Wall clock time and date at job start Sat Apr 11 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00387 * 2 1 4 4 H 1.48493 * 109.47228 * 239.99909 * 3 2 1 5 5 H 1.48503 * 109.46870 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47432 * 119.99611 * 3 2 1 7 7 C 1.38812 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00094 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99893 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99985 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47300 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46888 * 305.00454 * 11 10 9 13 13 O 1.42895 * 109.47047 * 64.99789 * 11 10 9 14 14 C 1.52998 * 109.47294 * 185.00431 * 11 10 9 15 15 N 1.46496 * 109.46846 * 179.97438 * 14 11 10 16 16 C 1.34777 * 119.99613 * 179.97438 * 15 14 11 17 17 O 1.21691 * 120.00306 * 0.02562 * 16 15 14 18 18 C 1.46686 * 119.99903 * 180.02562 * 16 15 14 19 19 C 1.35659 * 126.12948 * 0.03033 * 18 16 15 20 20 N 1.30944 * 114.19176 * 179.97438 * 19 18 16 21 21 C 1.29432 * 117.36137 * 359.97438 * 20 19 18 22 22 C 1.50705 * 124.80319 * 180.02562 * 21 20 19 23 23 H 1.08993 * 110.33055 * 197.22697 * 22 21 20 24 24 C 1.54479 * 110.36815 * 74.97493 * 22 21 20 25 25 C 1.54513 * 104.06197 * 217.18896 * 24 22 21 26 26 C 1.54479 * 104.06039 * 0.02562 * 25 24 22 27 27 O 1.44422 * 104.80734 * 23.97973 * 26 25 24 28 28 S 1.70946 * 110.39342 * 359.72625 * 21 20 19 29 29 H 0.97005 * 120.00109 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99956 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47207 * 60.00556 * 10 9 7 32 32 H 1.09000 * 109.47237 * 300.00364 * 10 9 7 33 33 H 0.96708 * 113.99581 * 60.00106 * 13 11 10 34 34 H 1.09002 * 109.47106 * 59.99809 * 14 11 10 35 35 H 1.08999 * 109.46731 * 299.99697 * 14 11 10 36 36 H 0.96996 * 120.00516 * 0.02562 * 15 14 11 37 37 H 1.07998 * 122.90764 * 0.02562 * 19 18 16 38 38 H 1.08993 * 110.51729 * 335.83413 * 24 22 21 39 39 H 1.08999 * 110.50842 * 98.41534 * 24 22 21 40 40 H 1.08996 * 110.51227 * 118.64670 * 25 24 22 41 41 H 1.08997 * 110.51565 * 241.22449 * 25 24 22 42 42 H 1.09004 * 110.37016 * 142.80971 * 26 25 24 43 43 H 1.08995 * 110.37718 * 265.03164 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8198 -0.0001 12 1 0.3791 -4.7130 0.8415 13 8 0.3218 -4.8115 -1.2214 14 6 1.8244 -6.1412 0.1257 15 7 0.8723 -7.2546 0.1257 16 6 1.3181 -8.5225 0.2270 17 8 2.5115 -8.7423 0.3189 18 6 0.3649 -9.6374 0.2264 19 6 -0.9845 -9.5360 0.1302 20 7 -1.6119 -10.6851 0.1529 21 6 -0.8909 -11.7545 0.2610 22 6 -1.4360 -13.1589 0.3029 23 1 -0.6855 -13.8449 0.6954 24 6 -1.8862 -13.6032 -1.1064 25 6 -3.1565 -14.4438 -0.8472 26 6 -3.3238 -14.4073 0.6881 27 8 -2.6358 -13.2082 1.1060 28 16 0.7679 -11.3490 0.3412 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6845 -3.7146 0.8906 32 1 2.6846 -3.7145 -0.8894 33 1 0.8682 -4.9028 -2.0141 34 1 2.3902 -6.1475 1.0573 35 1 2.5088 -6.2480 -0.7159 36 1 -0.0789 -7.0795 0.0521 37 1 -1.4969 -8.5895 0.0417 38 1 -2.1215 -12.7360 -1.7234 39 1 -1.1145 -14.2099 -1.5802 40 1 -4.0197 -13.9921 -1.3359 41 1 -3.0146 -15.4673 -1.1940 42 1 -4.3796 -14.3510 0.9535 43 1 -2.8660 -15.2868 1.1408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497068455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:10 Heat of formation + Delta-G solvation = -101.397675 kcal Electronic energy + Delta-G solvation = -25896.996712 eV Core-core repulsion = 21875.298291 eV Total energy + Delta-G solvation = -4021.698421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.47753 -40.72811 -39.78232 -38.90927 -36.10774 -35.41646 -33.37713 -33.18451 -32.68290 -30.94698 -29.70368 -27.13816 -26.51478 -24.58928 -24.07606 -22.80436 -22.68386 -22.24773 -20.68167 -19.65130 -19.21785 -18.54365 -17.82298 -17.25906 -17.22049 -16.74793 -16.50844 -16.43663 -16.28684 -16.11449 -15.60418 -15.29590 -15.17619 -14.97527 -14.68882 -14.66266 -14.21988 -14.08907 -13.85428 -13.28292 -12.96624 -12.76971 -12.72580 -12.70731 -12.69237 -12.26270 -12.20548 -12.00234 -11.81677 -11.68657 -11.61733 -11.01609 -10.94588 -10.91780 -10.71066 -10.64978 -10.30763 -10.02486 -9.01073 -7.94822 -5.24315 -0.96905 -0.06603 0.47745 1.25867 1.47893 1.50867 1.57070 2.00069 2.01406 2.56318 2.74648 3.02950 3.36087 3.46029 3.52651 3.60395 3.67506 3.68009 3.91694 3.98798 4.03541 4.13079 4.20018 4.23747 4.35412 4.39873 4.60359 4.67071 4.68917 4.81904 4.87880 4.94219 4.96033 5.04372 5.15335 5.16924 5.22303 5.48191 5.76229 6.25714 6.28182 6.49627 6.78693 6.95397 7.33427 8.08884 8.31618 9.28110 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029683 B = 0.001684 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.067221 B =16621.903536 C =17237.018530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.122 3.878 11 C 0.108 3.892 12 H 0.101 0.899 13 O -0.562 6.562 14 C 0.103 3.897 15 N -0.697 5.697 16 C 0.596 3.404 17 O -0.574 6.574 18 C -0.317 4.317 19 C 0.103 3.897 20 N -0.482 5.482 21 C 0.039 3.961 22 C 0.143 3.857 23 H 0.120 0.880 24 C -0.141 4.141 25 C -0.147 4.147 26 C 0.036 3.964 27 O -0.384 6.384 28 S 0.269 5.731 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.386 0.614 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.415 0.585 37 H 0.201 0.799 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 -35.479 -1.763 35.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.095 0.905 9 N -0.383 5.383 10 C -0.005 4.005 11 C 0.048 3.952 12 H 0.119 0.881 13 O -0.369 6.369 14 C -0.022 4.022 15 N -0.348 5.348 16 C 0.382 3.618 17 O -0.456 6.456 18 C -0.442 4.442 19 C -0.056 4.056 20 N -0.196 5.196 21 C -0.235 4.235 22 C 0.082 3.918 23 H 0.137 0.863 24 C -0.181 4.181 25 C -0.185 4.185 26 C -0.040 4.040 27 O -0.303 6.303 28 S 0.529 5.471 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.235 0.765 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.253 0.747 37 H 0.218 0.782 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.810 -35.988 -1.063 36.113 hybrid contribution -0.435 2.207 -0.474 2.299 sum -3.245 -33.781 -1.537 33.972 Atomic orbital electron populations 1.69825 1.06656 1.26169 1.59146 1.25594 0.96388 1.01200 1.03538 0.85196 0.77173 0.79060 0.78215 1.20342 1.22200 1.20343 1.19620 0.91555 0.85366 1.41696 0.90518 1.42404 1.05720 1.00745 1.89408 1.21409 0.94193 0.85628 0.99269 1.22101 0.93605 0.91201 0.88323 0.88068 1.86565 1.38141 1.96199 1.15992 1.21958 0.91796 0.84559 1.03838 1.45529 1.11870 1.04338 1.73088 1.16826 0.86534 0.82327 0.76117 1.90836 1.17199 1.85190 1.52331 1.25733 0.98474 0.99112 1.20854 1.22571 0.88924 0.98016 0.96123 1.66122 1.39307 0.97838 1.16347 1.27701 0.94955 0.99497 1.01356 1.21778 0.89666 0.86902 0.93433 0.86305 1.23025 0.99480 1.00895 0.94672 1.22935 0.97503 1.01959 0.96096 1.23701 0.98670 0.87302 0.94368 1.89257 1.34897 1.45399 1.60763 1.83842 1.05094 0.95852 1.62357 0.94001 0.79144 0.94734 0.94946 0.76508 0.90025 0.90129 0.74712 0.78245 0.91612 0.87179 0.90805 0.87625 0.88253 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -36.94 5.55 -343.44 -1.91 -38.84 16 10 C 0.12 4.51 5.90 86.38 0.51 5.02 16 11 C 0.11 3.07 3.09 30.60 0.09 3.17 16 12 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 13 O -0.56 -16.36 13.03 -148.98 -1.94 -18.30 16 14 C 0.10 2.46 5.34 86.38 0.46 2.93 16 15 N -0.70 -15.34 5.43 -467.09 -2.54 -17.88 16 16 C 0.60 15.07 7.79 86.45 0.67 15.74 16 17 O -0.57 -18.29 16.97 -4.32 -0.07 -18.36 16 18 C -0.32 -6.84 6.48 23.88 0.15 -6.68 16 19 C 0.10 2.06 10.93 84.23 0.92 2.98 16 20 N -0.48 -10.56 10.47 -190.30 -1.99 -12.55 16 21 C 0.04 0.70 6.24 88.46 0.55 1.26 16 22 C 0.14 1.88 3.81 30.35 0.12 2.00 16 23 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 24 C -0.14 -1.30 6.62 31.61 0.21 -1.09 16 25 C -0.15 -0.99 7.09 31.61 0.22 -0.76 16 26 C 0.04 0.32 7.63 72.48 0.55 0.88 16 27 O -0.38 -6.73 11.30 -148.98 -1.68 -8.41 16 28 S 0.27 4.72 23.01 -56.49 -1.30 3.42 16 29 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 30 H 0.38 20.38 7.67 -92.71 -0.71 19.67 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.39 9.07 9.05 -74.05 -0.67 8.40 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.42 7.75 7.06 -92.71 -0.65 7.09 16 37 H 0.20 3.05 7.15 -2.91 -0.02 3.02 16 38 H 0.07 0.86 7.86 -2.39 -0.02 0.84 16 39 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -76.65 380.57 -4.31 -80.96 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -0.96 Total: 32.63 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.77 Total: 8.51 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -6.15 Total: -128.55 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -3.70 Total: -45.07 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.30 Total: 3.42 kcal Total: -76.65 -4.31 -80.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497068455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.437 kcal (2) G-P(sol) polarization free energy of solvation -76.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds