Wall clock time and date at job start Sat Apr 11 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35450 * 126.77573 * 2 1 4 4 C 1.41382 * 103.98724 * 180.09651 * 3 2 1 5 5 C 1.50698 * 126.80382 * 179.89091 * 4 3 2 6 6 C 1.50694 * 109.47166 * 124.70753 * 5 4 3 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 179.97438 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72721 * 8 6 5 10 10 C 1.53001 * 109.47084 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47182 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.46744 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99679 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00435 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00117 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47323 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00138 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99962 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00087 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99819 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00088 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47297 * 59.99387 * 21 19 17 23 23 H 1.48497 * 109.47226 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46692 * 300.00131 * 21 19 17 25 25 N 1.30178 * 106.39044 * 359.62386 * 4 3 2 26 26 O 1.20921 * 111.60707 * 0.24071 * 25 4 3 27 27 H 1.08998 * 109.46624 * 180.30469 * 1 2 3 28 28 H 1.08999 * 109.46949 * 300.30357 * 1 2 3 29 29 H 1.09002 * 109.46972 * 60.30050 * 1 2 3 30 30 H 1.08005 * 128.00854 * 359.96438 * 3 2 1 31 31 H 1.08998 * 109.46890 * 4.70743 * 5 4 3 32 32 H 1.09002 * 109.46875 * 244.70546 * 5 4 3 33 33 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 34 34 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 35 35 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 36 36 H 1.09007 * 109.46593 * 299.99743 * 10 9 8 37 37 H 1.08993 * 109.47372 * 59.99485 * 10 9 8 38 38 H 1.08993 * 109.47057 * 299.99535 * 11 10 9 39 39 H 1.09001 * 109.47095 * 59.99863 * 11 10 9 40 40 H 0.96998 * 120.00761 * 0.02562 * 12 11 10 41 41 H 1.09001 * 109.47588 * 300.00385 * 15 13 12 42 42 H 1.09006 * 109.46874 * 59.99725 * 15 13 12 43 43 H 0.97012 * 119.99813 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0023 5 6 4.9211 1.3001 -0.0056 6 6 5.7662 0.8575 1.1609 7 8 5.3536 0.0068 1.9206 8 7 6.9807 1.4071 1.3602 9 6 7.7998 0.9811 2.4976 10 6 9.1199 1.7546 2.4935 11 6 9.9750 1.3102 3.6819 12 7 11.2393 2.0504 3.6775 13 6 12.1564 1.8232 4.6386 14 8 11.9354 1.0056 5.5068 15 6 13.4572 2.5841 4.6339 16 16 14.4688 2.0586 6.0397 17 6 15.8852 3.0778 5.7955 18 1 15.9209 3.7617 4.9603 19 6 16.9547 3.0026 6.6771 20 7 16.9109 2.1695 7.6952 21 14 18.4560 4.0837 6.4186 22 1 18.0518 5.5118 6.4659 23 1 19.4501 3.8143 7.4883 24 1 19.0599 3.7839 5.0954 25 7 3.4764 -0.7563 0.0048 26 8 2.3095 -1.0736 0.0062 27 1 -0.3632 -1.0277 0.0055 28 1 -0.3633 0.5185 0.8873 29 1 -0.3633 0.5092 -0.8927 30 1 2.0345 2.1271 -0.0005 31 1 4.7162 2.3673 0.0784 32 1 5.4548 1.1046 -0.9357 33 1 7.3105 2.0877 0.7528 34 1 7.2646 1.1815 3.4259 35 1 8.0037 -0.0868 2.4190 36 1 9.6551 1.5547 1.5652 37 1 8.9156 2.8223 2.5724 38 1 9.4396 1.5104 4.6098 39 1 10.1793 0.2424 3.6033 40 1 11.4160 2.7046 2.9835 41 1 13.9926 2.3828 3.7060 42 1 13.2535 3.6522 4.7114 43 1 17.6586 2.1167 8.3111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491601977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:16 Heat of formation + Delta-G solvation = -25.495694 kcal Electronic energy + Delta-G solvation = -24696.167983 eV Core-core repulsion = 20677.760919 eV Total energy + Delta-G solvation = -4018.407064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.29656 -40.11220 -39.19241 -36.45092 -35.06190 -34.51814 -33.81509 -32.43728 -31.88255 -30.04023 -28.89068 -28.23804 -25.64362 -25.20092 -23.49538 -22.18707 -21.69179 -20.40244 -20.09096 -18.15225 -17.84201 -17.64536 -17.16165 -16.67701 -16.42162 -16.20937 -15.63879 -15.55918 -14.89986 -14.80934 -14.70623 -14.24301 -14.03926 -13.84220 -13.74226 -13.50743 -13.37775 -13.14672 -12.86171 -12.69580 -12.65912 -12.30630 -11.96977 -11.94998 -11.50347 -11.34291 -11.05438 -11.04442 -10.77933 -10.65778 -10.20595 -9.83501 -9.70226 -9.50846 -9.43877 -9.07293 -8.93396 -8.24873 -6.51007 -6.22116 -3.93092 1.10390 1.75937 2.21990 2.64835 2.74579 3.05231 3.07496 3.22796 3.27168 3.30763 3.63068 3.69256 3.96416 4.19791 4.32393 4.52803 4.57188 4.59266 4.63680 4.64813 4.69057 4.85010 4.86155 5.02703 5.12953 5.15427 5.18421 5.19675 5.29681 5.38267 5.50557 5.59533 5.62558 5.75525 5.87417 5.87973 5.96604 6.11620 6.55656 7.00833 7.58253 7.66026 7.79152 7.93362 8.34123 8.58395 9.22937 10.85276 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.056946 B = 0.001203 C = 0.001188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.572895 B =23271.000649 C =23558.681950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.035 4.035 3 C -0.231 4.231 4 C 0.024 3.976 5 C -0.061 4.061 6 C 0.513 3.487 7 O -0.521 6.521 8 N -0.731 5.731 9 C 0.122 3.878 10 C -0.142 4.142 11 C 0.124 3.876 12 N -0.740 5.740 13 C 0.531 3.469 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 N -0.336 5.336 26 O 0.105 5.895 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.171 0.829 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.401 0.599 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.734 2.865 -21.757 38.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.253 4.253 4 C -0.135 4.135 5 C -0.102 4.102 6 C 0.297 3.703 7 O -0.396 6.396 8 N -0.384 5.384 9 C -0.002 4.002 10 C -0.180 4.180 11 C -0.001 4.001 12 N -0.395 5.395 13 C 0.317 3.683 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.686 4.686 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 N -0.037 5.037 26 O 0.035 5.965 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.189 0.811 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.236 0.764 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -31.440 -0.261 -19.551 37.024 hybrid contribution 1.216 3.189 -1.803 3.860 sum -30.224 2.928 -21.354 37.122 Atomic orbital electron populations 1.20348 0.84005 1.04807 1.04077 1.24513 0.96472 0.86213 1.02615 1.22331 0.91048 1.01034 1.10842 1.22741 0.95924 0.90228 1.04607 1.19972 0.90569 1.00585 0.99026 1.20326 0.81612 0.81959 0.86381 1.90791 1.71444 1.30897 1.46467 1.45913 1.17981 1.43606 1.30864 1.21249 0.90206 0.99534 0.89194 1.21970 0.95298 1.01055 0.99672 1.21101 0.84307 0.96940 0.97739 1.45960 1.18010 1.44439 1.31083 1.20327 0.84681 0.82669 0.80637 1.90715 1.78263 1.33910 1.36066 1.23531 0.96701 1.02772 1.07402 1.85424 1.14238 1.54608 1.29056 1.22829 1.03257 1.26640 1.15824 0.90978 1.24985 0.98325 0.95758 0.94431 1.70009 1.31830 1.34791 1.13641 0.86228 0.80992 0.80242 0.78057 1.19936 1.20785 1.19937 1.73898 0.96509 1.16129 1.17184 1.84875 1.11336 1.33236 1.67029 0.89808 0.89144 0.89149 0.81124 0.86479 0.86827 0.76434 0.90885 0.90817 0.90435 0.90454 0.91233 0.91223 0.76842 0.89204 0.89211 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.45 36.01 0.38 0.20 16 2 C -0.03 -0.23 7.49 -35.30 -0.26 -0.49 16 3 C -0.23 -1.49 11.05 -39.38 -0.44 -1.93 16 4 C 0.02 0.22 6.10 -82.10 -0.50 -0.28 16 5 C -0.06 -0.35 6.30 -29.04 -0.18 -0.53 16 6 C 0.51 4.65 7.82 -10.98 -0.09 4.56 16 7 O -0.52 -7.47 15.59 5.56 0.09 -7.39 16 8 N -0.73 -4.60 5.56 -60.29 -0.33 -4.93 16 9 C 0.12 0.95 5.67 -4.04 -0.02 0.92 16 10 C -0.14 -0.91 5.44 -26.73 -0.15 -1.05 16 11 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16 12 N -0.74 -9.24 5.56 -60.29 -0.33 -9.57 16 13 C 0.53 9.76 7.85 -10.99 -0.09 9.67 16 14 O -0.52 -11.75 15.86 5.55 0.09 -11.66 16 15 C -0.15 -3.05 6.16 36.00 0.22 -2.82 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 18 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 21 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 N -0.34 -3.95 11.46 33.42 0.38 -3.56 16 26 O 0.11 1.05 11.20 17.19 0.19 1.25 16 27 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 30 H 0.17 0.56 8.06 -52.48 -0.42 0.13 16 31 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.40 1.13 8.47 -40.82 -0.35 0.78 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.40 3.63 8.47 -40.82 -0.35 3.29 16 41 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 42 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 43 H 0.27 7.56 8.31 -40.81 -0.34 7.22 16 LS Contribution 391.86 15.07 5.91 5.91 Total: -1.00 -40.88 391.86 -7.62 -48.50 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.15 Total: -2.11 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.95 Total: -3.40 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.45 Total: -43.52 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.37 Total: -17.80 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -40.88 -7.62 -48.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491601977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.002 kcal (2) G-P(sol) polarization free energy of solvation -40.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds