Wall clock time and date at job start Sat Apr 11 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35450 * 126.77573 * 2 1 4 4 C 1.41382 * 103.98724 * 180.09651 * 3 2 1 5 5 C 1.50698 * 126.80382 * 179.89091 * 4 3 2 6 6 C 1.50694 * 109.47166 * 124.70753 * 5 4 3 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 179.97438 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72721 * 8 6 5 10 10 C 1.53001 * 109.47084 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47182 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.46744 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99679 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00435 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00117 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47323 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00138 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99962 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00087 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99819 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00088 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47297 * 59.99387 * 21 19 17 23 23 H 1.48497 * 109.47226 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46692 * 300.00131 * 21 19 17 25 25 N 1.30178 * 106.39044 * 359.62386 * 4 3 2 26 26 O 1.20921 * 111.60707 * 0.24071 * 25 4 3 27 27 H 1.08998 * 109.46624 * 180.30469 * 1 2 3 28 28 H 1.08999 * 109.46949 * 300.30357 * 1 2 3 29 29 H 1.09002 * 109.46972 * 60.30050 * 1 2 3 30 30 H 1.08005 * 128.00854 * 359.96438 * 3 2 1 31 31 H 1.08998 * 109.46890 * 4.70743 * 5 4 3 32 32 H 1.09002 * 109.46875 * 244.70546 * 5 4 3 33 33 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 34 34 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 35 35 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 36 36 H 1.09007 * 109.46593 * 299.99743 * 10 9 8 37 37 H 1.08993 * 109.47372 * 59.99485 * 10 9 8 38 38 H 1.08993 * 109.47057 * 299.99535 * 11 10 9 39 39 H 1.09001 * 109.47095 * 59.99863 * 11 10 9 40 40 H 0.96998 * 120.00761 * 0.02562 * 12 11 10 41 41 H 1.09001 * 109.47588 * 300.00385 * 15 13 12 42 42 H 1.09006 * 109.46874 * 59.99725 * 15 13 12 43 43 H 0.97012 * 119.99813 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0023 5 6 4.9211 1.3001 -0.0056 6 6 5.7662 0.8575 1.1609 7 8 5.3536 0.0068 1.9206 8 7 6.9807 1.4071 1.3602 9 6 7.7998 0.9811 2.4976 10 6 9.1199 1.7546 2.4935 11 6 9.9750 1.3102 3.6819 12 7 11.2393 2.0504 3.6775 13 6 12.1564 1.8232 4.6386 14 8 11.9354 1.0056 5.5068 15 6 13.4572 2.5841 4.6339 16 16 14.4688 2.0586 6.0397 17 6 15.8852 3.0778 5.7955 18 1 15.9209 3.7617 4.9603 19 6 16.9547 3.0026 6.6771 20 7 16.9109 2.1695 7.6952 21 14 18.4560 4.0837 6.4186 22 1 18.0518 5.5118 6.4659 23 1 19.4501 3.8143 7.4883 24 1 19.0599 3.7839 5.0954 25 7 3.4764 -0.7563 0.0048 26 8 2.3095 -1.0736 0.0062 27 1 -0.3632 -1.0277 0.0055 28 1 -0.3633 0.5185 0.8873 29 1 -0.3633 0.5092 -0.8927 30 1 2.0345 2.1271 -0.0005 31 1 4.7162 2.3673 0.0784 32 1 5.4548 1.1046 -0.9357 33 1 7.3105 2.0877 0.7528 34 1 7.2646 1.1815 3.4259 35 1 8.0037 -0.0868 2.4190 36 1 9.6551 1.5547 1.5652 37 1 8.9156 2.8223 2.5724 38 1 9.4396 1.5104 4.6098 39 1 10.1793 0.2424 3.6033 40 1 11.4160 2.7046 2.9835 41 1 13.9926 2.3828 3.7060 42 1 13.2535 3.6522 4.7114 43 1 17.6586 2.1167 8.3111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491601977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:15 Heat of formation + Delta-G solvation = -57.986998 kcal Electronic energy + Delta-G solvation = -24697.576911 eV Core-core repulsion = 20677.760919 eV Total energy + Delta-G solvation = -4019.815993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.87798 -40.84865 -40.55404 -37.30829 -35.68544 -35.49752 -34.57996 -34.24292 -32.84421 -30.99822 -29.93056 -28.58212 -27.68723 -26.20192 -24.05950 -22.90964 -22.35141 -21.73185 -20.69457 -19.81157 -18.75683 -18.20330 -17.92642 -17.61559 -17.49335 -17.17697 -16.87354 -16.68319 -16.52791 -15.79202 -15.74383 -15.34843 -14.78280 -14.66713 -14.55581 -14.35795 -14.17931 -13.94071 -13.92934 -13.49583 -13.24588 -13.21843 -13.16474 -13.09187 -12.85570 -12.63078 -12.60566 -12.09520 -12.02471 -11.74423 -11.29295 -11.12234 -11.01107 -10.84859 -10.26951 -10.20231 -10.18227 -10.12285 -8.66809 -8.33917 -6.12560 0.59136 1.23000 1.27848 1.44718 1.47631 1.56778 1.57241 1.61037 2.05288 2.28050 2.30758 2.41993 3.00409 3.16597 3.32720 3.54040 3.77996 3.92473 3.95207 3.98383 4.12463 4.15388 4.26448 4.31184 4.34895 4.48167 4.52100 4.54340 4.57108 4.69298 4.75686 4.76337 4.92179 5.05718 5.08013 5.10179 5.29644 5.36343 5.41806 5.42618 6.20071 6.49540 6.52898 7.07256 7.22411 7.25649 7.38585 8.75154 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.056946 B = 0.001203 C = 0.001188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.572895 B =23271.000649 C =23558.681950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.039 4.039 3 C -0.235 4.235 4 C 0.012 3.988 5 C -0.056 4.056 6 C 0.507 3.493 7 O -0.584 6.584 8 N -0.711 5.711 9 C 0.124 3.876 10 C -0.119 4.119 11 C 0.120 3.880 12 N -0.709 5.709 13 C 0.531 3.469 14 O -0.569 6.569 15 C -0.128 4.128 16 S -0.157 6.157 17 C -0.547 4.547 18 H 0.085 0.915 19 C 0.014 3.986 20 N -0.913 5.913 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.261 1.261 25 N -0.390 5.390 26 O 0.076 5.924 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.205 0.795 31 H 0.160 0.840 32 H 0.138 0.862 33 H 0.423 0.577 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.420 0.580 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.267 6.338 -24.771 41.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.256 4.256 4 C -0.147 4.147 5 C -0.095 4.095 6 C 0.293 3.707 7 O -0.463 6.463 8 N -0.365 5.365 9 C -0.001 4.001 10 C -0.157 4.157 11 C -0.004 4.004 12 N -0.364 5.364 13 C 0.316 3.684 14 O -0.448 6.448 15 C -0.280 4.280 16 S 0.070 5.930 17 C -0.695 4.695 18 H 0.103 0.897 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.820 3.180 22 H -0.185 1.185 23 H -0.205 1.205 24 H -0.186 1.186 25 N -0.095 5.095 26 O 0.011 5.989 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.222 0.778 31 H 0.177 0.823 32 H 0.155 0.845 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.258 0.742 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -32.007 3.271 -22.659 39.352 hybrid contribution 1.230 2.114 -0.935 2.619 sum -30.777 5.385 -23.594 39.153 Atomic orbital electron populations 1.20565 0.81133 1.05596 1.05762 1.25376 0.98108 0.85598 1.01164 1.22793 0.89888 1.02510 1.10410 1.23439 0.98113 0.89873 1.03295 1.20179 0.88853 1.02321 0.98196 1.20993 0.82152 0.80986 0.86532 1.90773 1.72907 1.33760 1.48893 1.45718 1.16969 1.43375 1.30433 1.21087 0.90992 0.98751 0.89275 1.21787 0.93527 1.02030 0.98387 1.21220 0.83692 0.96113 0.99410 1.45639 1.17193 1.43949 1.29625 1.20131 0.85060 0.82001 0.81168 1.90707 1.79233 1.36273 1.38539 1.23369 0.96268 1.03960 1.04358 1.85647 1.16721 1.56275 1.34386 1.23187 1.03401 1.26621 1.16265 0.89711 1.26135 1.01949 0.97160 0.93857 1.70187 1.33018 1.36839 1.14881 0.85003 0.76282 0.78339 0.78364 1.18528 1.20530 1.18586 1.73886 0.97522 1.18161 1.19961 1.84804 1.11461 1.34774 1.67900 0.89547 0.87716 0.86889 0.77803 0.82271 0.84467 0.73900 0.92423 0.92890 0.88165 0.87844 0.92486 0.92717 0.74248 0.86968 0.86897 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 71.24 0.74 0.52 16 2 C -0.04 -0.50 7.49 25.04 0.19 -0.31 16 3 C -0.23 -2.65 11.05 22.40 0.25 -2.41 16 4 C 0.01 0.20 6.10 43.58 0.27 0.47 16 5 C -0.06 -0.50 6.30 29.10 0.18 -0.32 16 6 C 0.51 8.68 7.82 87.65 0.69 9.37 16 7 O -0.58 -17.39 15.59 -3.04 -0.05 -17.44 16 8 N -0.71 -7.36 5.56 -463.05 -2.57 -9.93 16 9 C 0.12 1.79 5.67 86.38 0.49 2.28 16 10 C -0.12 -1.16 5.44 30.60 0.17 -0.99 16 11 C 0.12 2.40 5.67 86.38 0.49 2.89 16 12 N -0.71 -16.01 5.56 -463.06 -2.57 -18.58 16 13 C 0.53 19.07 7.85 87.66 0.69 19.76 16 14 O -0.57 -26.58 15.86 -3.04 -0.05 -26.63 16 15 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 16 S -0.16 -8.73 20.57 -56.49 -1.16 -9.89 16 17 C -0.55 -31.01 9.50 67.95 0.65 -30.36 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.78 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 21 Si 1.00 43.18 29.55 68.60 2.03 45.20 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 N -0.39 -9.59 11.46 -49.54 -0.57 -10.16 16 26 O 0.08 1.62 11.20 71.67 0.80 2.42 16 27 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.20 0.64 8.06 -2.91 -0.02 0.62 16 31 H 0.16 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.42 0.69 8.47 -92.71 -0.79 -0.09 16 34 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.05 1.00 8.14 -2.38 -0.02 0.99 16 36 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.42 5.91 8.47 -92.71 -0.79 5.12 16 41 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 42 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 43 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -96.95 391.86 1.32 -95.63 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -0.52 Total: 7.69 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.70 Total: -2.35 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -5.43 Total: -94.64 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: 0.71 Total: -41.64 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -96.95 1.32 -95.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491601977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.640 kcal (2) G-P(sol) polarization free energy of solvation -96.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds