Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99956 * 2 1 4 4 H 1.48495 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46842 * 300.00093 * 3 2 1 6 6 H 1.48494 * 109.46781 * 59.99747 * 3 2 1 7 7 C 1.38800 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00312 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00051 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46983 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00183 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99755 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99531 * 180.02562 * 13 11 10 15 15 H 1.08996 * 112.85385 * 23.80181 * 14 13 11 16 16 C 1.53781 * 113.61225 * 155.00207 * 14 13 11 17 17 C 1.53786 * 87.17350 * 139.93836 * 16 14 13 18 18 H 1.09000 * 113.61138 * 220.06261 * 17 16 14 19 19 N 1.46496 * 113.61518 * 89.15486 * 17 16 14 20 20 C 1.34779 * 119.99390 * 154.99856 * 19 17 16 21 21 O 1.21277 * 120.00682 * 0.02562 * 20 19 17 22 22 C 1.50703 * 119.99369 * 180.02562 * 20 19 17 23 23 H 1.09004 * 110.43416 * 298.91365 * 22 20 19 24 24 C 1.54632 * 110.48492 * 176.23352 * 22 20 19 25 25 C 1.54488 * 101.75945 * 266.11709 * 24 22 20 26 26 N 1.46764 * 105.47447 * 334.58346 * 25 24 22 27 27 C 1.34416 * 111.29885 * 17.01590 * 26 25 24 28 28 O 1.21284 * 124.93897 * 179.62487 * 27 26 25 29 29 C 1.53782 * 113.61191 * 252.49880 * 14 13 11 30 30 H 0.97000 * 120.00400 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47645 * 59.99581 * 10 9 7 32 32 H 1.09007 * 109.46986 * 299.99528 * 10 9 7 33 33 H 0.96997 * 119.99692 * 0.02562 * 13 11 10 34 34 H 1.09002 * 113.61445 * 254.52836 * 16 14 13 35 35 H 1.09002 * 113.61408 * 25.34566 * 16 14 13 36 36 H 0.97001 * 120.00117 * 335.00621 * 19 17 16 37 37 H 1.09000 * 110.97031 * 24.22895 * 24 22 20 38 38 H 1.08998 * 110.96969 * 147.99837 * 24 22 20 39 39 H 1.09000 * 110.24003 * 215.58200 * 25 24 22 40 40 H 1.09000 * 110.31719 * 93.62483 * 25 24 22 41 41 H 0.96994 * 124.34326 * 197.00032 * 26 25 24 42 42 H 1.08997 * 113.61668 * 334.56642 * 29 14 13 43 43 H 1.08994 * 113.61387 * 105.47377 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9875 -5.3027 0.0017 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0022 14 6 2.3306 -7.7151 0.0012 15 1 1.3219 -7.7891 -0.4051 16 6 3.3111 -8.7396 -0.5936 17 6 2.8755 -9.6950 0.5300 18 1 3.6970 -10.2702 0.9569 19 7 1.7199 -10.5245 0.1798 20 6 1.5289 -11.7082 0.7954 21 8 2.3134 -12.0864 1.6394 22 6 0.3405 -12.5619 0.4347 23 1 -0.5877 -12.0312 0.6471 24 6 0.3867 -13.9048 1.1998 25 6 1.0950 -14.8240 0.1799 26 7 0.8194 -14.2348 -1.1357 27 6 0.3994 -12.9629 -1.0227 28 8 0.1092 -12.2420 -1.9539 29 6 2.5100 -8.4410 1.3450 30 1 -0.4851 0.8400 -0.0004 31 1 3.1239 -3.7309 0.8924 32 1 3.1252 -3.7317 -0.8876 33 1 3.8011 -6.1834 0.0032 34 1 3.0332 -9.0822 -1.5903 35 1 4.3553 -8.4343 -0.5268 36 1 1.0923 -10.2219 -0.4951 37 1 0.9724 -13.8128 2.1144 38 1 -0.6189 -14.2649 1.4169 39 1 0.6865 -15.8331 0.2344 40 1 2.1685 -14.8416 0.3680 41 1 0.9268 -14.7030 -1.9783 42 1 3.3354 -8.0548 1.9431 43 1 1.5855 -8.5426 1.9133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493975673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -87.380954 kcal Electronic energy + Delta-G solvation = -26288.917852 eV Core-core repulsion = 22267.827242 eV Total energy + Delta-G solvation = -4021.090610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51005 -40.26731 -39.06907 -37.96612 -36.75676 -34.23636 -32.71469 -32.42575 -31.82175 -29.19816 -28.37338 -26.00838 -25.53019 -24.66724 -22.96775 -22.03875 -20.71835 -20.28789 -19.85353 -18.24832 -17.95652 -17.80557 -16.78180 -16.34771 -16.10356 -16.01063 -15.64927 -14.98532 -14.90169 -14.80448 -14.42379 -14.19122 -14.14034 -13.95591 -13.75779 -13.28587 -13.20607 -12.89329 -12.78533 -12.70977 -12.26476 -12.04831 -11.92370 -11.88060 -11.08212 -11.04997 -11.02069 -10.86213 -10.71037 -10.60526 -10.26654 -9.80145 -9.68328 -9.46947 -9.36801 -9.07602 -8.86139 -8.22984 -6.49758 -6.21661 -3.92112 1.79501 2.14616 2.66035 2.87172 3.04064 3.05848 3.21730 3.28606 3.33419 3.69041 3.72925 3.82954 4.14452 4.16889 4.20452 4.30638 4.41475 4.55789 4.68838 4.80198 4.89597 5.00289 5.11164 5.13640 5.29047 5.33585 5.40329 5.45088 5.47855 5.59633 5.65835 5.80142 5.87989 5.90166 6.13783 6.14804 6.21356 6.38886 6.64191 7.04655 7.60002 7.62370 7.70231 7.73112 8.35546 8.60441 9.23817 10.85823 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.001734 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.379572 B =16147.937290 C =16449.313223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.728 5.728 14 C 0.126 3.874 15 H 0.114 0.886 16 C -0.154 4.154 17 C 0.121 3.879 18 H 0.109 0.891 19 N -0.704 5.704 20 C 0.537 3.463 21 O -0.530 6.530 22 C -0.153 4.153 23 H 0.137 0.863 24 C -0.120 4.120 25 C 0.098 3.902 26 N -0.727 5.727 27 C 0.529 3.471 28 O -0.519 6.519 29 C -0.163 4.163 30 H 0.268 0.732 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.399 0.601 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.410 0.590 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.414 0.586 42 H 0.096 0.904 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.204 -31.650 1.074 32.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.381 5.381 14 C 0.020 3.980 15 H 0.132 0.868 16 C -0.192 4.192 17 C 0.015 3.985 18 H 0.127 0.873 19 N -0.355 5.355 20 C 0.321 3.679 21 O -0.406 6.406 22 C -0.178 4.178 23 H 0.155 0.845 24 C -0.158 4.158 25 C -0.026 4.026 26 N -0.383 5.383 27 C 0.313 3.687 28 O -0.394 6.394 29 C -0.203 4.203 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.246 0.754 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.254 0.746 42 H 0.114 0.886 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.433 -31.684 1.284 32.018 hybrid contribution 2.116 1.306 -0.657 2.572 sum 6.549 -30.378 0.627 31.082 Atomic orbital electron populations 1.70026 1.05951 1.27349 1.46948 1.24998 0.95029 0.99047 0.94547 0.86111 0.79575 0.81879 0.77898 1.19627 1.20564 1.20570 1.22913 0.94944 0.91648 1.58829 0.90871 1.85404 1.04943 0.96357 1.96710 1.23541 1.06588 0.95431 1.04933 1.20366 0.86610 0.86386 0.74747 1.90696 1.15396 1.85584 1.47401 1.45967 1.09776 1.05027 1.77353 1.22477 0.99084 0.80380 0.96026 0.86779 1.23752 1.00884 0.95561 0.99045 1.21753 0.88986 0.90820 0.96892 0.87280 1.45711 1.28092 1.19520 1.42186 1.19702 0.85698 0.81227 0.81264 1.90707 1.45431 1.72070 1.32366 1.22194 1.00946 0.99036 0.95634 0.84501 1.22628 1.02862 0.90925 0.99363 1.22171 1.01230 0.97717 0.81494 1.46163 1.67889 1.14211 1.10024 1.20311 0.76178 0.82173 0.90018 1.90825 1.49041 1.55515 1.43981 1.23991 1.03326 0.95126 0.97827 0.92233 0.89203 0.89204 0.76664 0.90026 0.88056 0.75363 0.87027 0.88981 0.89667 0.90388 0.74642 0.88578 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 9.81 7.85 -10.98 -0.09 9.72 16 12 O -0.52 -11.64 15.46 5.56 0.09 -11.55 16 13 N -0.73 -9.34 5.35 -53.02 -0.28 -9.63 16 14 C 0.13 1.41 4.12 -67.12 -0.28 1.14 16 15 H 0.11 1.51 7.46 -51.93 -0.39 1.12 16 16 C -0.15 -1.24 7.57 -25.92 -0.20 -1.44 16 17 C 0.12 1.06 4.33 -67.02 -0.29 0.77 16 18 H 0.11 0.99 7.47 -51.93 -0.39 0.60 16 19 N -0.70 -6.30 5.20 -52.92 -0.28 -6.58 16 20 C 0.54 4.94 7.19 -10.98 -0.08 4.86 16 21 O -0.53 -6.08 15.06 5.56 0.08 -6.00 16 22 C -0.15 -1.04 3.33 -91.78 -0.31 -1.34 16 23 H 0.14 0.76 8.14 -51.93 -0.42 0.33 16 24 C -0.12 -0.52 6.53 -25.09 -0.16 -0.68 16 25 C 0.10 0.35 7.78 -3.12 -0.02 0.33 16 26 N -0.73 -3.95 6.24 -59.20 -0.37 -4.32 16 27 C 0.53 4.41 7.65 -10.86 -0.08 4.33 16 28 O -0.52 -6.23 17.85 5.55 0.10 -6.13 16 29 C -0.16 -1.62 7.68 -25.82 -0.20 -1.82 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 33 H 0.40 3.89 8.73 -40.82 -0.36 3.53 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.41 3.61 8.49 -40.82 -0.35 3.27 16 37 H 0.11 0.58 6.91 -51.93 -0.36 0.23 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.41 1.66 8.96 -40.82 -0.37 1.29 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -38.18 380.55 -8.68 -46.86 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.97 Total: 4.54 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.28 Total: -0.01 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.19 Total: -46.03 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.27 Total: -23.68 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.18 -8.68 -46.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493975673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.519 kcal (2) G-P(sol) polarization free energy of solvation -38.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds