Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30013 * 127.33065 * 2 1 4 4 O 1.20661 * 112.29570 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15824 * 0.02562 * 4 3 2 6 6 C 1.37360 * 106.34237 * 359.73602 * 5 4 3 7 7 C 1.47395 * 128.56547 * 180.25775 * 6 5 4 8 8 O 1.21609 * 120.00005 * 180.13624 * 7 6 5 9 9 N 1.34775 * 119.99925 * 0.13925 * 7 6 5 10 10 C 1.46507 * 119.99889 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47069 * 34.99731 * 10 9 7 12 12 C 1.53002 * 109.47057 * 275.00182 * 10 9 7 13 13 C 1.53002 * 109.47010 * 155.00172 * 10 9 7 14 14 C 1.53000 * 109.46861 * 294.99874 * 13 10 9 15 15 N 1.46495 * 109.46734 * 180.02562 * 14 13 10 16 16 C 1.34783 * 120.00320 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99193 * 0.02562 * 16 15 14 18 18 C 1.50689 * 120.00309 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.47061 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00180 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00072 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00381 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99537 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00226 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47150 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47018 * 120.00075 * 24 22 20 27 27 H 1.48508 * 109.46929 * 239.99865 * 24 22 20 28 28 H 1.09001 * 109.46953 * 90.02549 * 1 2 3 29 29 H 1.09000 * 109.47318 * 210.02147 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.02777 * 1 2 3 31 31 H 1.08001 * 126.82751 * 180.02562 * 5 4 3 32 32 H 0.96998 * 120.00588 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47242 * 299.99837 * 12 10 9 34 34 H 1.09003 * 109.47120 * 59.99638 * 12 10 9 35 35 H 1.08993 * 109.46960 * 179.97438 * 12 10 9 36 36 H 1.08993 * 109.46842 * 54.99880 * 13 10 9 37 37 H 1.08996 * 109.46887 * 174.99985 * 13 10 9 38 38 H 1.09000 * 109.47352 * 300.00363 * 14 13 10 39 39 H 1.08995 * 109.46756 * 60.00377 * 14 13 10 40 40 H 0.97000 * 120.00337 * 0.02562 * 15 14 13 41 41 H 1.09000 * 109.47476 * 300.00231 * 18 16 15 42 42 H 1.09005 * 109.47346 * 60.00597 * 18 16 15 43 43 H 0.97001 * 119.99922 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0004 6 6 2.3992 -1.1696 0.0058 7 6 2.0401 -2.5991 0.0131 8 8 0.8706 -2.9323 0.0147 9 7 3.0080 -3.5370 0.0181 10 6 2.6511 -4.9579 0.0260 11 1 1.7460 -5.1085 -0.5624 12 6 2.4051 -5.4140 1.4656 13 6 3.7948 -5.7744 -0.5793 14 6 3.9585 -5.4063 -2.0554 15 7 5.0531 -6.1885 -2.6351 16 6 5.3812 -6.0299 -3.9327 17 8 4.7704 -5.2392 -4.6202 18 6 6.5076 -6.8340 -4.5288 19 16 6.7022 -6.3977 -6.2747 20 6 8.0443 -7.4545 -6.7064 21 1 8.4794 -8.1060 -5.9630 22 6 8.5432 -7.4491 -8.0017 23 7 8.0138 -6.6539 -8.9074 24 14 9.9665 -8.5690 -8.4592 25 1 10.3790 -9.3563 -7.2697 26 1 9.5415 -9.4925 -9.5416 27 1 11.1109 -7.7479 -8.9300 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.5967 -1.1195 0.0011 32 1 3.9409 -3.2713 0.0172 33 1 3.3102 -5.2635 2.0541 34 1 1.5904 -4.8323 1.8968 35 1 2.1392 -6.4710 1.4714 36 1 4.7195 -5.5555 -0.0456 37 1 3.5680 -6.8370 -0.4928 38 1 3.0336 -5.6251 -2.5892 39 1 4.1852 -4.3437 -2.1418 40 1 5.5418 -6.8206 -2.0851 41 1 7.4324 -6.6156 -3.9948 42 1 6.2806 -7.8967 -4.4428 43 1 8.3621 -6.6503 -9.8127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495453041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = -55.287340 kcal Electronic energy + Delta-G solvation = -26001.189301 eV Core-core repulsion = 21981.490374 eV Total energy + Delta-G solvation = -4019.698927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.98445 -40.96025 -40.47305 -37.71570 -35.63772 -35.48566 -34.57461 -33.73448 -32.26457 -31.21338 -29.70949 -29.17923 -27.64347 -26.01942 -24.29098 -22.42476 -22.36992 -21.73183 -21.42346 -19.85087 -19.26651 -18.80314 -17.81512 -17.67186 -17.32571 -17.16320 -16.87075 -16.62879 -16.09143 -15.80872 -15.70522 -15.09585 -14.84308 -14.71490 -14.46743 -14.41791 -14.28391 -14.12830 -13.61376 -13.53212 -13.45366 -13.14757 -12.97325 -12.91169 -12.62523 -12.41806 -12.38385 -12.34724 -11.91106 -11.69112 -11.21808 -11.15199 -10.99903 -10.94219 -10.83036 -10.25038 -10.20974 -10.05334 -8.65686 -8.34001 -6.11830 0.05517 0.70371 1.28826 1.42307 1.49062 1.59492 1.64034 1.85251 2.12071 2.26678 2.27518 2.31655 2.98987 3.00435 3.28689 3.33448 3.73157 3.79295 3.82599 3.97588 4.07258 4.12291 4.33655 4.39374 4.45892 4.49587 4.54338 4.56847 4.59654 4.65846 4.73837 4.83475 4.92618 5.04213 5.12018 5.16500 5.35196 5.43273 5.46046 5.48162 6.21021 6.43282 6.55455 7.07660 7.10999 7.18146 7.29147 8.75374 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.001898 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.629842 B =14750.683845 C =15820.935544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.050 3.950 3 N -0.384 5.384 4 O 0.094 5.906 5 C 0.030 3.970 6 C -0.284 4.284 7 C 0.598 3.402 8 O -0.566 6.566 9 N -0.705 5.705 10 C 0.147 3.853 11 H 0.070 0.930 12 C -0.156 4.156 13 C -0.122 4.122 14 C 0.118 3.882 15 N -0.709 5.709 16 C 0.531 3.469 17 O -0.570 6.570 18 C -0.129 4.129 19 S -0.158 6.158 20 C -0.543 4.543 21 H 0.085 0.915 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.275 1.275 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.276 0.724 32 H 0.415 0.585 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.044 0.956 39 H 0.059 0.941 40 H 0.420 0.580 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.044 4.612 27.913 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 N -0.093 5.093 4 O 0.036 5.964 5 C -0.052 4.052 6 C -0.292 4.292 7 C 0.385 3.615 8 O -0.446 6.446 9 N -0.358 5.358 10 C 0.043 3.957 11 H 0.089 0.911 12 C -0.214 4.214 13 C -0.160 4.160 14 C -0.006 4.006 15 N -0.364 5.364 16 C 0.317 3.683 17 O -0.448 6.448 18 C -0.280 4.280 19 S 0.069 5.931 20 C -0.691 4.691 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.178 1.178 26 H -0.201 1.201 27 H -0.200 1.200 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.291 0.709 32 H 0.252 0.748 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.257 0.743 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.062 7.043 26.641 29.008 hybrid contribution 1.650 -2.101 0.068 2.672 sum -7.413 4.942 26.709 28.155 Atomic orbital electron populations 1.20278 0.84420 1.04507 1.04150 1.25260 0.99841 0.86936 0.99144 1.73710 0.89901 1.24241 1.21456 1.84555 1.20897 1.24244 1.66688 1.27308 1.01112 0.83018 0.93748 1.22369 0.93879 0.95156 1.17778 1.16931 0.85349 0.83633 0.75591 1.90781 1.19859 1.82460 1.51526 1.45831 1.09572 1.05999 1.74375 1.20944 0.98287 0.78639 0.97854 0.91128 1.22104 1.02423 1.02265 0.94588 1.22053 0.99860 1.02132 0.91927 1.21401 0.88987 0.95662 0.94544 1.45684 1.36685 1.44562 1.09448 1.20096 0.83615 0.81993 0.82605 1.90709 1.54289 1.38140 1.61662 1.23371 1.00556 1.03625 1.00441 1.85643 1.45834 1.56891 1.04722 1.23238 1.19391 1.26939 0.99510 0.89720 1.26150 1.00462 0.97543 0.95218 1.70197 1.42398 1.38310 1.03988 0.84896 0.76817 0.77569 0.78611 1.17807 1.20136 1.20021 0.89617 0.89318 0.89300 0.70851 0.74771 0.90400 0.93980 0.89975 0.87296 0.87354 0.93764 0.92213 0.74274 0.86838 0.87188 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 10.15 71.24 0.72 -0.62 16 2 C 0.05 1.03 7.58 45.16 0.34 1.37 16 3 N -0.38 -8.13 12.01 -44.79 -0.54 -8.67 16 4 O 0.09 1.52 11.06 76.98 0.85 2.37 16 5 C 0.03 0.30 11.85 67.61 0.80 1.10 16 6 C -0.28 -4.76 6.47 -18.75 -0.12 -4.89 16 7 C 0.60 10.93 7.78 86.65 0.67 11.61 16 8 O -0.57 -14.68 15.35 -4.06 -0.06 -14.74 16 9 N -0.71 -7.57 4.53 -445.81 -2.02 -9.59 16 10 C 0.15 1.56 2.58 44.99 0.12 1.68 16 11 H 0.07 1.16 7.58 -2.39 -0.02 1.15 16 12 C -0.16 -1.30 9.48 71.98 0.68 -0.62 16 13 C -0.12 -0.85 4.87 30.60 0.15 -0.70 16 14 C 0.12 2.03 5.56 86.38 0.48 2.51 16 15 N -0.71 -14.32 5.56 -463.08 -2.57 -16.89 16 16 C 0.53 18.03 7.85 87.65 0.69 18.72 16 17 O -0.57 -25.51 15.86 -3.04 -0.05 -25.55 16 18 C -0.13 -4.75 6.16 71.23 0.44 -4.31 16 19 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 20 C -0.54 -30.29 9.50 67.95 0.65 -29.65 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 22 C 0.01 0.61 5.49 84.86 0.47 1.07 16 23 N -0.91 -55.59 13.22 21.65 0.29 -55.31 16 24 Si 1.00 42.79 29.55 68.60 2.03 44.82 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.67 7.10 -2.39 -0.02 1.65 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.28 -0.59 7.68 -2.91 -0.02 -0.61 16 32 H 0.41 1.65 7.79 -92.71 -0.72 0.93 16 33 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.13 7.75 -2.39 -0.02 1.11 16 40 H 0.42 5.05 8.47 -92.71 -0.79 4.26 16 41 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 42 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 43 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -89.07 388.25 2.40 -86.67 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.45 Total: 9.35 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 6.09 Total: -2.72 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -4.84 Total: -90.45 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: 0.74 Total: -37.92 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -89.07 2.40 -86.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495453041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.385 kcal (2) G-P(sol) polarization free energy of solvation -89.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds