Wall clock time and date at job start Sat Apr 11 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00233 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00429 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00538 * 3 2 1 7 7 C 1.38803 * 119.99752 * 180.28287 * 2 1 3 8 8 H 1.07999 * 120.00074 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99871 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47042 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99649 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00172 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00024 * 179.97438 * 13 11 10 15 15 H 1.09005 * 110.64137 * 34.30372 * 14 13 11 16 16 C 1.55158 * 110.72437 * 271.15947 * 14 13 11 17 17 C 1.54909 * 101.58238 * 206.13340 * 16 14 13 18 18 N 1.47429 * 104.83051 * 37.01217 * 17 16 14 19 19 C 1.34771 * 125.64683 * 155.90811 * 18 17 16 20 20 O 1.21280 * 120.00128 * 179.97438 * 19 18 17 21 21 C 1.50701 * 120.00407 * 359.97128 * 19 18 17 22 22 H 1.09003 * 110.43355 * 302.54678 * 21 19 18 23 23 C 1.54619 * 110.49148 * 180.02562 * 21 19 18 24 24 C 1.54479 * 101.76628 * 216.52776 * 23 21 19 25 25 N 1.46762 * 105.47638 * 25.41002 * 24 23 21 26 26 C 1.34420 * 111.29789 * 342.98824 * 25 24 23 27 27 O 1.21279 * 124.94132 * 180.43751 * 26 25 24 28 28 C 1.47322 * 108.73504 * 335.71412 * 18 17 16 29 29 H 0.97005 * 119.99723 * 359.71791 * 1 2 3 30 30 H 1.09005 * 109.47046 * 299.99880 * 10 9 7 31 31 H 1.09000 * 109.47385 * 60.00042 * 10 9 7 32 32 H 0.96999 * 119.99513 * 0.02562 * 13 11 10 33 33 H 1.08998 * 111.00353 * 324.21155 * 16 14 13 34 34 H 1.09004 * 111.00174 * 88.02409 * 16 14 13 35 35 H 1.08995 * 110.36312 * 155.84884 * 17 16 14 36 36 H 1.08990 * 110.36903 * 278.17357 * 17 16 14 37 37 H 1.09007 * 110.96610 * 334.64069 * 23 21 19 38 38 H 1.08998 * 110.97267 * 98.36613 * 23 21 19 39 39 H 1.09002 * 110.24959 * 144.41724 * 24 23 21 40 40 H 1.09002 * 110.24202 * 266.32708 * 24 23 21 41 41 H 0.96993 * 124.35472 * 162.98608 * 25 24 23 42 42 H 1.08999 * 110.06051 * 241.87184 * 28 18 17 43 43 H 1.08997 * 109.84632 * 120.61396 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5479 1.4401 -0.7001 6 1 1.4479 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0059 8 1 1.4703 -2.1374 -0.0101 9 16 3.7723 -1.2021 -0.0066 10 6 4.0865 -2.9846 -0.0143 11 6 5.5730 -3.2327 -0.0166 12 8 6.3439 -2.2965 -0.0129 13 7 6.0456 -4.4949 -0.0218 14 6 7.4906 -4.7360 -0.0245 15 1 8.0090 -3.9701 0.5524 16 6 8.0350 -4.7921 -1.4764 17 6 9.2901 -5.6836 -1.3036 18 7 8.9020 -6.6911 -0.2996 19 6 9.4569 -7.9108 -0.1558 20 8 9.0566 -8.6610 0.7090 21 6 10.5749 -8.3426 -1.0695 22 1 10.2553 -8.2952 -2.1105 23 6 11.0442 -9.7720 -0.7125 24 6 12.5665 -9.6737 -0.9558 25 7 12.8998 -8.2547 -0.7839 26 6 11.8006 -7.4837 -0.8490 27 8 11.7927 -6.2753 -0.7464 28 6 7.8104 -6.1426 0.5237 29 1 -0.4850 0.8401 0.0041 30 1 3.6439 -3.4355 0.8740 31 1 3.6432 -3.4279 -0.9060 32 1 5.4289 -5.2436 -0.0244 33 1 7.3133 -5.2591 -2.1465 34 1 8.3072 -3.7977 -1.8303 35 1 9.5450 -6.1666 -2.2468 36 1 10.1296 -5.0906 -0.9410 37 1 10.8301 -10.0036 0.3310 38 1 10.5895 -10.5087 -1.3747 39 1 13.1050 -10.2787 -0.2263 40 1 12.8086 -9.9994 -1.9674 41 1 13.7977 -7.9167 -0.6417 42 1 8.1264 -6.0718 1.5645 43 1 6.9303 -6.7806 0.4439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491868105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:19 Heat of formation + Delta-G solvation = -126.145563 kcal Electronic energy + Delta-G solvation = -26780.277897 eV Core-core repulsion = 22757.506327 eV Total energy + Delta-G solvation = -4022.771570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.11584 -41.00597 -40.03959 -38.60830 -37.32670 -35.37540 -34.66360 -32.88295 -32.03291 -30.77402 -29.61542 -28.48079 -27.82799 -24.86004 -23.17332 -22.56399 -22.24693 -21.75046 -19.97662 -19.89053 -18.64253 -18.49741 -18.14094 -17.64461 -17.38379 -17.06482 -16.82085 -16.44392 -16.17237 -15.68214 -15.43793 -15.06761 -14.93904 -14.85814 -14.76499 -14.61215 -14.18108 -14.04274 -13.70944 -13.64044 -13.36707 -13.33723 -13.04531 -12.94419 -12.78307 -12.75362 -12.54551 -12.12943 -11.96013 -11.86135 -11.22639 -11.16607 -11.06775 -10.91439 -10.52857 -10.22608 -10.10188 -9.75435 -8.98708 -8.50999 -6.21586 0.97558 1.16422 1.31972 1.45010 1.49471 1.53427 1.54659 1.79174 2.23973 2.27883 2.41523 2.72023 2.87290 3.13246 3.23933 3.37736 3.51323 3.74991 3.82339 3.98160 4.01273 4.09483 4.14654 4.24873 4.28196 4.47122 4.48216 4.51721 4.71084 4.75406 4.79882 4.94843 4.99993 5.07464 5.12440 5.20013 5.39017 5.71280 5.74796 5.96665 6.12257 6.29888 6.41436 6.90582 6.94234 7.14823 7.14934 8.61268 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.037862 B = 0.001884 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.343636 B =14859.565043 C =15344.796696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.236 1.236 6 H -0.260 1.260 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.174 6.174 10 C -0.112 4.112 11 C 0.541 3.459 12 O -0.557 6.557 13 N -0.703 5.703 14 C 0.139 3.861 15 H 0.088 0.912 16 C -0.141 4.141 17 C 0.112 3.888 18 N -0.607 5.607 19 C 0.540 3.460 20 O -0.569 6.569 21 C -0.144 4.144 22 H 0.162 0.838 23 C -0.116 4.116 24 C 0.100 3.900 25 N -0.719 5.719 26 C 0.520 3.480 27 O -0.556 6.556 28 C 0.109 3.891 29 H 0.277 0.723 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.418 0.582 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.421 0.579 42 H 0.070 0.930 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.703 -25.235 -6.022 37.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.160 1.160 6 H -0.184 1.184 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.052 5.948 10 C -0.262 4.262 11 C 0.327 3.673 12 O -0.434 6.434 13 N -0.357 5.357 14 C 0.033 3.967 15 H 0.106 0.894 16 C -0.180 4.180 17 C -0.011 4.011 18 N -0.340 5.340 19 C 0.328 3.672 20 O -0.448 6.448 21 C -0.168 4.168 22 H 0.179 0.821 23 C -0.154 4.154 24 C -0.023 4.023 25 N -0.374 5.374 26 C 0.304 3.696 27 O -0.435 6.435 28 C -0.015 4.015 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.256 0.744 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.261 0.739 42 H 0.089 0.911 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 28.526 -23.510 -5.516 37.375 hybrid contribution -1.227 -0.247 0.330 1.295 sum 27.299 -23.757 -5.186 36.559 Atomic orbital electron populations 1.70021 1.07294 1.28987 1.49165 1.25568 0.95278 1.02260 0.92935 0.85867 0.80717 0.79624 0.80161 1.18818 1.15965 1.18388 1.22470 0.90303 0.96692 1.58187 0.91897 1.84718 1.06360 1.06116 1.97593 1.23270 0.95632 0.99676 1.07661 1.19927 0.89429 0.83089 0.74870 1.90704 1.59221 1.43680 1.49818 1.45634 1.07313 1.07235 1.75565 1.21830 0.81101 0.96139 0.97669 0.89397 1.23238 0.97490 1.01136 0.96147 1.22550 0.96937 0.89483 0.92098 1.48443 1.35906 1.14853 1.34769 1.20008 0.83072 0.79719 0.84356 1.90709 1.64350 1.53294 1.36456 1.22196 0.92285 0.98916 1.03360 0.82087 1.22698 0.95022 0.92865 1.04815 1.22401 0.94903 0.80319 1.04664 1.46221 1.09626 1.09357 1.72229 1.20594 0.86554 0.86903 0.75507 1.90757 1.86472 1.14279 1.51945 1.22048 0.91226 0.93152 0.95038 0.91401 0.86783 0.86529 0.74403 0.88904 0.89798 0.88564 0.89922 0.90200 0.85895 0.87897 0.87682 0.73867 0.91136 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.80 13.97 21.65 0.30 -55.49 16 2 C 0.04 2.64 5.50 84.86 0.47 3.10 16 3 Si 0.91 45.01 27.74 68.60 1.90 46.91 16 4 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.24 -11.55 6.73 99.48 0.67 -10.88 16 6 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.53 -30.64 10.04 67.96 0.68 -29.96 16 8 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 9 S -0.17 -8.71 18.54 -56.49 -1.05 -9.76 16 10 C -0.11 -4.07 6.16 71.24 0.44 -3.63 16 11 C 0.54 17.84 7.85 87.66 0.69 18.53 16 12 O -0.56 -23.02 15.55 -3.04 -0.05 -23.07 16 13 N -0.70 -15.89 5.19 -436.92 -2.27 -18.16 16 14 C 0.14 2.97 3.27 46.18 0.15 3.12 16 15 H 0.09 2.29 7.62 -2.38 -0.02 2.28 16 16 C -0.14 -2.60 6.77 31.99 0.22 -2.38 16 17 C 0.11 1.90 5.22 86.85 0.45 2.35 16 18 N -0.61 -11.58 3.30 -811.06 -2.67 -14.25 16 19 C 0.54 10.51 7.18 87.66 0.63 11.13 16 20 O -0.57 -14.63 15.82 -3.03 -0.05 -14.67 16 21 C -0.14 -1.59 2.61 -11.55 -0.03 -1.62 16 22 H 0.16 0.87 7.77 -2.39 -0.02 0.86 16 23 C -0.12 -0.68 6.48 31.65 0.21 -0.47 16 24 C 0.10 0.13 7.78 86.83 0.68 0.81 16 25 N -0.72 -5.33 6.24 -459.80 -2.87 -8.19 16 26 C 0.52 7.55 7.76 87.90 0.68 8.23 16 27 O -0.56 -12.36 14.26 -3.03 -0.04 -12.40 16 28 C 0.11 2.11 6.64 86.67 0.58 2.68 16 29 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 30 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 31 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 32 H 0.42 6.81 8.34 -92.71 -0.77 6.04 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.10 1.20 7.42 -2.39 -0.02 1.18 16 36 H 0.08 1.76 6.19 -2.39 -0.01 1.75 16 37 H 0.08 0.89 7.00 -2.38 -0.02 0.87 16 38 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.11 -0.35 8.14 -2.39 -0.02 -0.36 16 41 H 0.42 2.13 8.96 -92.71 -0.83 1.30 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.52 7.70 -2.39 -0.02 1.50 16 Total: -1.00 -83.55 367.27 -1.53 -85.08 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -0.57 Total: 12.12 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.83 Total: 11.89 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -7.51 Total: -96.10 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -0.14 Total: -50.15 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.05 Total: -9.76 kcal Total: -83.55 -1.53 -85.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491868105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.061 kcal (2) G-P(sol) polarization free energy of solvation -83.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds