181895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:41 Heat of formation + Delta-G solvation = -32.676424 kcal Electronic energy + Delta-G solvation = -26240.522594 eV Core-core repulsion = 22221.804150 eV Total energy + Delta-G solvation = -4018.718444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.93514 -41.10737 -40.30958 -37.57841 -35.88572 -34.72029 -34.57570 -32.98970 -32.53056 -30.91299 -29.99435 -27.79063 -27.33325 -25.48695 -24.28441 -23.59234 -22.00658 -21.75427 -21.30427 -19.83941 -18.70940 -18.69130 -17.92157 -17.73259 -17.44331 -17.09708 -16.87064 -16.47207 -16.36656 -16.14922 -15.93415 -15.50985 -15.23554 -14.99650 -14.62794 -14.35610 -14.31152 -14.26819 -13.71174 -13.40894 -13.29593 -13.18259 -13.15644 -12.87773 -12.62740 -12.49904 -12.31597 -12.26219 -11.75552 -11.66902 -11.18464 -11.13383 -11.00791 -10.74136 -10.53919 -10.27227 -10.14058 -9.59388 -8.65804 -8.33874 -6.11922 0.59644 1.22050 1.27941 1.43258 1.47405 1.58109 1.61579 2.20867 2.28677 2.46562 2.60618 2.74595 3.00208 3.15782 3.32938 3.53889 3.74611 3.78260 3.85497 3.98790 4.03967 4.09864 4.23863 4.28923 4.30495 4.37988 4.44846 4.50490 4.52312 4.57755 4.61211 4.63082 4.72719 4.82575 4.88367 4.94165 5.16375 5.38239 5.42806 5.67714 5.70982 6.08587 6.20745 6.49071 7.07361 7.23124 7.32613 8.75397 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.039689 B = 0.001617 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.313165 B =17314.581239 C =17723.242112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.278 1.278 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.129 4.129 11 C 0.535 3.465 12 O -0.566 6.566 13 N -0.708 5.708 14 C 0.131 3.869 15 C 0.094 3.906 16 H 0.091 0.909 17 C 0.028 3.972 18 N -0.526 5.526 19 C 0.131 3.869 20 C 0.003 3.997 21 C -0.227 4.227 22 C -0.047 4.047 23 O 0.086 5.914 24 N -0.398 5.398 25 C 0.024 3.976 26 C 0.066 3.934 27 O -0.395 6.395 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.416 0.584 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.116 0.884 35 H 0.041 0.959 36 H 0.125 0.875 37 H 0.045 0.955 38 H 0.195 0.805 39 H 0.260 0.740 40 H 0.081 0.919 41 H 0.027 0.973 42 H 0.071 0.929 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.114 -32.591 2.990 37.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.192 1.192 5 H -0.183 1.183 6 H -0.203 1.203 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.281 4.281 11 C 0.321 3.679 12 O -0.445 6.445 13 N -0.361 5.361 14 C 0.007 3.993 15 C 0.035 3.965 16 H 0.109 0.891 17 C -0.100 4.100 18 N -0.251 5.251 19 C 0.003 3.997 20 C -0.155 4.155 21 C -0.249 4.249 22 C -0.127 4.127 23 O 0.021 5.979 24 N -0.104 5.104 25 C -0.104 4.104 26 C -0.011 4.011 27 O -0.314 6.314 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.253 0.747 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.059 0.941 36 H 0.143 0.857 37 H 0.064 0.936 38 H 0.212 0.788 39 H 0.275 0.725 40 H 0.099 0.901 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.825 -32.361 2.001 36.079 hybrid contribution 1.418 0.785 0.061 1.622 sum 17.243 -31.576 2.063 36.037 Atomic orbital electron populations 1.70189 1.07966 1.28602 1.47997 1.26133 0.95975 1.03310 0.93714 0.84943 0.78152 0.75979 0.78835 1.19183 1.18294 1.20298 1.23220 0.95378 0.92035 1.58901 0.89920 1.85547 1.10514 0.99187 1.97047 1.23365 1.03571 0.94338 1.06777 1.20037 0.86160 0.86638 0.75100 1.90689 1.17296 1.86103 1.50403 1.45591 1.10401 1.04840 1.75306 1.21365 0.95350 0.79705 1.02923 1.22303 0.91815 0.92831 0.89517 0.89098 1.22722 0.92339 0.91311 1.03632 1.62385 1.22022 1.02794 1.37948 1.20544 0.91088 0.84468 1.03556 1.23693 1.01158 1.01535 0.89160 1.23071 0.97259 1.01262 1.03266 1.26893 1.02391 1.01831 0.81623 1.84808 1.35476 1.47311 1.30347 1.73939 1.03089 1.08986 1.24344 1.22749 0.98314 0.98510 0.90837 1.22762 0.88121 0.86646 1.03526 1.88050 1.41908 1.57287 1.44190 0.91989 0.87528 0.86996 0.74703 0.88999 0.92430 0.86603 0.94107 0.85729 0.93650 0.78785 0.72461 0.90062 0.95473 0.91085 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.43 13.22 21.65 0.29 -56.15 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.66 9.50 67.96 0.65 -31.02 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.46 20.57 -56.49 -1.16 -9.63 16 10 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 11 C 0.53 20.29 7.85 87.66 0.69 20.98 16 12 O -0.57 -26.65 15.86 -3.06 -0.05 -26.70 16 13 N -0.71 -18.92 5.45 -463.05 -2.52 -21.44 16 14 C 0.13 2.96 5.37 86.38 0.46 3.43 16 15 C 0.09 1.59 2.89 30.63 0.09 1.68 16 16 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 17 C 0.03 0.41 4.91 86.32 0.42 0.84 16 18 N -0.53 -7.61 4.87 -899.79 -4.38 -11.99 16 19 C 0.13 1.66 5.87 85.56 0.50 2.16 16 20 C 0.00 0.03 5.31 43.58 0.23 0.27 16 21 C -0.23 -1.77 11.12 22.40 0.25 -1.53 16 22 C -0.05 -0.25 12.30 67.17 0.83 0.57 16 23 O 0.09 1.16 11.20 71.57 0.80 1.96 16 24 N -0.40 -6.99 10.89 -49.57 -0.54 -7.53 16 25 C 0.02 0.41 5.00 86.31 0.43 0.84 16 26 C 0.07 1.05 7.01 72.01 0.50 1.55 16 27 O -0.40 -8.01 10.23 -148.98 -1.52 -9.54 16 28 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 29 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 30 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 31 H 0.42 8.88 8.36 -92.71 -0.77 8.10 16 32 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.67 8.08 -2.39 -0.02 0.65 16 38 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.26 -1.20 8.06 -2.91 -0.02 -1.22 16 40 H 0.08 1.41 6.06 -2.38 -0.01 1.39 16 41 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -82.52 376.22 -0.85 -83.36 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.26 Total: 15.46 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 5.96 Total: -3.81 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -7.16 Total: -97.11 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.77 Total: -34.27 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.63 kcal Total: -82.52 -0.85 -83.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482181895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.687 kcal (2) G-P(sol) polarization free energy of solvation -82.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds